Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051553: flavone biosynthetic process0.00E+00
2GO:0006182: cGMP biosynthetic process0.00E+00
3GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
4GO:0010401: pectic galactan metabolic process0.00E+00
5GO:0042742: defense response to bacterium1.05E-09
6GO:0009617: response to bacterium5.25E-07
7GO:0006468: protein phosphorylation9.03E-07
8GO:0000162: tryptophan biosynthetic process3.62E-06
9GO:0060548: negative regulation of cell death6.35E-05
10GO:0009627: systemic acquired resistance8.07E-05
11GO:0009620: response to fungus8.39E-05
12GO:0009817: defense response to fungus, incompatible interaction1.07E-04
13GO:0009968: negative regulation of signal transduction3.14E-04
14GO:0010266: response to vitamin B13.14E-04
15GO:0016337: single organismal cell-cell adhesion3.14E-04
16GO:0043547: positive regulation of GTPase activity3.14E-04
17GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.14E-04
18GO:0055081: anion homeostasis3.14E-04
19GO:0002143: tRNA wobble position uridine thiolation3.14E-04
20GO:0043687: post-translational protein modification3.14E-04
21GO:0006643: membrane lipid metabolic process3.14E-04
22GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.24E-04
23GO:0050832: defense response to fungus3.73E-04
24GO:0009851: auxin biosynthetic process3.89E-04
25GO:2000031: regulation of salicylic acid mediated signaling pathway3.98E-04
26GO:0043069: negative regulation of programmed cell death6.60E-04
27GO:0015012: heparan sulfate proteoglycan biosynthetic process6.87E-04
28GO:0080183: response to photooxidative stress6.87E-04
29GO:0080185: effector dependent induction by symbiont of host immune response6.87E-04
30GO:0006024: glycosaminoglycan biosynthetic process6.87E-04
31GO:0052541: plant-type cell wall cellulose metabolic process6.87E-04
32GO:0051645: Golgi localization6.87E-04
33GO:0002215: defense response to nematode6.87E-04
34GO:0006212: uracil catabolic process6.87E-04
35GO:0043066: negative regulation of apoptotic process6.87E-04
36GO:0019483: beta-alanine biosynthetic process6.87E-04
37GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.87E-04
38GO:0060151: peroxisome localization6.87E-04
39GO:0009682: induced systemic resistance7.62E-04
40GO:0052544: defense response by callose deposition in cell wall7.62E-04
41GO:0008219: cell death9.50E-04
42GO:0006499: N-terminal protein myristoylation1.07E-03
43GO:0015783: GDP-fucose transport1.11E-03
44GO:0006517: protein deglycosylation1.11E-03
45GO:0010498: proteasomal protein catabolic process1.11E-03
46GO:0051646: mitochondrion localization1.11E-03
47GO:0009062: fatty acid catabolic process1.11E-03
48GO:1900140: regulation of seedling development1.11E-03
49GO:0090436: leaf pavement cell development1.11E-03
50GO:0070588: calcium ion transmembrane transport1.24E-03
51GO:0042343: indole glucosinolate metabolic process1.24E-03
52GO:0080147: root hair cell development1.52E-03
53GO:0006515: misfolded or incompletely synthesized protein catabolic process1.60E-03
54GO:0000187: activation of MAPK activity1.60E-03
55GO:0002239: response to oomycetes1.60E-03
56GO:0006516: glycoprotein catabolic process1.60E-03
57GO:0009751: response to salicylic acid1.91E-03
58GO:0007166: cell surface receptor signaling pathway1.98E-03
59GO:0071456: cellular response to hypoxia2.02E-03
60GO:0010188: response to microbial phytotoxin2.14E-03
61GO:0006085: acetyl-CoA biosynthetic process2.14E-03
62GO:0010600: regulation of auxin biosynthetic process2.14E-03
63GO:2000038: regulation of stomatal complex development2.14E-03
64GO:0006564: L-serine biosynthetic process2.74E-03
65GO:0007029: endoplasmic reticulum organization2.74E-03
66GO:0006665: sphingolipid metabolic process2.74E-03
67GO:0030308: negative regulation of cell growth2.74E-03
68GO:0030041: actin filament polymerization2.74E-03
69GO:0018279: protein N-linked glycosylation via asparagine2.74E-03
70GO:0048544: recognition of pollen3.24E-03
71GO:0007165: signal transduction3.28E-03
72GO:0009759: indole glucosinolate biosynthetic process3.38E-03
73GO:0006777: Mo-molybdopterin cofactor biosynthetic process3.38E-03
74GO:0047484: regulation of response to osmotic stress3.38E-03
75GO:0002229: defense response to oomycetes3.72E-03
76GO:2000037: regulation of stomatal complex patterning4.06E-03
77GO:0000911: cytokinesis by cell plate formation4.06E-03
78GO:0009612: response to mechanical stimulus4.06E-03
79GO:0009423: chorismate biosynthetic process4.06E-03
80GO:0030163: protein catabolic process4.23E-03
81GO:0006904: vesicle docking involved in exocytosis4.79E-03
82GO:0010044: response to aluminum ion4.80E-03
83GO:0080027: response to herbivore4.80E-03
84GO:0046470: phosphatidylcholine metabolic process4.80E-03
85GO:0071446: cellular response to salicylic acid stimulus4.80E-03
86GO:0009615: response to virus5.37E-03
87GO:0006102: isocitrate metabolic process5.57E-03
88GO:0030162: regulation of proteolysis5.57E-03
89GO:0009816: defense response to bacterium, incompatible interaction5.68E-03
90GO:0006952: defense response5.83E-03
91GO:0043562: cellular response to nitrogen levels6.39E-03
92GO:0009808: lignin metabolic process6.39E-03
93GO:0009699: phenylpropanoid biosynthetic process6.39E-03
94GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.39E-03
95GO:0015780: nucleotide-sugar transport7.24E-03
96GO:0007338: single fertilization7.24E-03
97GO:0009821: alkaloid biosynthetic process7.24E-03
98GO:0009813: flavonoid biosynthetic process7.37E-03
99GO:0010311: lateral root formation7.37E-03
100GO:0008202: steroid metabolic process8.14E-03
101GO:0048268: clathrin coat assembly8.14E-03
102GO:0006508: proteolysis8.18E-03
103GO:0009688: abscisic acid biosynthetic process9.07E-03
104GO:0006032: chitin catabolic process9.07E-03
105GO:0006099: tricarboxylic acid cycle9.31E-03
106GO:0030148: sphingolipid biosynthetic process1.00E-02
107GO:0019684: photosynthesis, light reaction1.00E-02
108GO:0009073: aromatic amino acid family biosynthetic process1.00E-02
109GO:0006887: exocytosis1.06E-02
110GO:0071365: cellular response to auxin stimulus1.11E-02
111GO:0000266: mitochondrial fission1.11E-02
112GO:0006790: sulfur compound metabolic process1.11E-02
113GO:0002213: defense response to insect1.11E-02
114GO:0051707: response to other organism1.15E-02
115GO:0006807: nitrogen compound metabolic process1.21E-02
116GO:2000028: regulation of photoperiodism, flowering1.21E-02
117GO:0010229: inflorescence development1.21E-02
118GO:0055046: microgametogenesis1.21E-02
119GO:0030048: actin filament-based movement1.21E-02
120GO:0016310: phosphorylation1.29E-02
121GO:0055114: oxidation-reduction process1.30E-02
122GO:0048467: gynoecium development1.32E-02
123GO:0002237: response to molecule of bacterial origin1.32E-02
124GO:0031347: regulation of defense response1.40E-02
125GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.40E-02
126GO:0046854: phosphatidylinositol phosphorylation1.43E-02
127GO:0009969: xyloglucan biosynthetic process1.43E-02
128GO:0009846: pollen germination1.45E-02
129GO:0009809: lignin biosynthetic process1.55E-02
130GO:0009735: response to cytokinin1.64E-02
131GO:0009863: salicylic acid mediated signaling pathway1.66E-02
132GO:0009723: response to ethylene1.70E-02
133GO:0006874: cellular calcium ion homeostasis1.78E-02
134GO:0016998: cell wall macromolecule catabolic process1.91E-02
135GO:0098542: defense response to other organism1.91E-02
136GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.93E-02
137GO:0009611: response to wounding1.94E-02
138GO:0009626: plant-type hypersensitive response1.96E-02
139GO:0031348: negative regulation of defense response2.03E-02
140GO:0009814: defense response, incompatible interaction2.03E-02
141GO:2000022: regulation of jasmonic acid mediated signaling pathway2.03E-02
142GO:0030433: ubiquitin-dependent ERAD pathway2.03E-02
143GO:0044550: secondary metabolite biosynthetic process2.06E-02
144GO:0010227: floral organ abscission2.16E-02
145GO:0006012: galactose metabolic process2.16E-02
146GO:0009306: protein secretion2.29E-02
147GO:0010584: pollen exine formation2.29E-02
148GO:0045492: xylan biosynthetic process2.29E-02
149GO:0042127: regulation of cell proliferation2.29E-02
150GO:0009561: megagametogenesis2.29E-02
151GO:0009742: brassinosteroid mediated signaling pathway2.35E-02
152GO:0010087: phloem or xylem histogenesis2.57E-02
153GO:0010197: polar nucleus fusion2.71E-02
154GO:0010182: sugar mediated signaling pathway2.71E-02
155GO:0046323: glucose import2.71E-02
156GO:0008360: regulation of cell shape2.71E-02
157GO:0006885: regulation of pH2.71E-02
158GO:0061025: membrane fusion2.85E-02
159GO:0006623: protein targeting to vacuole3.00E-02
160GO:0010183: pollen tube guidance3.00E-02
161GO:0009749: response to glucose3.00E-02
162GO:0010193: response to ozone3.15E-02
163GO:0006635: fatty acid beta-oxidation3.15E-02
164GO:0000302: response to reactive oxygen species3.15E-02
165GO:0009630: gravitropism3.30E-02
166GO:0016032: viral process3.30E-02
167GO:0010090: trichome morphogenesis3.45E-02
168GO:0009567: double fertilization forming a zygote and endosperm3.61E-02
169GO:0019760: glucosinolate metabolic process3.61E-02
170GO:0005975: carbohydrate metabolic process3.67E-02
171GO:0010150: leaf senescence3.83E-02
172GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.25E-02
173GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.28E-02
174GO:0016049: cell growth4.76E-02
RankGO TermAdjusted P value
1GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
2GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
3GO:0015576: sorbitol transmembrane transporter activity0.00E+00
4GO:0033759: flavone synthase activity0.00E+00
5GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
6GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
7GO:0003837: beta-ureidopropionase activity0.00E+00
8GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
9GO:0015591: D-ribose transmembrane transporter activity0.00E+00
10GO:0015575: mannitol transmembrane transporter activity0.00E+00
11GO:0015148: D-xylose transmembrane transporter activity0.00E+00
12GO:0016301: kinase activity2.47E-09
13GO:0004672: protein kinase activity2.87E-05
14GO:0005524: ATP binding2.92E-05
15GO:0004834: tryptophan synthase activity6.35E-05
16GO:0004576: oligosaccharyl transferase activity6.35E-05
17GO:0004190: aspartic-type endopeptidase activity8.78E-05
18GO:0033612: receptor serine/threonine kinase binding1.61E-04
19GO:0004656: procollagen-proline 4-dioxygenase activity1.97E-04
20GO:0004674: protein serine/threonine kinase activity2.43E-04
21GO:0015168: glycerol transmembrane transporter activity3.14E-04
22GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.14E-04
23GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity3.14E-04
24GO:0008809: carnitine racemase activity3.14E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity3.14E-04
26GO:1901149: salicylic acid binding3.14E-04
27GO:0033984: indole-3-glycerol-phosphate lyase activity3.14E-04
28GO:0004714: transmembrane receptor protein tyrosine kinase activity3.24E-04
29GO:0005506: iron ion binding5.46E-04
30GO:0004103: choline kinase activity6.87E-04
31GO:0004566: beta-glucuronidase activity6.87E-04
32GO:0032934: sterol binding6.87E-04
33GO:0045140: inositol phosphoceramide synthase activity6.87E-04
34GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity6.87E-04
35GO:0030742: GTP-dependent protein binding6.87E-04
36GO:0005388: calcium-transporting ATPase activity9.84E-04
37GO:0004383: guanylate cyclase activity1.11E-03
38GO:0005457: GDP-fucose transmembrane transporter activity1.11E-03
39GO:0004049: anthranilate synthase activity1.11E-03
40GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.11E-03
41GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.11E-03
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.11E-03
43GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.28E-03
44GO:0031418: L-ascorbic acid binding1.52E-03
45GO:0005509: calcium ion binding1.56E-03
46GO:0004165: dodecenoyl-CoA delta-isomerase activity1.60E-03
47GO:0003878: ATP citrate synthase activity1.60E-03
48GO:0005354: galactose transmembrane transporter activity1.60E-03
49GO:0004792: thiosulfate sulfurtransferase activity1.60E-03
50GO:0004449: isocitrate dehydrogenase (NAD+) activity1.60E-03
51GO:0004930: G-protein coupled receptor activity2.14E-03
52GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.14E-03
53GO:0009044: xylan 1,4-beta-xylosidase activity2.14E-03
54GO:0004031: aldehyde oxidase activity2.14E-03
55GO:0050302: indole-3-acetaldehyde oxidase activity2.14E-03
56GO:0005496: steroid binding2.74E-03
57GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.74E-03
58GO:0045431: flavonol synthase activity2.74E-03
59GO:0015145: monosaccharide transmembrane transporter activity2.74E-03
60GO:0008641: small protein activating enzyme activity2.74E-03
61GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.74E-03
62GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.74E-03
63GO:0017137: Rab GTPase binding2.74E-03
64GO:0004866: endopeptidase inhibitor activity3.38E-03
65GO:0004029: aldehyde dehydrogenase (NAD) activity3.38E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.06E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.06E-03
68GO:0004012: phospholipid-translocating ATPase activity4.06E-03
69GO:0004708: MAP kinase kinase activity5.57E-03
70GO:0004034: aldose 1-epimerase activity5.57E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity5.57E-03
72GO:0004033: aldo-keto reductase (NADP) activity5.57E-03
73GO:0030247: polysaccharide binding6.33E-03
74GO:0008142: oxysterol binding6.39E-03
75GO:0003843: 1,3-beta-D-glucan synthase activity6.39E-03
76GO:0004630: phospholipase D activity6.39E-03
77GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.39E-03
78GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.46E-03
79GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.40E-03
80GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.12E-03
81GO:0016844: strictosidine synthase activity8.14E-03
82GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.14E-03
83GO:0004568: chitinase activity9.07E-03
84GO:0008171: O-methyltransferase activity9.07E-03
85GO:0005545: 1-phosphatidylinositol binding9.07E-03
86GO:0004713: protein tyrosine kinase activity9.07E-03
87GO:0019825: oxygen binding9.94E-03
88GO:0045551: cinnamyl-alcohol dehydrogenase activity1.11E-02
89GO:0015095: magnesium ion transmembrane transporter activity1.21E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.21E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.25E-02
92GO:0003774: motor activity1.32E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.32E-02
94GO:0005217: intracellular ligand-gated ion channel activity1.43E-02
95GO:0008061: chitin binding1.43E-02
96GO:0004970: ionotropic glutamate receptor activity1.43E-02
97GO:0020037: heme binding1.44E-02
98GO:0003954: NADH dehydrogenase activity1.66E-02
99GO:0031625: ubiquitin protein ligase binding1.72E-02
100GO:0035251: UDP-glucosyltransferase activity1.91E-02
101GO:0004540: ribonuclease activity1.91E-02
102GO:0004707: MAP kinase activity1.91E-02
103GO:0003779: actin binding2.15E-02
104GO:0015035: protein disulfide oxidoreductase activity2.28E-02
105GO:0016746: transferase activity, transferring acyl groups2.28E-02
106GO:0005451: monovalent cation:proton antiporter activity2.57E-02
107GO:0030276: clathrin binding2.71E-02
108GO:0008536: Ran GTPase binding2.71E-02
109GO:0001085: RNA polymerase II transcription factor binding2.71E-02
110GO:0016853: isomerase activity2.85E-02
111GO:0015299: solute:proton antiporter activity2.85E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.85E-02
113GO:0005355: glucose transmembrane transporter activity2.85E-02
114GO:0010181: FMN binding2.85E-02
115GO:0030246: carbohydrate binding2.91E-02
116GO:0009055: electron carrier activity3.30E-02
117GO:0005516: calmodulin binding3.43E-02
118GO:0015385: sodium:proton antiporter activity3.45E-02
119GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.77E-02
120GO:0046872: metal ion binding4.20E-02
121GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.76E-02
122GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.93E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane7.29E-11
2GO:0005886: plasma membrane1.69E-09
3GO:0005911: cell-cell junction3.14E-04
4GO:0045252: oxoglutarate dehydrogenase complex3.14E-04
5GO:0005950: anthranilate synthase complex6.87E-04
6GO:0031304: intrinsic component of mitochondrial inner membrane6.87E-04
7GO:0005765: lysosomal membrane7.62E-04
8GO:0005783: endoplasmic reticulum8.19E-04
9GO:0070062: extracellular exosome1.60E-03
10GO:0009346: citrate lyase complex1.60E-03
11GO:0030660: Golgi-associated vesicle membrane2.14E-03
12GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.14E-03
13GO:0008250: oligosaccharyltransferase complex2.74E-03
14GO:0010008: endosome membrane3.31E-03
15GO:0009504: cell plate3.47E-03
16GO:0000145: exocyst3.97E-03
17GO:0005774: vacuolar membrane4.23E-03
18GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.57E-03
19GO:0000148: 1,3-beta-D-glucan synthase complex6.39E-03
20GO:0005829: cytosol7.52E-03
21GO:0030665: clathrin-coated vesicle membrane8.14E-03
22GO:0016459: myosin complex9.07E-03
23GO:0017119: Golgi transport complex9.07E-03
24GO:0090406: pollen tube1.15E-02
25GO:0005578: proteinaceous extracellular matrix1.21E-02
26GO:0005802: trans-Golgi network1.22E-02
27GO:0005768: endosome1.52E-02
28GO:0005769: early endosome1.54E-02
29GO:0043234: protein complex1.54E-02
30GO:0005794: Golgi apparatus1.65E-02
31GO:0005905: clathrin-coated pit1.91E-02
32GO:0030136: clathrin-coated vesicle2.43E-02
33GO:0000139: Golgi membrane3.04E-02
34GO:0005789: endoplasmic reticulum membrane3.71E-02
35GO:0005887: integral component of plasma membrane4.40E-02
36GO:0005667: transcription factor complex4.42E-02
37GO:0019005: SCF ubiquitin ligase complex4.93E-02
38GO:0005643: nuclear pore4.93E-02
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Gene type



Gene DE type