Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015936: coenzyme A metabolic process7.39E-05
2GO:0043255: regulation of carbohydrate biosynthetic process1.77E-04
3GO:0010541: acropetal auxin transport1.77E-04
4GO:0018026: peptidyl-lysine monomethylation1.77E-04
5GO:0001736: establishment of planar polarity1.77E-04
6GO:0031648: protein destabilization1.77E-04
7GO:2000022: regulation of jasmonic acid mediated signaling pathway2.87E-04
8GO:0010160: formation of animal organ boundary2.99E-04
9GO:0034220: ion transmembrane transport4.00E-04
10GO:0009958: positive gravitropism4.31E-04
11GO:0051513: regulation of monopolar cell growth4.32E-04
12GO:0010239: chloroplast mRNA processing4.32E-04
13GO:0080170: hydrogen peroxide transmembrane transport4.32E-04
14GO:0043481: anthocyanin accumulation in tissues in response to UV light4.32E-04
15GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.32E-04
16GO:0030104: water homeostasis5.75E-04
17GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway5.75E-04
18GO:0006183: GTP biosynthetic process5.75E-04
19GO:0009416: response to light stimulus8.73E-04
20GO:0015995: chlorophyll biosynthetic process8.83E-04
21GO:0060918: auxin transport8.91E-04
22GO:0042793: transcription from plastid promoter8.91E-04
23GO:0010337: regulation of salicylic acid metabolic process8.91E-04
24GO:1901259: chloroplast rRNA processing1.06E-03
25GO:1900057: positive regulation of leaf senescence1.24E-03
26GO:0006353: DNA-templated transcription, termination1.43E-03
27GO:0009926: auxin polar transport1.56E-03
28GO:0051865: protein autoubiquitination1.83E-03
29GO:0010206: photosystem II repair1.83E-03
30GO:0016042: lipid catabolic process2.25E-03
31GO:0006535: cysteine biosynthetic process from serine2.28E-03
32GO:0006032: chitin catabolic process2.28E-03
33GO:0048829: root cap development2.28E-03
34GO:1903507: negative regulation of nucleic acid-templated transcription2.51E-03
35GO:0048765: root hair cell differentiation2.51E-03
36GO:0008361: regulation of cell size2.75E-03
37GO:0016024: CDP-diacylglycerol biosynthetic process2.75E-03
38GO:0009624: response to nematode2.95E-03
39GO:0009718: anthocyanin-containing compound biosynthetic process3.00E-03
40GO:0010540: basipetal auxin transport3.25E-03
41GO:0010143: cutin biosynthetic process3.25E-03
42GO:0010030: positive regulation of seed germination3.51E-03
43GO:0010053: root epidermal cell differentiation3.51E-03
44GO:0009825: multidimensional cell growth3.51E-03
45GO:0010167: response to nitrate3.51E-03
46GO:0009734: auxin-activated signaling pathway3.59E-03
47GO:0006833: water transport3.78E-03
48GO:0019344: cysteine biosynthetic process4.06E-03
49GO:0009735: response to cytokinin4.30E-03
50GO:0008299: isoprenoid biosynthetic process4.34E-03
51GO:0003333: amino acid transmembrane transport4.63E-03
52GO:0016998: cell wall macromolecule catabolic process4.63E-03
53GO:0048511: rhythmic process4.63E-03
54GO:0005975: carbohydrate metabolic process4.75E-03
55GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.23E-03
56GO:0048443: stamen development5.54E-03
57GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.86E-03
58GO:0042631: cellular response to water deprivation6.18E-03
59GO:0042335: cuticle development6.18E-03
60GO:0042752: regulation of circadian rhythm6.84E-03
61GO:0071554: cell wall organization or biogenesis7.53E-03
62GO:0009658: chloroplast organization7.82E-03
63GO:0030163: protein catabolic process8.25E-03
64GO:0009639: response to red or far red light8.61E-03
65GO:0009828: plant-type cell wall loosening8.61E-03
66GO:0009567: double fertilization forming a zygote and endosperm8.61E-03
67GO:0051607: defense response to virus9.36E-03
68GO:0010027: thylakoid membrane organization9.74E-03
69GO:0016126: sterol biosynthetic process9.74E-03
70GO:0046777: protein autophosphorylation1.04E-02
71GO:0009627: systemic acquired resistance1.05E-02
72GO:0030244: cellulose biosynthetic process1.17E-02
73GO:0071555: cell wall organization1.18E-02
74GO:0010311: lateral root formation1.22E-02
75GO:0010218: response to far red light1.26E-02
76GO:0048527: lateral root development1.30E-02
77GO:0006865: amino acid transport1.34E-02
78GO:0009733: response to auxin1.37E-02
79GO:0016051: carbohydrate biosynthetic process1.39E-02
80GO:0009637: response to blue light1.39E-02
81GO:0030001: metal ion transport1.52E-02
82GO:0008152: metabolic process1.58E-02
83GO:0009640: photomorphogenesis1.66E-02
84GO:0031347: regulation of defense response1.90E-02
85GO:0009664: plant-type cell wall organization1.95E-02
86GO:0009809: lignin biosynthetic process2.05E-02
87GO:0055085: transmembrane transport3.24E-02
88GO:0045490: pectin catabolic process3.89E-02
89GO:0009451: RNA modification3.96E-02
90GO:0007166: cell surface receptor signaling pathway4.28E-02
91GO:0010468: regulation of gene expression4.41E-02
92GO:0006508: proteolysis4.79E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0052689: carboxylic ester hydrolase activity2.02E-05
4GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity7.39E-05
5GO:0042282: hydroxymethylglutaryl-CoA reductase activity7.39E-05
6GO:0004565: beta-galactosidase activity1.31E-04
7GO:0003938: IMP dehydrogenase activity1.77E-04
8GO:0005528: FK506 binding2.13E-04
9GO:0019843: rRNA binding4.25E-04
10GO:0001872: (1->3)-beta-D-glucan binding4.32E-04
11GO:0016851: magnesium chelatase activity4.32E-04
12GO:0004252: serine-type endopeptidase activity4.86E-04
13GO:0016279: protein-lysine N-methyltransferase activity5.75E-04
14GO:0010011: auxin binding5.75E-04
15GO:0010328: auxin influx transmembrane transporter activity5.75E-04
16GO:0052793: pectin acetylesterase activity5.75E-04
17GO:0015250: water channel activity7.56E-04
18GO:0030247: polysaccharide binding8.83E-04
19GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity8.91E-04
20GO:0004366: glycerol-3-phosphate O-acyltransferase activity8.91E-04
21GO:0008236: serine-type peptidase activity9.27E-04
22GO:0004124: cysteine synthase activity1.06E-03
23GO:0016788: hydrolase activity, acting on ester bonds1.12E-03
24GO:0043621: protein self-association1.68E-03
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.81E-03
26GO:0004568: chitinase activity2.28E-03
27GO:0015020: glucuronosyltransferase activity2.28E-03
28GO:0008081: phosphoric diester hydrolase activity3.00E-03
29GO:0009982: pseudouridine synthase activity3.00E-03
30GO:0010329: auxin efflux transmembrane transporter activity3.00E-03
31GO:0016829: lyase activity3.98E-03
32GO:0003714: transcription corepressor activity4.06E-03
33GO:0004707: MAP kinase activity4.63E-03
34GO:0030570: pectate lyase activity5.23E-03
35GO:0010181: FMN binding6.84E-03
36GO:0005515: protein binding6.97E-03
37GO:0016791: phosphatase activity8.61E-03
38GO:0016413: O-acetyltransferase activity9.36E-03
39GO:0008375: acetylglucosaminyltransferase activity1.05E-02
40GO:0004871: signal transducer activity1.22E-02
41GO:0003746: translation elongation factor activity1.39E-02
42GO:0003993: acid phosphatase activity1.43E-02
43GO:0050661: NADP binding1.52E-02
44GO:0015293: symporter activity1.80E-02
45GO:0015171: amino acid transmembrane transporter activity2.21E-02
46GO:0004650: polygalacturonase activity2.47E-02
47GO:0016746: transferase activity, transferring acyl groups2.69E-02
48GO:0030170: pyridoxal phosphate binding3.33E-02
49GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.37E-02
50GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.70E-02
51GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.62E-02
52GO:0042802: identical protein binding4.62E-02
RankGO TermAdjusted P value
1GO:0005576: extracellular region4.13E-05
2GO:0043674: columella7.39E-05
3GO:0009570: chloroplast stroma8.37E-05
4GO:0000427: plastid-encoded plastid RNA polymerase complex1.77E-04
5GO:0010007: magnesium chelatase complex2.99E-04
6GO:0009509: chromoplast2.99E-04
7GO:0009543: chloroplast thylakoid lumen4.25E-04
8GO:0009941: chloroplast envelope6.15E-04
9GO:0009505: plant-type cell wall7.77E-04
10GO:0046658: anchored component of plasma membrane9.04E-04
11GO:0005886: plasma membrane1.05E-03
12GO:0042807: central vacuole1.24E-03
13GO:0009986: cell surface1.24E-03
14GO:0009533: chloroplast stromal thylakoid1.24E-03
15GO:0048046: apoplast1.34E-03
16GO:0031977: thylakoid lumen1.44E-03
17GO:0005618: cell wall1.59E-03
18GO:0031225: anchored component of membrane1.70E-03
19GO:0008180: COP9 signalosome1.83E-03
20GO:0009508: plastid chromosome3.00E-03
21GO:0016020: membrane3.95E-03
22GO:0009579: thylakoid6.04E-03
23GO:0009534: chloroplast thylakoid6.12E-03
24GO:0009295: nucleoid8.98E-03
25GO:0009507: chloroplast9.78E-03
26GO:0005794: Golgi apparatus1.12E-02
27GO:0019005: SCF ubiquitin ligase complex1.17E-02
28GO:0005887: integral component of plasma membrane1.95E-02
29GO:0000502: proteasome complex2.05E-02
30GO:0005773: vacuole3.11E-02
31GO:0009535: chloroplast thylakoid membrane3.25E-02
32GO:0009705: plant-type vacuole membrane3.89E-02
33GO:0005768: endosome4.63E-02
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Gene type



Gene DE type