co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006481: C-terminal protein methylation	3.64E-05
2	GO:0015865: purine nucleotide transport	9.09E-05
3	GO:0019441: tryptophan catabolic process to kynurenine	9.09E-05
4	GO:0080183: response to photooxidative stress	9.09E-05
5	GO:0006501: C-terminal protein lipidation	9.09E-05
6	GO:0046902: regulation of mitochondrial membrane permeability	2.33E-04
7	GO:0044804: nucleophagy	3.14E-04
8	GO:0045227: capsule polysaccharide biosynthetic process	3.14E-04
9	GO:0046345: abscisic acid catabolic process	3.14E-04
10	GO:0033358: UDP-L-arabinose biosynthetic process	3.14E-04
11	GO:0000422: mitophagy	4.01E-04
12	GO:0005513: detection of calcium ion	4.01E-04
13	GO:0000045: autophagosome assembly	4.92E-04
14	GO:0006014: D-ribose metabolic process	4.92E-04
15	GO:0048280: vesicle fusion with Golgi apparatus	5.88E-04
16	GO:0050829: defense response to Gram-negative bacterium	6.87E-04
17	GO:0032259: methylation	6.97E-04
18	GO:0016559: peroxisome fission	7.90E-04
19	GO:0009809: lignin biosynthetic process	8.60E-04
20	GO:0009808: lignin metabolic process	8.97E-04
21	GO:0008202: steroid metabolic process	1.12E-03
22	GO:0007064: mitotic sister chromatid cohesion	1.24E-03
23	GO:0043069: negative regulation of programmed cell death	1.24E-03
24	GO:0006896: Golgi to vacuole transport	1.24E-03
25	GO:0000266: mitochondrial fission	1.49E-03
26	GO:0006626: protein targeting to mitochondrion	1.62E-03
27	GO:0009225: nucleotide-sugar metabolic process	1.89E-03
28	GO:0071456: cellular response to hypoxia	2.64E-03
29	GO:0006012: galactose metabolic process	2.80E-03
30	GO:0019722: calcium-mediated signaling	2.96E-03
31	GO:0042147: retrograde transport, endosome to Golgi	3.13E-03
32	GO:0042391: regulation of membrane potential	3.30E-03
33	GO:0019252: starch biosynthetic process	3.82E-03
34	GO:0009651: response to salt stress	3.82E-03
35	GO:0006623: protein targeting to vacuole	3.82E-03
36	GO:0006891: intra-Golgi vesicle-mediated transport	4.00E-03
37	GO:0009630: gravitropism	4.19E-03
38	GO:0006914: autophagy	4.56E-03
39	GO:0009607: response to biotic stimulus	5.35E-03
40	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.35E-03
41	GO:0006950: response to stress	5.76E-03
42	GO:0006888: ER to Golgi vesicle-mediated transport	5.76E-03
43	GO:0008219: cell death	6.18E-03
44	GO:0009817: defense response to fungus, incompatible interaction	6.18E-03
45	GO:0009407: toxin catabolic process	6.61E-03
46	GO:0006839: mitochondrial transport	7.97E-03
47	GO:0006631: fatty acid metabolic process	8.21E-03
48	GO:0009636: response to toxic substance	9.42E-03
49	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.93E-03
50	GO:0016310: phosphorylation	1.13E-02
51	GO:0048367: shoot system development	1.23E-02
52	GO:0009620: response to fungus	1.29E-02
53	GO:0042545: cell wall modification	1.34E-02
54	GO:0009742: brassinosteroid mediated signaling pathway	1.43E-02
55	GO:0006633: fatty acid biosynthetic process	1.89E-02
56	GO:0045490: pectin catabolic process	2.02E-02
57	GO:0007166: cell surface receptor signaling pathway	2.23E-02
58	GO:0009617: response to bacterium	2.29E-02
59	GO:0010468: regulation of gene expression	2.29E-02
60	GO:0015031: protein transport	2.61E-02
61	GO:0009826: unidimensional cell growth	2.69E-02
62	GO:0006970: response to osmotic stress	2.91E-02
63	GO:0080167: response to karrikin	3.22E-02
64	GO:0046777: protein autophosphorylation	3.38E-02
65	GO:0045454: cell redox homeostasis	3.66E-02
66	GO:0006869: lipid transport	3.91E-02
67	GO:0009737: response to abscisic acid	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0008171: O-methyltransferase activity	2.82E-05
2	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	3.64E-05
3	GO:0004061: arylformamidase activity	9.09E-05
4	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.58E-04
5	GO:0016595: glutamate binding	1.58E-04
6	GO:0019776: Atg8 ligase activity	3.14E-04
7	GO:0050373: UDP-arabinose 4-epimerase activity	3.14E-04
8	GO:0005496: steroid binding	4.01E-04
9	GO:0005471: ATP:ADP antiporter activity	4.01E-04
10	GO:0010294: abscisic acid glucosyltransferase activity	4.01E-04
11	GO:0004040: amidase activity	4.01E-04
12	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.64E-04
13	GO:0102391: decanoate--CoA ligase activity	5.88E-04
14	GO:0004747: ribokinase activity	5.88E-04
15	GO:0003978: UDP-glucose 4-epimerase activity	5.88E-04
16	GO:0004467: long-chain fatty acid-CoA ligase activity	6.87E-04
17	GO:0008865: fructokinase activity	7.90E-04
18	GO:0009055: electron carrier activity	8.03E-04
19	GO:0008142: oxysterol binding	8.97E-04
20	GO:0030552: cAMP binding	1.89E-03
21	GO:0030553: cGMP binding	1.89E-03
22	GO:0005216: ion channel activity	2.33E-03
23	GO:0005249: voltage-gated potassium channel activity	3.30E-03
24	GO:0030551: cyclic nucleotide binding	3.30E-03
25	GO:0050660: flavin adenine dinucleotide binding	3.61E-03
26	GO:0004872: receptor activity	3.82E-03
27	GO:0016301: kinase activity	4.19E-03
28	GO:0005524: ATP binding	5.94E-03
29	GO:0030145: manganese ion binding	6.83E-03
30	GO:0000149: SNARE binding	7.74E-03
31	GO:0004364: glutathione transferase activity	8.44E-03
32	GO:0005484: SNAP receptor activity	8.68E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	9.17E-03
34	GO:0045330: aspartyl esterase activity	1.15E-02
35	GO:0045735: nutrient reservoir activity	1.20E-02
36	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.29E-02
37	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.29E-02
38	GO:0030599: pectinesterase activity	1.32E-02
39	GO:0015035: protein disulfide oxidoreductase activity	1.40E-02
40	GO:0005516: calmodulin binding	1.52E-02
41	GO:0016757: transferase activity, transferring glycosyl groups	1.71E-02
42	GO:0046910: pectinesterase inhibitor activity	1.92E-02
43	GO:0008194: UDP-glycosyltransferase activity	2.19E-02
44	GO:0003824: catalytic activity	2.25E-02
45	GO:0008168: methyltransferase activity	2.69E-02
46	GO:0004674: protein serine/threonine kinase activity	2.73E-02
47	GO:0003682: chromatin binding	2.87E-02
48	GO:0042803: protein homodimerization activity	3.78E-02

Rank	GO Term	Adjusted P value
1	GO:0034274: Atg12-Atg5-Atg16 complex	9.09E-05
2	GO:0000325: plant-type vacuole	4.64E-04
3	GO:0030140: trans-Golgi network transport vesicle	4.92E-04
4	GO:0012507: ER to Golgi transport vesicle membrane	7.90E-04
5	GO:0034045: pre-autophagosomal structure membrane	8.97E-04
6	GO:0005741: mitochondrial outer membrane	2.48E-03
7	GO:0016021: integral component of membrane	3.09E-03
8	GO:0005770: late endosome	3.47E-03
9	GO:0071944: cell periphery	4.37E-03
10	GO:0032580: Golgi cisterna membrane	4.56E-03
11	GO:0005778: peroxisomal membrane	4.75E-03
12	GO:0005886: plasma membrane	5.29E-03
13	GO:0031902: late endosome membrane	8.21E-03
14	GO:0031201: SNARE complex	8.21E-03
15	GO:0000502: proteasome complex	1.07E-02
16	GO:0005618: cell wall	2.08E-02
17	GO:0005789: endoplasmic reticulum membrane	3.14E-02
18	GO:0005743: mitochondrial inner membrane	4.03E-02
19	GO:0005783: endoplasmic reticulum	4.20E-02
20	GO:0043231: intracellular membrane-bounded organelle	4.55E-02
21	GO:0005829: cytosol	4.57E-02
22	GO:0005794: Golgi apparatus	4.66E-02