GO Enrichment Analysis of Co-expressed Genes with
AT4G30620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 2.38E-09 |
| 5 | GO:0032544: plastid translation | 8.23E-08 |
| 6 | GO:0015979: photosynthesis | 8.86E-08 |
| 7 | GO:0006412: translation | 1.10E-07 |
| 8 | GO:0009658: chloroplast organization | 2.78E-05 |
| 9 | GO:0043489: RNA stabilization | 3.90E-05 |
| 10 | GO:0010207: photosystem II assembly | 5.95E-05 |
| 11 | GO:0006568: tryptophan metabolic process | 9.72E-05 |
| 12 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.68E-04 |
| 13 | GO:0009735: response to cytokinin | 2.03E-04 |
| 14 | GO:2001141: regulation of RNA biosynthetic process | 2.48E-04 |
| 15 | GO:0006241: CTP biosynthetic process | 2.48E-04 |
| 16 | GO:0006165: nucleoside diphosphate phosphorylation | 2.48E-04 |
| 17 | GO:0006228: UTP biosynthetic process | 2.48E-04 |
| 18 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 2.48E-04 |
| 19 | GO:0006183: GTP biosynthetic process | 3.33E-04 |
| 20 | GO:0042254: ribosome biogenesis | 3.95E-04 |
| 21 | GO:0045038: protein import into chloroplast thylakoid membrane | 4.25E-04 |
| 22 | GO:0042549: photosystem II stabilization | 5.22E-04 |
| 23 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 7.28E-04 |
| 24 | GO:0048564: photosystem I assembly | 8.37E-04 |
| 25 | GO:0045292: mRNA cis splicing, via spliceosome | 8.37E-04 |
| 26 | GO:0071482: cellular response to light stimulus | 9.50E-04 |
| 27 | GO:0009657: plastid organization | 9.50E-04 |
| 28 | GO:0010206: photosystem II repair | 1.07E-03 |
| 29 | GO:0000373: Group II intron splicing | 1.07E-03 |
| 30 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.19E-03 |
| 31 | GO:0006535: cysteine biosynthetic process from serine | 1.31E-03 |
| 32 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.31E-03 |
| 33 | GO:0009073: aromatic amino acid family biosynthetic process | 1.44E-03 |
| 34 | GO:0006352: DNA-templated transcription, initiation | 1.44E-03 |
| 35 | GO:0009790: embryo development | 1.89E-03 |
| 36 | GO:0009451: RNA modification | 2.28E-03 |
| 37 | GO:0019344: cysteine biosynthetic process | 2.32E-03 |
| 38 | GO:0009411: response to UV | 2.97E-03 |
| 39 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.97E-03 |
| 40 | GO:0080022: primary root development | 3.50E-03 |
| 41 | GO:0000413: protein peptidyl-prolyl isomerization | 3.50E-03 |
| 42 | GO:0042335: cuticle development | 3.50E-03 |
| 43 | GO:0030163: protein catabolic process | 4.65E-03 |
| 44 | GO:0009828: plant-type cell wall loosening | 4.85E-03 |
| 45 | GO:0009567: double fertilization forming a zygote and endosperm | 4.85E-03 |
| 46 | GO:0010027: thylakoid membrane organization | 5.47E-03 |
| 47 | GO:0009817: defense response to fungus, incompatible interaction | 6.58E-03 |
| 48 | GO:0009631: cold acclimation | 7.27E-03 |
| 49 | GO:0045087: innate immune response | 7.75E-03 |
| 50 | GO:0009637: response to blue light | 7.75E-03 |
| 51 | GO:0030001: metal ion transport | 8.48E-03 |
| 52 | GO:0042542: response to hydrogen peroxide | 8.99E-03 |
| 53 | GO:0010114: response to red light | 9.25E-03 |
| 54 | GO:0006855: drug transmembrane transport | 1.03E-02 |
| 55 | GO:0009664: plant-type cell wall organization | 1.09E-02 |
| 56 | GO:0009585: red, far-red light phototransduction | 1.14E-02 |
| 57 | GO:0006396: RNA processing | 1.49E-02 |
| 58 | GO:0042742: defense response to bacterium | 2.25E-02 |
| 59 | GO:0009826: unidimensional cell growth | 2.86E-02 |
| 60 | GO:0009409: response to cold | 3.04E-02 |
| 61 | GO:0009860: pollen tube growth | 3.10E-02 |
| 62 | GO:0032259: methylation | 4.39E-02 |
| 63 | GO:0006397: mRNA processing | 4.66E-02 |
| 64 | GO:0008152: metabolic process | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0019843: rRNA binding | 3.94E-11 |
| 4 | GO:0003735: structural constituent of ribosome | 2.26E-08 |
| 5 | GO:0016851: magnesium chelatase activity | 9.28E-07 |
| 6 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 3.90E-05 |
| 7 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 3.90E-05 |
| 8 | GO:0008266: poly(U) RNA binding | 5.95E-05 |
| 9 | GO:0016630: protochlorophyllide reductase activity | 9.72E-05 |
| 10 | GO:0004751: ribose-5-phosphate isomerase activity | 1.68E-04 |
| 11 | GO:0004550: nucleoside diphosphate kinase activity | 2.48E-04 |
| 12 | GO:0043023: ribosomal large subunit binding | 2.48E-04 |
| 13 | GO:0001053: plastid sigma factor activity | 3.33E-04 |
| 14 | GO:0016987: sigma factor activity | 3.33E-04 |
| 15 | GO:0003959: NADPH dehydrogenase activity | 4.25E-04 |
| 16 | GO:0004124: cysteine synthase activity | 6.22E-04 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.17E-04 |
| 18 | GO:0008312: 7S RNA binding | 8.37E-04 |
| 19 | GO:0003729: mRNA binding | 1.28E-03 |
| 20 | GO:0030170: pyridoxal phosphate binding | 1.80E-03 |
| 21 | GO:0005528: FK506 binding | 2.32E-03 |
| 22 | GO:0005525: GTP binding | 3.13E-03 |
| 23 | GO:0003723: RNA binding | 4.28E-03 |
| 24 | GO:0008483: transaminase activity | 5.05E-03 |
| 25 | GO:0016168: chlorophyll binding | 5.69E-03 |
| 26 | GO:0008236: serine-type peptidase activity | 6.35E-03 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.14E-02 |
| 28 | GO:0004252: serine-type endopeptidase activity | 1.85E-02 |
| 29 | GO:0005509: calcium ion binding | 2.07E-02 |
| 30 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.56E-02 |
| 31 | GO:0008168: methyltransferase activity | 2.86E-02 |
| 32 | GO:0000287: magnesium ion binding | 2.90E-02 |
| 33 | GO:0003924: GTPase activity | 4.53E-02 |
| 34 | GO:0016787: hydrolase activity | 4.79E-02 |
| 35 | GO:0004519: endonuclease activity | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.01E-32 |
| 2 | GO:0009570: chloroplast stroma | 1.67E-31 |
| 3 | GO:0009579: thylakoid | 8.78E-21 |
| 4 | GO:0009941: chloroplast envelope | 1.65E-18 |
| 5 | GO:0009534: chloroplast thylakoid | 1.65E-15 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.18E-15 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 3.94E-11 |
| 8 | GO:0005840: ribosome | 1.35E-09 |
| 9 | GO:0031977: thylakoid lumen | 1.01E-08 |
| 10 | GO:0010007: magnesium chelatase complex | 3.83E-07 |
| 11 | GO:0009547: plastid ribosome | 3.90E-05 |
| 12 | GO:0080085: signal recognition particle, chloroplast targeting | 9.72E-05 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 9.72E-05 |
| 14 | GO:0009509: chromoplast | 1.68E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 2.16E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 7.28E-04 |
| 17 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 9.50E-04 |
| 18 | GO:0000311: plastid large ribosomal subunit | 1.58E-03 |
| 19 | GO:0000312: plastid small ribosomal subunit | 1.86E-03 |
| 20 | GO:0015935: small ribosomal subunit | 2.64E-03 |
| 21 | GO:0009522: photosystem I | 3.87E-03 |
| 22 | GO:0031969: chloroplast membrane | 4.23E-03 |
| 23 | GO:0009536: plastid | 5.27E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 5.47E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 1.46E-02 |
| 26 | GO:0010287: plastoglobule | 1.65E-02 |
| 27 | GO:0005802: trans-Golgi network | 1.78E-02 |
| 28 | GO:0005768: endosome | 2.02E-02 |
| 29 | GO:0022627: cytosolic small ribosomal subunit | 2.63E-02 |
| 30 | GO:0016020: membrane | 4.53E-02 |
| 31 | GO:0043231: intracellular membrane-bounded organelle | 4.85E-02 |