co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0034337: RNA folding	0.00E+00
4	GO:2000505: regulation of energy homeostasis	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0061635: regulation of protein complex stability	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0015979: photosynthesis	6.78E-13
12	GO:0009773: photosynthetic electron transport in photosystem I	1.34E-10
13	GO:0010207: photosystem II assembly	4.40E-08
14	GO:0010205: photoinhibition	4.73E-07
15	GO:0032544: plastid translation	1.43E-05
16	GO:0090391: granum assembly	1.74E-05
17	GO:0010206: photosystem II repair	1.98E-05
18	GO:0080170: hydrogen peroxide transmembrane transport	3.86E-05
19	GO:0015994: chlorophyll metabolic process	6.89E-05
20	GO:0010027: thylakoid membrane organization	7.44E-05
21	GO:0045038: protein import into chloroplast thylakoid membrane	1.08E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	1.15E-04
23	GO:0009306: protein secretion	2.57E-04
24	GO:0010196: nonphotochemical quenching	2.76E-04
25	GO:0034220: ion transmembrane transport	3.18E-04
26	GO:0043266: regulation of potassium ion transport	3.29E-04
27	GO:0000481: maturation of 5S rRNA	3.29E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	3.29E-04
29	GO:0065002: intracellular protein transmembrane transport	3.29E-04
30	GO:0043686: co-translational protein modification	3.29E-04
31	GO:2000021: regulation of ion homeostasis	3.29E-04
32	GO:1902458: positive regulation of stomatal opening	3.29E-04
33	GO:0010028: xanthophyll cycle	3.29E-04
34	GO:0071588: hydrogen peroxide mediated signaling pathway	3.29E-04
35	GO:0015936: coenzyme A metabolic process	3.29E-04
36	GO:0043953: protein transport by the Tat complex	3.29E-04
37	GO:0043489: RNA stabilization	3.29E-04
38	GO:1904966: positive regulation of vitamin E biosynthetic process	3.29E-04
39	GO:0009642: response to light intensity	3.48E-04
40	GO:0009735: response to cytokinin	3.73E-04
41	GO:0018026: peptidyl-lysine monomethylation	7.18E-04
42	GO:0016122: xanthophyll metabolic process	7.18E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	7.18E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.18E-04
45	GO:0006568: tryptophan metabolic process	7.18E-04
46	GO:0010024: phytochromobilin biosynthetic process	7.18E-04
47	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.18E-04
48	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.18E-04
49	GO:0035304: regulation of protein dephosphorylation	7.18E-04
50	GO:0080005: photosystem stoichiometry adjustment	7.18E-04
51	GO:1900871: chloroplast mRNA modification	7.18E-04
52	GO:0009658: chloroplast organization	7.68E-04
53	GO:0015995: chlorophyll biosynthetic process	9.11E-04
54	GO:0006412: translation	9.92E-04
55	GO:1902448: positive regulation of shade avoidance	1.16E-03
56	GO:0006788: heme oxidation	1.16E-03
57	GO:0006954: inflammatory response	1.16E-03
58	GO:0006518: peptide metabolic process	1.16E-03
59	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.16E-03
60	GO:0009631: cold acclimation	1.24E-03
61	GO:0034599: cellular response to oxidative stress	1.47E-03
62	GO:0006833: water transport	1.47E-03
63	GO:2001141: regulation of RNA biosynthetic process	1.67E-03
64	GO:0051513: regulation of monopolar cell growth	1.67E-03
65	GO:0071484: cellular response to light intensity	1.67E-03
66	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.67E-03
67	GO:1901332: negative regulation of lateral root development	1.67E-03
68	GO:0008299: isoprenoid biosynthetic process	1.80E-03
69	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.24E-03
70	GO:0009765: photosynthesis, light harvesting	2.24E-03
71	GO:0006109: regulation of carbohydrate metabolic process	2.24E-03
72	GO:0045727: positive regulation of translation	2.24E-03
73	GO:0030104: water homeostasis	2.24E-03
74	GO:0071369: cellular response to ethylene stimulus	2.36E-03
75	GO:0008152: metabolic process	2.63E-03
76	GO:0055085: transmembrane transport	2.72E-03
77	GO:0031365: N-terminal protein amino acid modification	2.87E-03
78	GO:0042335: cuticle development	3.00E-03
79	GO:0042549: photosystem II stabilization	3.54E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.54E-03
81	GO:0000470: maturation of LSU-rRNA	3.54E-03
82	GO:0016554: cytidine to uridine editing	3.54E-03
83	GO:0000302: response to reactive oxygen species	3.98E-03
84	GO:0009409: response to cold	4.20E-03
85	GO:0010019: chloroplast-nucleus signaling pathway	4.26E-03
86	GO:1901259: chloroplast rRNA processing	4.26E-03
87	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.26E-03
88	GO:0017148: negative regulation of translation	4.26E-03
89	GO:0009567: double fertilization forming a zygote and endosperm	4.83E-03
90	GO:0006810: transport	5.01E-03
91	GO:0015693: magnesium ion transport	5.03E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	5.03E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.03E-03
94	GO:1900057: positive regulation of leaf senescence	5.03E-03
95	GO:0010444: guard mother cell differentiation	5.03E-03
96	GO:0032508: DNA duplex unwinding	5.85E-03
97	GO:2000070: regulation of response to water deprivation	5.85E-03
98	GO:0010492: maintenance of shoot apical meristem identity	5.85E-03
99	GO:0008610: lipid biosynthetic process	5.85E-03
100	GO:0006605: protein targeting	5.85E-03
101	GO:0071482: cellular response to light stimulus	6.71E-03
102	GO:0042744: hydrogen peroxide catabolic process	6.91E-03
103	GO:0018298: protein-chromophore linkage	7.52E-03
104	GO:0048589: developmental growth	7.60E-03
105	GO:0009051: pentose-phosphate shunt, oxidative branch	7.60E-03
106	GO:0009245: lipid A biosynthetic process	7.60E-03
107	GO:0048507: meristem development	7.60E-03
108	GO:0006633: fatty acid biosynthetic process	7.84E-03
109	GO:1900865: chloroplast RNA modification	8.55E-03
110	GO:0055062: phosphate ion homeostasis	9.53E-03
111	GO:0006535: cysteine biosynthetic process from serine	9.53E-03
112	GO:1903507: negative regulation of nucleic acid-templated transcription	1.06E-02
113	GO:0006352: DNA-templated transcription, initiation	1.06E-02
114	GO:0018119: peptidyl-cysteine S-nitrosylation	1.06E-02
115	GO:0019684: photosynthesis, light reaction	1.06E-02
116	GO:0043085: positive regulation of catalytic activity	1.06E-02
117	GO:0016024: CDP-diacylglycerol biosynthetic process	1.16E-02
118	GO:0010152: pollen maturation	1.16E-02
119	GO:0006006: glucose metabolic process	1.27E-02
120	GO:0009718: anthocyanin-containing compound biosynthetic process	1.27E-02
121	GO:0010628: positive regulation of gene expression	1.27E-02
122	GO:0010143: cutin biosynthetic process	1.38E-02
123	GO:0071732: cellular response to nitric oxide	1.50E-02
124	GO:0009664: plant-type cell wall organization	1.55E-02
125	GO:0042254: ribosome biogenesis	1.58E-02
126	GO:0010025: wax biosynthetic process	1.62E-02
127	GO:0055114: oxidation-reduction process	1.67E-02
128	GO:0019344: cysteine biosynthetic process	1.75E-02
129	GO:0000027: ribosomal large subunit assembly	1.75E-02
130	GO:0031408: oxylipin biosynthetic process	2.00E-02
131	GO:0035428: hexose transmembrane transport	2.14E-02
132	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.14E-02
133	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.27E-02
134	GO:0048443: stamen development	2.41E-02
135	GO:0009561: megagametogenesis	2.41E-02
136	GO:0042127: regulation of cell proliferation	2.41E-02
137	GO:0045454: cell redox homeostasis	2.54E-02
138	GO:0080022: primary root development	2.70E-02
139	GO:0000413: protein peptidyl-prolyl isomerization	2.70E-02
140	GO:0006662: glycerol ether metabolic process	2.85E-02
141	GO:0046323: glucose import	2.85E-02
142	GO:0006869: lipid transport	2.85E-02
143	GO:0015986: ATP synthesis coupled proton transport	3.00E-02
144	GO:0071554: cell wall organization or biogenesis	3.31E-02
145	GO:0030163: protein catabolic process	3.63E-02
146	GO:0071281: cellular response to iron ion	3.63E-02
147	GO:0009828: plant-type cell wall loosening	3.79E-02
148	GO:0007623: circadian rhythm	4.10E-02
149	GO:0005975: carbohydrate metabolic process	4.11E-02
150	GO:0009451: RNA modification	4.19E-02
151	GO:0016126: sterol biosynthetic process	4.30E-02
152	GO:0009627: systemic acquired resistance	4.65E-02
153	GO:0010468: regulation of gene expression	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0019843: rRNA binding	4.77E-09
9	GO:0005528: FK506 binding	1.17E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-06
11	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.91E-06
12	GO:0043023: ribosomal large subunit binding	3.86E-05
13	GO:0008266: poly(U) RNA binding	8.15E-05
14	GO:0004130: cytochrome-c peroxidase activity	1.56E-04
15	GO:0016787: hydrolase activity	1.59E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.29E-04
17	GO:0050139: nicotinate-N-glucosyltransferase activity	3.29E-04
18	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	3.29E-04
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.29E-04
20	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	3.29E-04
21	GO:0010242: oxygen evolving activity	3.29E-04
22	GO:0042586: peptide deformylase activity	3.29E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.29E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.29E-04
25	GO:0047746: chlorophyllase activity	7.18E-04
26	GO:0004312: fatty acid synthase activity	7.18E-04
27	GO:0015250: water channel activity	7.44E-04
28	GO:0016168: chlorophyll binding	7.98E-04
29	GO:0031072: heat shock protein binding	1.05E-03
30	GO:0004565: beta-galactosidase activity	1.05E-03
31	GO:0004751: ribose-5-phosphate isomerase activity	1.16E-03
32	GO:0070402: NADPH binding	1.16E-03
33	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.16E-03
34	GO:0003735: structural constituent of ribosome	1.22E-03
35	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.67E-03
36	GO:0016851: magnesium chelatase activity	1.67E-03
37	GO:0003729: mRNA binding	1.74E-03
38	GO:0004392: heme oxygenase (decyclizing) activity	2.24E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	2.24E-03
40	GO:0001053: plastid sigma factor activity	2.24E-03
41	GO:0010011: auxin binding	2.24E-03
42	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.24E-03
43	GO:0004045: aminoacyl-tRNA hydrolase activity	2.24E-03
44	GO:0016987: sigma factor activity	2.24E-03
45	GO:0043495: protein anchor	2.24E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	2.36E-03
47	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.59E-03
48	GO:0016688: L-ascorbate peroxidase activity	3.54E-03
49	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.54E-03
50	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.54E-03
51	GO:0031177: phosphopantetheine binding	3.54E-03
52	GO:0042578: phosphoric ester hydrolase activity	3.54E-03
53	GO:0004124: cysteine synthase activity	4.26E-03
54	GO:0004017: adenylate kinase activity	4.26E-03
55	GO:0000035: acyl binding	4.26E-03
56	GO:0004620: phospholipase activity	5.03E-03
57	GO:0019899: enzyme binding	5.03E-03
58	GO:0005509: calcium ion binding	5.82E-03
59	GO:0008312: 7S RNA binding	5.85E-03
60	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.85E-03
61	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.71E-03
62	GO:0008236: serine-type peptidase activity	7.15E-03
63	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.60E-03
64	GO:0003723: RNA binding	7.86E-03
65	GO:0030145: manganese ion binding	8.71E-03
66	GO:0008047: enzyme activator activity	9.53E-03
67	GO:0047372: acylglycerol lipase activity	1.06E-02
68	GO:0050661: NADP binding	1.09E-02
69	GO:0005515: protein binding	1.15E-02
70	GO:0016491: oxidoreductase activity	1.16E-02
71	GO:0042802: identical protein binding	1.20E-02
72	GO:0015095: magnesium ion transmembrane transporter activity	1.27E-02
73	GO:0009982: pseudouridine synthase activity	1.27E-02
74	GO:0004022: alcohol dehydrogenase (NAD) activity	1.27E-02
75	GO:0016788: hydrolase activity, acting on ester bonds	1.58E-02
76	GO:0004857: enzyme inhibitor activity	1.75E-02
77	GO:0003714: transcription corepressor activity	1.75E-02
78	GO:0043424: protein histidine kinase binding	1.87E-02
79	GO:0004707: MAP kinase activity	2.00E-02
80	GO:0051082: unfolded protein binding	2.38E-02
81	GO:0003756: protein disulfide isomerase activity	2.41E-02
82	GO:0047134: protein-disulfide reductase activity	2.55E-02
83	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.85E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	3.00E-02
85	GO:0016853: isomerase activity	3.00E-02
86	GO:0005355: glucose transmembrane transporter activity	3.00E-02
87	GO:0010181: FMN binding	3.00E-02
88	GO:0050662: coenzyme binding	3.00E-02
89	GO:0004252: serine-type endopeptidase activity	3.30E-02
90	GO:0009055: electron carrier activity	3.59E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.63E-02
92	GO:0016791: phosphatase activity	3.79E-02
93	GO:0016413: O-acetyltransferase activity	4.13E-02
94	GO:0005525: GTP binding	4.31E-02
95	GO:0008289: lipid binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	1.19E-64
5	GO:0009535: chloroplast thylakoid membrane	1.44E-41
6	GO:0009534: chloroplast thylakoid	5.09E-38
7	GO:0009570: chloroplast stroma	3.50E-34
8	GO:0009941: chloroplast envelope	1.54E-26
9	GO:0009579: thylakoid	2.98E-26
10	GO:0009543: chloroplast thylakoid lumen	1.76E-24
11	GO:0031977: thylakoid lumen	2.09E-19
12	GO:0033281: TAT protein transport complex	3.89E-08
13	GO:0030095: chloroplast photosystem II	4.40E-08
14	GO:0009654: photosystem II oxygen evolving complex	1.56E-07
15	GO:0019898: extrinsic component of membrane	1.26E-06
16	GO:0009533: chloroplast stromal thylakoid	6.60E-06
17	GO:0005840: ribosome	2.17E-04
18	GO:0031969: chloroplast membrane	2.39E-04
19	GO:0009515: granal stacked thylakoid	3.29E-04
20	GO:0031361: integral component of thylakoid membrane	3.29E-04
21	GO:0043674: columella	3.29E-04
22	GO:0009523: photosystem II	4.25E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.12E-04
24	GO:0080085: signal recognition particle, chloroplast targeting	7.18E-04
25	GO:0030093: chloroplast photosystem I	7.18E-04
26	GO:0032040: small-subunit processome	9.28E-04
27	GO:0010287: plastoglobule	1.02E-03
28	GO:0009508: plastid chromosome	1.05E-03
29	GO:0016020: membrane	1.06E-03
30	GO:0010007: magnesium chelatase complex	1.16E-03
31	GO:0009509: chromoplast	1.16E-03
32	GO:0009531: secondary cell wall	1.67E-03
33	GO:0042651: thylakoid membrane	1.80E-03
34	GO:0009522: photosystem I	3.47E-03
35	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.54E-03
36	GO:0009706: chloroplast inner membrane	4.40E-03
37	GO:0042807: central vacuole	5.03E-03
38	GO:0009295: nucleoid	5.13E-03
39	GO:0030529: intracellular ribonucleoprotein complex	5.76E-03
40	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.71E-03
41	GO:0008180: COP9 signalosome	7.60E-03
42	GO:0042644: chloroplast nucleoid	7.60E-03
43	GO:0055028: cortical microtubule	9.53E-03
44	GO:0000312: plastid small ribosomal subunit	1.38E-02
45	GO:0016021: integral component of membrane	1.68E-02
46	GO:0015935: small ribosomal subunit	2.00E-02
47	GO:0010319: stromule	3.96E-02
48	GO:0009705: plant-type vacuole membrane	4.10E-02
49	GO:0005887: integral component of plasma membrane	4.79E-02