co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0006412: translation	9.75E-19
10	GO:0042254: ribosome biogenesis	3.18E-12
11	GO:0032544: plastid translation	1.13E-10
12	GO:0009735: response to cytokinin	2.40E-07
13	GO:0010207: photosystem II assembly	2.95E-07
14	GO:0010027: thylakoid membrane organization	3.26E-07
15	GO:0015979: photosynthesis	2.67E-06
16	GO:0015995: chlorophyll biosynthetic process	1.59E-05
17	GO:0009926: auxin polar transport	5.19E-05
18	GO:0042372: phylloquinone biosynthetic process	7.42E-05
19	GO:0009772: photosynthetic electron transport in photosystem II	9.92E-05
20	GO:0009658: chloroplast organization	1.24E-04
21	GO:0046620: regulation of organ growth	1.27E-04
22	GO:0000481: maturation of 5S rRNA	1.69E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	1.69E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	1.69E-04
25	GO:1902458: positive regulation of stomatal opening	1.69E-04
26	GO:0034337: RNA folding	1.69E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	1.69E-04
28	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.69E-04
29	GO:0043489: RNA stabilization	1.69E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	1.69E-04
31	GO:0010206: photosystem II repair	1.95E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	3.19E-04
33	GO:0001736: establishment of planar polarity	3.83E-04
34	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.83E-04
35	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.83E-04
36	GO:0010541: acropetal auxin transport	3.83E-04
37	GO:0006006: glucose metabolic process	4.18E-04
38	GO:0010160: formation of animal organ boundary	6.25E-04
39	GO:0090391: granum assembly	6.25E-04
40	GO:0006518: peptide metabolic process	6.25E-04
41	GO:0009734: auxin-activated signaling pathway	7.43E-04
42	GO:0006986: response to unfolded protein	8.93E-04
43	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.93E-04
44	GO:0071484: cellular response to light intensity	8.93E-04
45	GO:0051085: chaperone mediated protein folding requiring cofactor	8.93E-04
46	GO:0051639: actin filament network formation	8.93E-04
47	GO:0006241: CTP biosynthetic process	8.93E-04
48	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.93E-04
49	GO:0006165: nucleoside diphosphate phosphorylation	8.93E-04
50	GO:0006228: UTP biosynthetic process	8.93E-04
51	GO:0009650: UV protection	8.93E-04
52	GO:1901332: negative regulation of lateral root development	8.93E-04
53	GO:0009411: response to UV	9.28E-04
54	GO:0009306: protein secretion	1.01E-03
55	GO:0000413: protein peptidyl-prolyl isomerization	1.17E-03
56	GO:0051764: actin crosslink formation	1.18E-03
57	GO:0006183: GTP biosynthetic process	1.18E-03
58	GO:0009958: positive gravitropism	1.26E-03
59	GO:0010236: plastoquinone biosynthetic process	1.50E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	1.50E-03
61	GO:0042549: photosystem II stabilization	1.85E-03
62	GO:0060918: auxin transport	1.85E-03
63	GO:0009854: oxidative photosynthetic carbon pathway	2.22E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	2.22E-03
65	GO:0017148: negative regulation of translation	2.22E-03
66	GO:0045490: pectin catabolic process	2.60E-03
67	GO:0009610: response to symbiotic fungus	2.61E-03
68	GO:0010196: nonphotochemical quenching	2.61E-03
69	GO:2000070: regulation of response to water deprivation	3.02E-03
70	GO:0048564: photosystem I assembly	3.02E-03
71	GO:0042255: ribosome assembly	3.02E-03
72	GO:0006353: DNA-templated transcription, termination	3.02E-03
73	GO:0006605: protein targeting	3.02E-03
74	GO:0032508: DNA duplex unwinding	3.02E-03
75	GO:0010311: lateral root formation	3.03E-03
76	GO:0009631: cold acclimation	3.33E-03
77	GO:0015996: chlorophyll catabolic process	3.46E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.46E-03
79	GO:0034599: cellular response to oxidative stress	3.81E-03
80	GO:0009051: pentose-phosphate shunt, oxidative branch	3.91E-03
81	GO:0009733: response to auxin	4.67E-03
82	GO:0048829: root cap development	4.87E-03
83	GO:0018119: peptidyl-cysteine S-nitrosylation	5.38E-03
84	GO:0048765: root hair cell differentiation	5.38E-03
85	GO:0043085: positive regulation of catalytic activity	5.38E-03
86	GO:0008361: regulation of cell size	5.91E-03
87	GO:0016024: CDP-diacylglycerol biosynthetic process	5.91E-03
88	GO:0045037: protein import into chloroplast stroma	5.91E-03
89	GO:0009409: response to cold	6.48E-03
90	GO:0010540: basipetal auxin transport	7.02E-03
91	GO:0010143: cutin biosynthetic process	7.02E-03
92	GO:0019253: reductive pentose-phosphate cycle	7.02E-03
93	GO:0010025: wax biosynthetic process	8.20E-03
94	GO:0000027: ribosomal large subunit assembly	8.81E-03
95	GO:0051017: actin filament bundle assembly	8.81E-03
96	GO:0061077: chaperone-mediated protein folding	1.01E-02
97	GO:0003333: amino acid transmembrane transport	1.01E-02
98	GO:0048443: stamen development	1.21E-02
99	GO:0009790: embryo development	1.32E-02
100	GO:0008033: tRNA processing	1.36E-02
101	GO:0042335: cuticle development	1.36E-02
102	GO:0042742: defense response to bacterium	1.40E-02
103	GO:0010182: sugar mediated signaling pathway	1.43E-02
104	GO:0006662: glycerol ether metabolic process	1.43E-02
105	GO:0015986: ATP synthesis coupled proton transport	1.51E-02
106	GO:0009451: RNA modification	1.60E-02
107	GO:0009793: embryo development ending in seed dormancy	1.64E-02
108	GO:0002229: defense response to oomycetes	1.66E-02
109	GO:0000302: response to reactive oxygen species	1.66E-02
110	GO:0032502: developmental process	1.74E-02
111	GO:0030163: protein catabolic process	1.82E-02
112	GO:0009639: response to red or far red light	1.90E-02
113	GO:0016311: dephosphorylation	2.51E-02
114	GO:0009817: defense response to fungus, incompatible interaction	2.61E-02
115	GO:0018298: protein-chromophore linkage	2.61E-02
116	GO:0006457: protein folding	2.78E-02
117	GO:0010218: response to far red light	2.79E-02
118	GO:0007568: aging	2.89E-02
119	GO:0048527: lateral root development	2.89E-02
120	GO:0006865: amino acid transport	2.99E-02
121	GO:0009637: response to blue light	3.08E-02
122	GO:0009853: photorespiration	3.08E-02
123	GO:0045087: innate immune response	3.08E-02
124	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.10E-02
125	GO:0006839: mitochondrial transport	3.38E-02
126	GO:0030001: metal ion transport	3.38E-02
127	GO:0042542: response to hydrogen peroxide	3.59E-02
128	GO:0045454: cell redox homeostasis	3.59E-02
129	GO:0009640: photomorphogenesis	3.69E-02
130	GO:0006869: lipid transport	3.93E-02
131	GO:0009585: red, far-red light phototransduction	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0019843: rRNA binding	5.02E-21
7	GO:0003735: structural constituent of ribosome	8.41E-20
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.88E-09
9	GO:0005528: FK506 binding	8.44E-09
10	GO:0016851: magnesium chelatase activity	3.24E-08
11	GO:0043023: ribosomal large subunit binding	1.19E-05
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.69E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.83E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.83E-04
15	GO:0008266: poly(U) RNA binding	4.71E-04
16	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.25E-04
17	GO:0008097: 5S rRNA binding	8.93E-04
18	GO:0004550: nucleoside diphosphate kinase activity	8.93E-04
19	GO:0030570: pectate lyase activity	9.28E-04
20	GO:0004659: prenyltransferase activity	1.18E-03
21	GO:0010011: auxin binding	1.18E-03
22	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.18E-03
23	GO:0010328: auxin influx transmembrane transporter activity	1.18E-03
24	GO:0052793: pectin acetylesterase activity	1.18E-03
25	GO:0043495: protein anchor	1.18E-03
26	GO:0004040: amidase activity	1.50E-03
27	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.85E-03
28	GO:0004130: cytochrome-c peroxidase activity	1.85E-03
29	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.85E-03
30	GO:0016208: AMP binding	1.85E-03
31	GO:0016688: L-ascorbate peroxidase activity	1.85E-03
32	GO:0051920: peroxiredoxin activity	2.22E-03
33	GO:0004017: adenylate kinase activity	2.22E-03
34	GO:0019899: enzyme binding	2.61E-03
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.89E-03
36	GO:0016209: antioxidant activity	3.02E-03
37	GO:0003993: acid phosphatase activity	3.81E-03
38	GO:0050661: NADP binding	4.15E-03
39	GO:0008047: enzyme activator activity	4.87E-03
40	GO:0010329: auxin efflux transmembrane transporter activity	6.46E-03
41	GO:0003690: double-stranded DNA binding	6.54E-03
42	GO:0051087: chaperone binding	9.44E-03
43	GO:0004707: MAP kinase activity	1.01E-02
44	GO:0022891: substrate-specific transmembrane transporter activity	1.14E-02
45	GO:0003727: single-stranded RNA binding	1.21E-02
46	GO:0016829: lyase activity	1.22E-02
47	GO:0047134: protein-disulfide reductase activity	1.28E-02
48	GO:0008080: N-acetyltransferase activity	1.43E-02
49	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.43E-02
50	GO:0004791: thioredoxin-disulfide reductase activity	1.51E-02
51	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.82E-02
52	GO:0051015: actin filament binding	1.82E-02
53	GO:0016791: phosphatase activity	1.90E-02
54	GO:0003723: RNA binding	2.18E-02
55	GO:0016168: chlorophyll binding	2.24E-02
56	GO:0016788: hydrolase activity, acting on ester bonds	2.47E-02
57	GO:0008236: serine-type peptidase activity	2.51E-02
58	GO:0004222: metalloendopeptidase activity	2.79E-02
59	GO:0052689: carboxylic ester hydrolase activity	3.31E-02
60	GO:0004722: protein serine/threonine phosphatase activity	3.93E-02
61	GO:0015293: symporter activity	4.01E-02
62	GO:0051287: NAD binding	4.23E-02
63	GO:0005509: calcium ion binding	4.37E-02
64	GO:0003777: microtubule motor activity	4.91E-02
65	GO:0015171: amino acid transmembrane transporter activity	4.91E-02
66	GO:0045330: aspartyl esterase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	4.34E-46
3	GO:0009507: chloroplast	3.32E-43
4	GO:0009941: chloroplast envelope	2.95E-33
5	GO:0009579: thylakoid	5.44E-32
6	GO:0009535: chloroplast thylakoid membrane	1.87E-24
7	GO:0005840: ribosome	2.01E-21
8	GO:0009543: chloroplast thylakoid lumen	3.06E-19
9	GO:0009534: chloroplast thylakoid	3.70E-18
10	GO:0031977: thylakoid lumen	1.02E-14
11	GO:0010007: magnesium chelatase complex	6.65E-09
12	GO:0000311: plastid large ribosomal subunit	1.17E-05
13	GO:0030095: chloroplast photosystem II	1.81E-05
14	GO:0009654: photosystem II oxygen evolving complex	3.68E-05
15	GO:0019898: extrinsic component of membrane	1.14E-04
16	GO:0009547: plastid ribosome	1.69E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.69E-04
18	GO:0009515: granal stacked thylakoid	1.69E-04
19	GO:0010319: stromule	1.82E-04
20	GO:0015934: large ribosomal subunit	3.72E-04
21	GO:0030093: chloroplast photosystem I	3.83E-04
22	GO:0009528: plastid inner membrane	6.25E-04
23	GO:0042651: thylakoid membrane	7.14E-04
24	GO:0032432: actin filament bundle	8.93E-04
25	GO:0031969: chloroplast membrane	1.12E-03
26	GO:0009527: plastid outer membrane	1.18E-03
27	GO:0009536: plastid	1.50E-03
28	GO:0016020: membrane	1.61E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.85E-03
30	GO:0009295: nucleoid	1.98E-03
31	GO:0009986: cell surface	2.61E-03
32	GO:0009533: chloroplast stromal thylakoid	2.61E-03
33	GO:0005884: actin filament	5.38E-03
34	GO:0032040: small-subunit processome	5.91E-03
35	GO:0009508: plastid chromosome	6.46E-03
36	GO:0015935: small ribosomal subunit	1.01E-02
37	GO:0009532: plastid stroma	1.01E-02
38	GO:0010287: plastoglobule	1.07E-02
39	GO:0009523: photosystem II	1.58E-02
40	GO:0022626: cytosolic ribosome	1.91E-02
41	GO:0005778: peroxisomal membrane	1.99E-02
42	GO:0030529: intracellular ribonucleoprotein complex	2.16E-02
43	GO:0009707: chloroplast outer membrane	2.61E-02
44	GO:0022625: cytosolic large ribosomal subunit	3.16E-02
45	GO:0031225: anchored component of membrane	3.51E-02