GO Enrichment Analysis of Co-expressed Genes with
AT4G29720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015739: sialic acid transport | 0.00E+00 |
| 2 | GO:0010966: regulation of phosphate transport | 0.00E+00 |
| 3 | GO:0060416: response to growth hormone | 0.00E+00 |
| 4 | GO:0009704: de-etiolation | 8.08E-05 |
| 5 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.25E-04 |
| 6 | GO:1904964: positive regulation of phytol biosynthetic process | 1.25E-04 |
| 7 | GO:0043686: co-translational protein modification | 1.25E-04 |
| 8 | GO:1902458: positive regulation of stomatal opening | 1.25E-04 |
| 9 | GO:0005991: trehalose metabolic process | 1.25E-04 |
| 10 | GO:0051775: response to redox state | 1.25E-04 |
| 11 | GO:0071277: cellular response to calcium ion | 1.25E-04 |
| 12 | GO:0051180: vitamin transport | 1.25E-04 |
| 13 | GO:0030974: thiamine pyrophosphate transport | 1.25E-04 |
| 14 | GO:0018298: protein-chromophore linkage | 1.76E-04 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 2.10E-04 |
| 16 | GO:0080148: negative regulation of response to water deprivation | 2.90E-04 |
| 17 | GO:0016122: xanthophyll metabolic process | 2.90E-04 |
| 18 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.90E-04 |
| 19 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.90E-04 |
| 20 | GO:0009915: phloem sucrose loading | 2.90E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.90E-04 |
| 22 | GO:0015893: drug transport | 2.90E-04 |
| 23 | GO:0034755: iron ion transmembrane transport | 2.90E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 2.90E-04 |
| 25 | GO:0010207: photosystem II assembly | 3.14E-04 |
| 26 | GO:0009644: response to high light intensity | 3.80E-04 |
| 27 | GO:0031022: nuclear migration along microfilament | 4.78E-04 |
| 28 | GO:0006954: inflammatory response | 4.78E-04 |
| 29 | GO:0006107: oxaloacetate metabolic process | 6.85E-04 |
| 30 | GO:0015979: photosynthesis | 7.35E-04 |
| 31 | GO:0010182: sugar mediated signaling pathway | 8.52E-04 |
| 32 | GO:0006734: NADH metabolic process | 9.08E-04 |
| 33 | GO:0009765: photosynthesis, light harvesting | 9.08E-04 |
| 34 | GO:0015994: chlorophyll metabolic process | 9.08E-04 |
| 35 | GO:0008295: spermidine biosynthetic process | 9.08E-04 |
| 36 | GO:0006749: glutathione metabolic process | 9.08E-04 |
| 37 | GO:0031122: cytoplasmic microtubule organization | 9.08E-04 |
| 38 | GO:0006564: L-serine biosynthetic process | 1.15E-03 |
| 39 | GO:0009904: chloroplast accumulation movement | 1.15E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.15E-03 |
| 41 | GO:0031365: N-terminal protein amino acid modification | 1.15E-03 |
| 42 | GO:0016120: carotene biosynthetic process | 1.15E-03 |
| 43 | GO:0080110: sporopollenin biosynthetic process | 1.15E-03 |
| 44 | GO:0010405: arabinogalactan protein metabolic process | 1.41E-03 |
| 45 | GO:0042549: photosystem II stabilization | 1.41E-03 |
| 46 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.41E-03 |
| 47 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.41E-03 |
| 48 | GO:0009903: chloroplast avoidance movement | 1.68E-03 |
| 49 | GO:0010189: vitamin E biosynthetic process | 1.68E-03 |
| 50 | GO:0071333: cellular response to glucose stimulus | 1.68E-03 |
| 51 | GO:0009645: response to low light intensity stimulus | 1.98E-03 |
| 52 | GO:0009395: phospholipid catabolic process | 1.98E-03 |
| 53 | GO:2000070: regulation of response to water deprivation | 2.29E-03 |
| 54 | GO:0016559: peroxisome fission | 2.29E-03 |
| 55 | GO:0007155: cell adhesion | 2.29E-03 |
| 56 | GO:0070413: trehalose metabolism in response to stress | 2.29E-03 |
| 57 | GO:0022900: electron transport chain | 2.61E-03 |
| 58 | GO:0015996: chlorophyll catabolic process | 2.61E-03 |
| 59 | GO:0007186: G-protein coupled receptor signaling pathway | 2.61E-03 |
| 60 | GO:0000373: Group II intron splicing | 2.95E-03 |
| 61 | GO:0015780: nucleotide-sugar transport | 2.95E-03 |
| 62 | GO:0006098: pentose-phosphate shunt | 2.95E-03 |
| 63 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 2.95E-03 |
| 64 | GO:0034765: regulation of ion transmembrane transport | 2.95E-03 |
| 65 | GO:0090333: regulation of stomatal closure | 2.95E-03 |
| 66 | GO:0006810: transport | 3.61E-03 |
| 67 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.66E-03 |
| 68 | GO:0019538: protein metabolic process | 3.68E-03 |
| 69 | GO:0006879: cellular iron ion homeostasis | 4.06E-03 |
| 70 | GO:0045037: protein import into chloroplast stroma | 4.45E-03 |
| 71 | GO:0006108: malate metabolic process | 4.86E-03 |
| 72 | GO:0006094: gluconeogenesis | 4.86E-03 |
| 73 | GO:0006096: glycolytic process | 4.95E-03 |
| 74 | GO:0009266: response to temperature stimulus | 5.28E-03 |
| 75 | GO:0010020: chloroplast fission | 5.28E-03 |
| 76 | GO:0005992: trehalose biosynthetic process | 6.61E-03 |
| 77 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.08E-03 |
| 78 | GO:0071555: cell wall organization | 7.49E-03 |
| 79 | GO:0016998: cell wall macromolecule catabolic process | 7.56E-03 |
| 80 | GO:0009294: DNA mediated transformation | 8.56E-03 |
| 81 | GO:0010584: pollen exine formation | 9.07E-03 |
| 82 | GO:0006817: phosphate ion transport | 9.07E-03 |
| 83 | GO:0070417: cellular response to cold | 9.60E-03 |
| 84 | GO:0000413: protein peptidyl-prolyl isomerization | 1.01E-02 |
| 85 | GO:0042391: regulation of membrane potential | 1.01E-02 |
| 86 | GO:0007623: circadian rhythm | 1.03E-02 |
| 87 | GO:0007018: microtubule-based movement | 1.12E-02 |
| 88 | GO:0019252: starch biosynthetic process | 1.18E-02 |
| 89 | GO:0019761: glucosinolate biosynthetic process | 1.30E-02 |
| 90 | GO:0005975: carbohydrate metabolic process | 1.41E-02 |
| 91 | GO:0071805: potassium ion transmembrane transport | 1.48E-02 |
| 92 | GO:0010027: thylakoid membrane organization | 1.61E-02 |
| 93 | GO:0042128: nitrate assimilation | 1.74E-02 |
| 94 | GO:0010411: xyloglucan metabolic process | 1.81E-02 |
| 95 | GO:0009832: plant-type cell wall biogenesis | 2.01E-02 |
| 96 | GO:0009407: toxin catabolic process | 2.08E-02 |
| 97 | GO:0048527: lateral root development | 2.15E-02 |
| 98 | GO:0006099: tricarboxylic acid cycle | 2.37E-02 |
| 99 | GO:0006839: mitochondrial transport | 2.52E-02 |
| 100 | GO:0006631: fatty acid metabolic process | 2.60E-02 |
| 101 | GO:0051707: response to other organism | 2.75E-02 |
| 102 | GO:0042546: cell wall biogenesis | 2.83E-02 |
| 103 | GO:0008643: carbohydrate transport | 2.91E-02 |
| 104 | GO:0006629: lipid metabolic process | 2.93E-02 |
| 105 | GO:0009636: response to toxic substance | 2.99E-02 |
| 106 | GO:0031347: regulation of defense response | 3.15E-02 |
| 107 | GO:0006857: oligopeptide transport | 3.57E-02 |
| 108 | GO:0009909: regulation of flower development | 3.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015136: sialic acid transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 3 | GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 5 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 7 | GO:0005080: protein kinase C binding | 1.25E-04 |
| 8 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.25E-04 |
| 9 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 1.25E-04 |
| 10 | GO:0090422: thiamine pyrophosphate transporter activity | 1.25E-04 |
| 11 | GO:0042586: peptide deformylase activity | 1.25E-04 |
| 12 | GO:0008568: microtubule-severing ATPase activity | 1.25E-04 |
| 13 | GO:0016168: chlorophyll binding | 1.30E-04 |
| 14 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.90E-04 |
| 15 | GO:0004766: spermidine synthase activity | 2.90E-04 |
| 16 | GO:0008805: carbon-monoxide oxygenase activity | 2.90E-04 |
| 17 | GO:0008967: phosphoglycolate phosphatase activity | 2.90E-04 |
| 18 | GO:0022891: substrate-specific transmembrane transporter activity | 6.28E-04 |
| 19 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.85E-04 |
| 20 | GO:0001872: (1->3)-beta-D-glucan binding | 6.85E-04 |
| 21 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 6.85E-04 |
| 22 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 9.08E-04 |
| 23 | GO:0080032: methyl jasmonate esterase activity | 9.08E-04 |
| 24 | GO:0043495: protein anchor | 9.08E-04 |
| 25 | GO:0009011: starch synthase activity | 9.08E-04 |
| 26 | GO:0016615: malate dehydrogenase activity | 1.41E-03 |
| 27 | GO:0080030: methyl indole-3-acetate esterase activity | 1.41E-03 |
| 28 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.41E-03 |
| 29 | GO:0004332: fructose-bisphosphate aldolase activity | 1.41E-03 |
| 30 | GO:0005242: inward rectifier potassium channel activity | 1.68E-03 |
| 31 | GO:0030060: L-malate dehydrogenase activity | 1.68E-03 |
| 32 | GO:0051753: mannan synthase activity | 1.68E-03 |
| 33 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 1.98E-03 |
| 34 | GO:0019899: enzyme binding | 1.98E-03 |
| 35 | GO:0042802: identical protein binding | 2.08E-03 |
| 36 | GO:0016788: hydrolase activity, acting on ester bonds | 2.74E-03 |
| 37 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.95E-03 |
| 38 | GO:0005381: iron ion transmembrane transporter activity | 3.31E-03 |
| 39 | GO:0015293: symporter activity | 3.50E-03 |
| 40 | GO:0047372: acylglycerol lipase activity | 4.06E-03 |
| 41 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.86E-03 |
| 42 | GO:0031072: heat shock protein binding | 4.86E-03 |
| 43 | GO:0004565: beta-galactosidase activity | 4.86E-03 |
| 44 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.28E-03 |
| 45 | GO:0008146: sulfotransferase activity | 5.71E-03 |
| 46 | GO:0031409: pigment binding | 6.15E-03 |
| 47 | GO:0043424: protein histidine kinase binding | 7.08E-03 |
| 48 | GO:0004176: ATP-dependent peptidase activity | 7.56E-03 |
| 49 | GO:0005215: transporter activity | 8.73E-03 |
| 50 | GO:0005249: voltage-gated potassium channel activity | 1.01E-02 |
| 51 | GO:0030551: cyclic nucleotide binding | 1.01E-02 |
| 52 | GO:0008017: microtubule binding | 1.08E-02 |
| 53 | GO:0016853: isomerase activity | 1.12E-02 |
| 54 | GO:0050662: coenzyme binding | 1.12E-02 |
| 55 | GO:0016491: oxidoreductase activity | 1.14E-02 |
| 56 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.24E-02 |
| 57 | GO:0048038: quinone binding | 1.24E-02 |
| 58 | GO:0004518: nuclease activity | 1.30E-02 |
| 59 | GO:0004672: protein kinase activity | 1.34E-02 |
| 60 | GO:0016759: cellulose synthase activity | 1.42E-02 |
| 61 | GO:0016791: phosphatase activity | 1.42E-02 |
| 62 | GO:0016597: amino acid binding | 1.54E-02 |
| 63 | GO:0016757: transferase activity, transferring glycosyl groups | 1.55E-02 |
| 64 | GO:0051213: dioxygenase activity | 1.61E-02 |
| 65 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.70E-02 |
| 66 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.81E-02 |
| 67 | GO:0030247: polysaccharide binding | 1.81E-02 |
| 68 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.30E-02 |
| 69 | GO:0003993: acid phosphatase activity | 2.37E-02 |
| 70 | GO:0042803: protein homodimerization activity | 2.49E-02 |
| 71 | GO:0004364: glutathione transferase activity | 2.68E-02 |
| 72 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.91E-02 |
| 73 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.07E-02 |
| 74 | GO:0051287: NAD binding | 3.15E-02 |
| 75 | GO:0003824: catalytic activity | 3.26E-02 |
| 76 | GO:0003777: microtubule motor activity | 3.66E-02 |
| 77 | GO:0016874: ligase activity | 4.19E-02 |
| 78 | GO:0051082: unfolded protein binding | 4.37E-02 |
| 79 | GO:0016887: ATPase activity | 4.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.66E-25 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.81E-12 |
| 3 | GO:0009579: thylakoid | 1.25E-07 |
| 4 | GO:0009534: chloroplast thylakoid | 1.31E-07 |
| 5 | GO:0009941: chloroplast envelope | 2.87E-07 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.90E-06 |
| 7 | GO:0016021: integral component of membrane | 2.64E-05 |
| 8 | GO:0010287: plastoglobule | 1.11E-04 |
| 9 | GO:0009782: photosystem I antenna complex | 1.25E-04 |
| 10 | GO:0009570: chloroplast stroma | 2.15E-04 |
| 11 | GO:0009528: plastid inner membrane | 4.78E-04 |
| 12 | GO:0009527: plastid outer membrane | 9.08E-04 |
| 13 | GO:0009523: photosystem II | 9.76E-04 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 1.03E-03 |
| 15 | GO:0009707: chloroplast outer membrane | 1.93E-03 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.98E-03 |
| 17 | GO:0046658: anchored component of plasma membrane | 2.19E-03 |
| 18 | GO:0031977: thylakoid lumen | 2.88E-03 |
| 19 | GO:0030076: light-harvesting complex | 5.71E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 5.96E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 7.08E-03 |
| 22 | GO:0042651: thylakoid membrane | 7.08E-03 |
| 23 | GO:0009532: plastid stroma | 7.56E-03 |
| 24 | GO:0005871: kinesin complex | 9.60E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 1.18E-02 |
| 26 | GO:0000139: Golgi membrane | 1.19E-02 |
| 27 | GO:0010319: stromule | 1.48E-02 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 1.61E-02 |
| 29 | GO:0048046: apoplast | 1.74E-02 |
| 30 | GO:0005856: cytoskeleton | 2.99E-02 |