Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0090042: tubulin deacetylation0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0006642: triglyceride mobilization0.00E+00
10GO:0006223: uracil salvage0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0009658: chloroplast organization1.26E-11
13GO:0015979: photosynthesis3.10E-08
14GO:0019253: reductive pentose-phosphate cycle5.39E-07
15GO:0071482: cellular response to light stimulus4.41E-06
16GO:0006352: DNA-templated transcription, initiation1.44E-05
17GO:0009773: photosynthetic electron transport in photosystem I1.44E-05
18GO:2001141: regulation of RNA biosynthetic process1.66E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.66E-05
20GO:0009767: photosynthetic electron transport chain2.28E-05
21GO:0006546: glycine catabolic process3.05E-05
22GO:0006810: transport6.82E-05
23GO:0010190: cytochrome b6f complex assembly7.23E-05
24GO:0042026: protein refolding1.00E-04
25GO:0010196: nonphotochemical quenching1.33E-04
26GO:0006096: glycolytic process1.95E-04
27GO:0043489: RNA stabilization2.04E-04
28GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.04E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process2.04E-04
30GO:1904964: positive regulation of phytol biosynthetic process2.04E-04
31GO:0009657: plastid organization2.11E-04
32GO:0032544: plastid translation2.11E-04
33GO:0009735: response to cytokinin3.49E-04
34GO:0015995: chlorophyll biosynthetic process3.81E-04
35GO:0009073: aromatic amino acid family biosynthetic process4.16E-04
36GO:0018119: peptidyl-cysteine S-nitrosylation4.16E-04
37GO:0019684: photosynthesis, light reaction4.16E-04
38GO:0080183: response to photooxidative stress4.57E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process4.57E-04
40GO:0010270: photosystem II oxygen evolving complex assembly4.57E-04
41GO:0010275: NAD(P)H dehydrogenase complex assembly4.57E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process4.57E-04
43GO:0006094: gluconeogenesis5.42E-04
44GO:0010207: photosystem II assembly6.10E-04
45GO:0010020: chloroplast fission6.10E-04
46GO:0090351: seedling development6.82E-04
47GO:0019563: glycerol catabolic process7.44E-04
48GO:0006518: peptide metabolic process7.44E-04
49GO:0006696: ergosterol biosynthetic process7.44E-04
50GO:0032504: multicellular organism reproduction7.44E-04
51GO:0006000: fructose metabolic process7.44E-04
52GO:0019344: cysteine biosynthetic process8.38E-04
53GO:0009793: embryo development ending in seed dormancy9.29E-04
54GO:0061077: chaperone-mediated protein folding1.01E-03
55GO:0006165: nucleoside diphosphate phosphorylation1.06E-03
56GO:0006228: UTP biosynthetic process1.06E-03
57GO:0006424: glutamyl-tRNA aminoacylation1.06E-03
58GO:0016556: mRNA modification1.06E-03
59GO:0043572: plastid fission1.06E-03
60GO:0051085: chaperone mediated protein folding requiring cofactor1.06E-03
61GO:0006241: CTP biosynthetic process1.06E-03
62GO:0016117: carotenoid biosynthetic process1.40E-03
63GO:0044206: UMP salvage1.41E-03
64GO:0071483: cellular response to blue light1.41E-03
65GO:0010037: response to carbon dioxide1.41E-03
66GO:0015976: carbon utilization1.41E-03
67GO:0051781: positive regulation of cell division1.41E-03
68GO:0019464: glycine decarboxylation via glycine cleavage system1.41E-03
69GO:0006183: GTP biosynthetic process1.41E-03
70GO:0045727: positive regulation of translation1.41E-03
71GO:2000122: negative regulation of stomatal complex development1.41E-03
72GO:0043097: pyrimidine nucleoside salvage1.80E-03
73GO:0032543: mitochondrial translation1.80E-03
74GO:0010236: plastoquinone biosynthetic process1.80E-03
75GO:0006461: protein complex assembly1.80E-03
76GO:1902183: regulation of shoot apical meristem development1.80E-03
77GO:0019252: starch biosynthetic process1.88E-03
78GO:0006206: pyrimidine nucleobase metabolic process2.21E-03
79GO:0032973: amino acid export2.21E-03
80GO:0006014: D-ribose metabolic process2.21E-03
81GO:0042549: photosystem II stabilization2.21E-03
82GO:0006828: manganese ion transport2.21E-03
83GO:0006458: 'de novo' protein folding2.66E-03
84GO:0009854: oxidative photosynthetic carbon pathway2.66E-03
85GO:0010019: chloroplast-nucleus signaling pathway2.66E-03
86GO:0010555: response to mannitol2.66E-03
87GO:0006457: protein folding2.80E-03
88GO:0010027: thylakoid membrane organization2.89E-03
89GO:0006400: tRNA modification3.13E-03
90GO:0043090: amino acid import3.13E-03
91GO:0048564: photosystem I assembly3.63E-03
92GO:0009642: response to light intensity3.63E-03
93GO:0018298: protein-chromophore linkage3.76E-03
94GO:0046686: response to cadmium ion4.11E-03
95GO:0017004: cytochrome complex assembly4.15E-03
96GO:0006002: fructose 6-phosphate metabolic process4.15E-03
97GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.15E-03
98GO:0010206: photosystem II repair4.70E-03
99GO:0080144: amino acid homeostasis4.70E-03
100GO:2000024: regulation of leaf development4.70E-03
101GO:0016051: carbohydrate biosynthetic process4.76E-03
102GO:0009637: response to blue light4.76E-03
103GO:0009853: photorespiration4.76E-03
104GO:1900865: chloroplast RNA modification5.27E-03
105GO:0006535: cysteine biosynthetic process from serine5.86E-03
106GO:0010114: response to red light6.13E-03
107GO:0009089: lysine biosynthetic process via diaminopimelate6.48E-03
108GO:0043085: positive regulation of catalytic activity6.48E-03
109GO:0006415: translational termination6.48E-03
110GO:0000272: polysaccharide catabolic process6.48E-03
111GO:0006816: calcium ion transport6.48E-03
112GO:0045037: protein import into chloroplast stroma7.12E-03
113GO:0006006: glucose metabolic process7.78E-03
114GO:0005986: sucrose biosynthetic process7.78E-03
115GO:0009409: response to cold1.04E-02
116GO:0009116: nucleoside metabolic process1.06E-02
117GO:0009944: polarity specification of adaxial/abaxial axis1.06E-02
118GO:0007017: microtubule-based process1.14E-02
119GO:0009768: photosynthesis, light harvesting in photosystem I1.14E-02
120GO:0016575: histone deacetylation1.14E-02
121GO:0006418: tRNA aminoacylation for protein translation1.14E-02
122GO:0006730: one-carbon metabolic process1.30E-02
123GO:0007005: mitochondrion organization1.30E-02
124GO:0009411: response to UV1.38E-02
125GO:0006508: proteolysis1.54E-02
126GO:0008152: metabolic process1.55E-02
127GO:0080022: primary root development1.64E-02
128GO:0000413: protein peptidyl-prolyl isomerization1.64E-02
129GO:0042631: cellular response to water deprivation1.64E-02
130GO:0006662: glycerol ether metabolic process1.73E-02
131GO:0008360: regulation of cell shape1.73E-02
132GO:0080156: mitochondrial mRNA modification2.01E-02
133GO:0042742: defense response to bacterium2.10E-02
134GO:0032502: developmental process2.11E-02
135GO:0010286: heat acclimation2.41E-02
136GO:0009627: systemic acquired resistance2.83E-02
137GO:0042128: nitrate assimilation2.83E-02
138GO:0008219: cell death3.16E-02
139GO:0009817: defense response to fungus, incompatible interaction3.16E-02
140GO:0048481: plant ovule development3.16E-02
141GO:0045893: positive regulation of transcription, DNA-templated3.35E-02
142GO:0010218: response to far red light3.38E-02
143GO:0009407: toxin catabolic process3.38E-02
144GO:0009631: cold acclimation3.50E-02
145GO:0010119: regulation of stomatal movement3.50E-02
146GO:0045087: innate immune response3.74E-02
147GO:0034599: cellular response to oxidative stress3.86E-02
148GO:0006631: fatty acid metabolic process4.22E-02
149GO:0042542: response to hydrogen peroxide4.35E-02
150GO:0009744: response to sucrose4.47E-02
151GO:0045454: cell redox homeostasis4.68E-02
152GO:0009636: response to toxic substance4.86E-02
153GO:0006855: drug transmembrane transport4.99E-02
RankGO TermAdjusted P value
1GO:0042903: tubulin deacetylase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
10GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
11GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
12GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
13GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
14GO:0051721: protein phosphatase 2A binding0.00E+00
15GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
16GO:0001053: plastid sigma factor activity1.55E-07
17GO:0016987: sigma factor activity1.55E-07
18GO:0019843: rRNA binding2.92E-06
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.48E-06
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.05E-05
21GO:0004222: metalloendopeptidase activity4.05E-05
22GO:0005528: FK506 binding4.76E-05
23GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.00E-04
24GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.04E-04
25GO:0051996: squalene synthase activity2.04E-04
26GO:0004807: triose-phosphate isomerase activity2.04E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.04E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity2.04E-04
29GO:0003867: 4-aminobutyrate transaminase activity2.04E-04
30GO:0008237: metallopeptidase activity2.63E-04
31GO:0051082: unfolded protein binding2.66E-04
32GO:0044183: protein binding involved in protein folding4.16E-04
33GO:0016630: protochlorophyllide reductase activity4.57E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.57E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.57E-04
36GO:0008967: phosphoglycolate phosphatase activity4.57E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.57E-04
38GO:0050017: L-3-cyanoalanine synthase activity4.57E-04
39GO:0004618: phosphoglycerate kinase activity4.57E-04
40GO:0010297: heteropolysaccharide binding4.57E-04
41GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.57E-04
42GO:0004047: aminomethyltransferase activity4.57E-04
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.57E-04
44GO:0031072: heat shock protein binding5.42E-04
45GO:0008266: poly(U) RNA binding6.10E-04
46GO:0030267: glyoxylate reductase (NADP) activity7.44E-04
47GO:0002161: aminoacyl-tRNA editing activity7.44E-04
48GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity7.44E-04
49GO:0051537: 2 iron, 2 sulfur cluster binding8.93E-04
50GO:0004176: ATP-dependent peptidase activity1.01E-03
51GO:0048487: beta-tubulin binding1.06E-03
52GO:0016149: translation release factor activity, codon specific1.06E-03
53GO:0004550: nucleoside diphosphate kinase activity1.06E-03
54GO:0004300: enoyl-CoA hydratase activity1.06E-03
55GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.06E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.06E-03
57GO:0004375: glycine dehydrogenase (decarboxylating) activity1.06E-03
58GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.17E-03
59GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.41E-03
60GO:0043495: protein anchor1.41E-03
61GO:0004845: uracil phosphoribosyltransferase activity1.41E-03
62GO:0005509: calcium ion binding1.46E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor1.80E-03
64GO:0008374: O-acyltransferase activity1.80E-03
65GO:0003959: NADPH dehydrogenase activity1.80E-03
66GO:0048038: quinone binding2.01E-03
67GO:0042578: phosphoric ester hydrolase activity2.21E-03
68GO:0004849: uridine kinase activity2.66E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.66E-03
70GO:0004747: ribokinase activity2.66E-03
71GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.66E-03
72GO:0004124: cysteine synthase activity2.66E-03
73GO:0016168: chlorophyll binding3.05E-03
74GO:0019899: enzyme binding3.13E-03
75GO:0004033: aldo-keto reductase (NADP) activity3.63E-03
76GO:0008865: fructokinase activity3.63E-03
77GO:0003843: 1,3-beta-D-glucan synthase activity4.15E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.15E-03
79GO:0003747: translation release factor activity4.70E-03
80GO:0005384: manganese ion transmembrane transporter activity5.27E-03
81GO:0008047: enzyme activator activity5.86E-03
82GO:0015386: potassium:proton antiporter activity6.48E-03
83GO:0043621: protein self-association6.63E-03
84GO:0005198: structural molecule activity6.89E-03
85GO:0000049: tRNA binding7.12E-03
86GO:0004022: alcohol dehydrogenase (NAD) activity7.78E-03
87GO:0004089: carbonate dehydratase activity7.78E-03
88GO:0015095: magnesium ion transmembrane transporter activity7.78E-03
89GO:0031409: pigment binding9.90E-03
90GO:0004407: histone deacetylase activity1.06E-02
91GO:0015079: potassium ion transmembrane transporter activity1.14E-02
92GO:0022891: substrate-specific transmembrane transporter activity1.38E-02
93GO:0003756: protein disulfide isomerase activity1.47E-02
94GO:0009055: electron carrier activity1.50E-02
95GO:0047134: protein-disulfide reductase activity1.55E-02
96GO:0004812: aminoacyl-tRNA ligase activity1.55E-02
97GO:0003723: RNA binding1.62E-02
98GO:0050662: coenzyme binding1.82E-02
99GO:0004791: thioredoxin-disulfide reductase activity1.82E-02
100GO:0003735: structural constituent of ribosome2.01E-02
101GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.21E-02
102GO:0005200: structural constituent of cytoskeleton2.41E-02
103GO:0008483: transaminase activity2.41E-02
104GO:0042802: identical protein binding2.60E-02
105GO:0009931: calcium-dependent protein serine/threonine kinase activity2.83E-02
106GO:0004683: calmodulin-dependent protein kinase activity2.94E-02
107GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.05E-02
108GO:0008236: serine-type peptidase activity3.05E-02
109GO:0015238: drug transmembrane transporter activity3.27E-02
110GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.50E-02
111GO:0016740: transferase activity3.61E-02
112GO:0003746: translation elongation factor activity3.74E-02
113GO:0000987: core promoter proximal region sequence-specific DNA binding3.86E-02
114GO:0051539: 4 iron, 4 sulfur cluster binding4.10E-02
115GO:0050661: NADP binding4.10E-02
116GO:0004364: glutathione transferase activity4.35E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast3.88E-75
4GO:0009535: chloroplast thylakoid membrane1.41E-36
5GO:0009570: chloroplast stroma7.22E-35
6GO:0009941: chloroplast envelope1.28E-33
7GO:0009579: thylakoid2.49E-21
8GO:0009543: chloroplast thylakoid lumen1.01E-16
9GO:0009534: chloroplast thylakoid3.37E-13
10GO:0031969: chloroplast membrane4.10E-11
11GO:0031977: thylakoid lumen1.04E-10
12GO:0009654: photosystem II oxygen evolving complex2.88E-10
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.38E-10
14GO:0030095: chloroplast photosystem II6.57E-09
15GO:0019898: extrinsic component of membrane1.97E-07
16GO:0042651: thylakoid membrane1.48E-06
17GO:0010319: stromule1.53E-05
18GO:0010287: plastoglobule3.77E-05
19GO:0009523: photosystem II1.68E-04
20GO:0009547: plastid ribosome2.04E-04
21GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.04E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex4.57E-04
23GO:0048046: apoplast9.35E-04
24GO:0005960: glycine cleavage complex1.06E-03
25GO:0022626: cytosolic ribosome1.64E-03
26GO:0009512: cytochrome b6f complex1.80E-03
27GO:0009706: chloroplast inner membrane1.82E-03
28GO:0005840: ribosome1.88E-03
29GO:0009536: plastid2.56E-03
30GO:0009295: nucleoid2.58E-03
31GO:0009533: chloroplast stromal thylakoid3.13E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex4.15E-03
33GO:0009539: photosystem II reaction center4.15E-03
34GO:0045298: tubulin complex4.70E-03
35GO:0000311: plastid large ribosomal subunit7.12E-03
36GO:0009508: plastid chromosome7.78E-03
37GO:0000312: plastid small ribosomal subunit8.47E-03
38GO:0030076: light-harvesting complex9.17E-03
39GO:0016020: membrane9.33E-03
40GO:0009532: plastid stroma1.22E-02
41GO:0015935: small ribosomal subunit1.22E-02
42GO:0009522: photosystem I1.82E-02
43GO:0005759: mitochondrial matrix1.86E-02
44GO:0030529: intracellular ribonucleoprotein complex2.61E-02
45GO:0009707: chloroplast outer membrane3.16E-02
46GO:0015934: large ribosomal subunit3.50E-02
47GO:0005874: microtubule3.79E-02
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Gene type



Gene DE type