Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
2GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
3GO:0072321: chaperone-mediated protein transport0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0072660: maintenance of protein location in plasma membrane0.00E+00
6GO:0006042: glucosamine biosynthetic process0.00E+00
7GO:1901137: carbohydrate derivative biosynthetic process0.00E+00
8GO:0044794: positive regulation by host of viral process0.00E+00
9GO:0042430: indole-containing compound metabolic process0.00E+00
10GO:0070212: protein poly-ADP-ribosylation0.00E+00
11GO:0045792: negative regulation of cell size0.00E+00
12GO:0006457: protein folding2.63E-14
13GO:0034976: response to endoplasmic reticulum stress1.21E-09
14GO:0046686: response to cadmium ion2.73E-08
15GO:0045454: cell redox homeostasis7.00E-07
16GO:0031349: positive regulation of defense response4.77E-06
17GO:0042742: defense response to bacterium6.67E-06
18GO:0055074: calcium ion homeostasis1.69E-05
19GO:0072661: protein targeting to plasma membrane1.69E-05
20GO:0010200: response to chitin3.84E-05
21GO:0016192: vesicle-mediated transport4.04E-05
22GO:0006952: defense response4.79E-05
23GO:0006886: intracellular protein transport6.40E-05
24GO:0006468: protein phosphorylation7.29E-05
25GO:0009617: response to bacterium7.38E-05
26GO:0009626: plant-type hypersensitive response8.67E-05
27GO:0009627: systemic acquired resistance8.78E-05
28GO:0015031: protein transport9.17E-05
29GO:0009751: response to salicylic acid1.00E-04
30GO:0006465: signal peptide processing1.05E-04
31GO:0009553: embryo sac development1.06E-04
32GO:0009863: salicylic acid mediated signaling pathway1.30E-04
33GO:0016998: cell wall macromolecule catabolic process1.72E-04
34GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.07E-04
35GO:0009651: response to salt stress2.16E-04
36GO:0009306: protein secretion2.49E-04
37GO:0009700: indole phytoalexin biosynthetic process3.24E-04
38GO:0050691: regulation of defense response to virus by host3.24E-04
39GO:0010230: alternative respiration3.24E-04
40GO:0060862: negative regulation of floral organ abscission3.24E-04
41GO:0042964: thioredoxin reduction3.24E-04
42GO:0046244: salicylic acid catabolic process3.24E-04
43GO:0019276: UDP-N-acetylgalactosamine metabolic process3.24E-04
44GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine3.24E-04
45GO:0034975: protein folding in endoplasmic reticulum3.24E-04
46GO:0006047: UDP-N-acetylglucosamine metabolic process3.24E-04
47GO:0051245: negative regulation of cellular defense response3.24E-04
48GO:0009609: response to symbiotic bacterium3.24E-04
49GO:0010150: leaf senescence3.34E-04
50GO:0006605: protein targeting3.40E-04
51GO:0030968: endoplasmic reticulum unfolded protein response4.17E-04
52GO:0000302: response to reactive oxygen species4.51E-04
53GO:0006979: response to oxidative stress6.49E-04
54GO:0006032: chitin catabolic process6.91E-04
55GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.07E-04
56GO:0051252: regulation of RNA metabolic process7.07E-04
57GO:0031204: posttranslational protein targeting to membrane, translocation7.07E-04
58GO:2000072: regulation of defense response to fungus, incompatible interaction7.07E-04
59GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.07E-04
60GO:0015865: purine nucleotide transport7.07E-04
61GO:0009615: response to virus7.22E-04
62GO:0006906: vesicle fusion8.30E-04
63GO:1900140: regulation of seedling development1.15E-03
64GO:0010359: regulation of anion channel activity1.15E-03
65GO:0010581: regulation of starch biosynthetic process1.15E-03
66GO:0045793: positive regulation of cell size1.15E-03
67GO:0006011: UDP-glucose metabolic process1.15E-03
68GO:0010272: response to silver ion1.15E-03
69GO:0045039: protein import into mitochondrial inner membrane1.15E-03
70GO:0048281: inflorescence morphogenesis1.15E-03
71GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.15E-03
72GO:1902626: assembly of large subunit precursor of preribosome1.15E-03
73GO:0002237: response to molecule of bacterial origin1.16E-03
74GO:0009409: response to cold1.31E-03
75GO:0006099: tricarboxylic acid cycle1.43E-03
76GO:0000027: ribosomal large subunit assembly1.59E-03
77GO:0009555: pollen development1.62E-03
78GO:0010148: transpiration1.65E-03
79GO:0009855: determination of bilateral symmetry1.65E-03
80GO:0032877: positive regulation of DNA endoreduplication1.65E-03
81GO:0000187: activation of MAPK activity1.65E-03
82GO:0048194: Golgi vesicle budding1.65E-03
83GO:0002239: response to oomycetes1.65E-03
84GO:0043207: response to external biotic stimulus1.65E-03
85GO:0046902: regulation of mitochondrial membrane permeability1.65E-03
86GO:0072334: UDP-galactose transmembrane transport1.65E-03
87GO:0006612: protein targeting to membrane1.65E-03
88GO:0006887: exocytosis1.68E-03
89GO:0051707: response to other organism1.87E-03
90GO:0031348: negative regulation of defense response2.11E-03
91GO:0009814: defense response, incompatible interaction2.11E-03
92GO:0009408: response to heat2.13E-03
93GO:0010188: response to microbial phytotoxin2.21E-03
94GO:0060548: negative regulation of cell death2.21E-03
95GO:0051781: positive regulation of cell division2.21E-03
96GO:0045088: regulation of innate immune response2.21E-03
97GO:0000460: maturation of 5.8S rRNA2.21E-03
98GO:0010363: regulation of plant-type hypersensitive response2.21E-03
99GO:0042273: ribosomal large subunit biogenesis2.21E-03
100GO:0006621: protein retention in ER lumen2.21E-03
101GO:0009625: response to insect2.30E-03
102GO:0031347: regulation of defense response2.38E-03
103GO:0046283: anthocyanin-containing compound metabolic process2.82E-03
104GO:0031365: N-terminal protein amino acid modification2.82E-03
105GO:0009697: salicylic acid biosynthetic process2.82E-03
106GO:0010197: polar nucleus fusion3.16E-03
107GO:0050832: defense response to fungus3.23E-03
108GO:0010942: positive regulation of cell death3.49E-03
109GO:0000470: maturation of LSU-rRNA3.49E-03
110GO:0060918: auxin transport3.49E-03
111GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.49E-03
112GO:0009620: response to fungus3.81E-03
113GO:0010193: response to ozone3.89E-03
114GO:0009610: response to symbiotic fungus4.95E-03
115GO:0071446: cellular response to salicylic acid stimulus4.95E-03
116GO:0080186: developmental vegetative growth4.95E-03
117GO:0031540: regulation of anthocyanin biosynthetic process5.76E-03
118GO:0006102: isocitrate metabolic process5.76E-03
119GO:0009787: regulation of abscisic acid-activated signaling pathway5.76E-03
120GO:0009816: defense response to bacterium, incompatible interaction5.96E-03
121GO:0010204: defense response signaling pathway, resistance gene-independent6.60E-03
122GO:0043562: cellular response to nitrogen levels6.60E-03
123GO:2000031: regulation of salicylic acid mediated signaling pathway6.60E-03
124GO:0009699: phenylpropanoid biosynthetic process6.60E-03
125GO:0019430: removal of superoxide radicals6.60E-03
126GO:0010120: camalexin biosynthetic process6.60E-03
127GO:0016049: cell growth6.99E-03
128GO:0008219: cell death7.35E-03
129GO:0010112: regulation of systemic acquired resistance7.48E-03
130GO:0006189: 'de novo' IMP biosynthetic process7.48E-03
131GO:0015780: nucleotide-sugar transport7.48E-03
132GO:0010205: photoinhibition8.41E-03
133GO:0043067: regulation of programmed cell death8.41E-03
134GO:0010119: regulation of stomatal movement8.51E-03
135GO:0009867: jasmonic acid mediated signaling pathway9.33E-03
136GO:0045087: innate immune response9.33E-03
137GO:0009870: defense response signaling pathway, resistance gene-dependent9.37E-03
138GO:0043069: negative regulation of programmed cell death9.37E-03
139GO:0010215: cellulose microfibril organization9.37E-03
140GO:0007064: mitotic sister chromatid cohesion9.37E-03
141GO:0000272: polysaccharide catabolic process1.04E-02
142GO:0072593: reactive oxygen species metabolic process1.04E-02
143GO:0009737: response to abscisic acid1.06E-02
144GO:0071365: cellular response to auxin stimulus1.14E-02
145GO:0012501: programmed cell death1.14E-02
146GO:0015706: nitrate transport1.14E-02
147GO:0042542: response to hydrogen peroxide1.16E-02
148GO:0006626: protein targeting to mitochondrion1.25E-02
149GO:0010075: regulation of meristem growth1.25E-02
150GO:0009934: regulation of meristem structural organization1.36E-02
151GO:0048467: gynoecium development1.36E-02
152GO:0034605: cellular response to heat1.36E-02
153GO:0010167: response to nitrate1.48E-02
154GO:0070588: calcium ion transmembrane transport1.48E-02
155GO:0042343: indole glucosinolate metabolic process1.48E-02
156GO:0009846: pollen germination1.52E-02
157GO:0000162: tryptophan biosynthetic process1.60E-02
158GO:0006364: rRNA processing1.63E-02
159GO:0010224: response to UV-B1.69E-02
160GO:0006487: protein N-linked glycosylation1.72E-02
161GO:0015992: proton transport1.97E-02
162GO:0098542: defense response to other organism1.97E-02
163GO:0080167: response to karrikin1.97E-02
164GO:0048278: vesicle docking1.97E-02
165GO:0048316: seed development1.99E-02
166GO:0030433: ubiquitin-dependent ERAD pathway2.10E-02
167GO:0019748: secondary metabolic process2.10E-02
168GO:0046777: protein autophosphorylation2.14E-02
169GO:0009411: response to UV2.23E-02
170GO:0018105: peptidyl-serine phosphorylation2.39E-02
171GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.51E-02
172GO:0008033: tRNA processing2.65E-02
173GO:0042391: regulation of membrane potential2.65E-02
174GO:0000413: protein peptidyl-prolyl isomerization2.65E-02
175GO:0010051: xylem and phloem pattern formation2.65E-02
176GO:0042631: cellular response to water deprivation2.65E-02
177GO:0006662: glycerol ether metabolic process2.80E-02
178GO:0048868: pollen tube development2.80E-02
179GO:0009960: endosperm development2.80E-02
180GO:0015986: ATP synthesis coupled proton transport2.95E-02
181GO:0061025: membrane fusion2.95E-02
182GO:0009646: response to absence of light2.95E-02
183GO:0006623: protein targeting to vacuole3.10E-02
184GO:0002229: defense response to oomycetes3.25E-02
185GO:0006891: intra-Golgi vesicle-mediated transport3.25E-02
186GO:0009790: embryo development3.40E-02
187GO:0016032: viral process3.41E-02
188GO:0006464: cellular protein modification process3.73E-02
189GO:0009567: double fertilization forming a zygote and endosperm3.73E-02
190GO:0000910: cytokinesis4.06E-02
191GO:0001666: response to hypoxia4.23E-02
192GO:0007166: cell surface receptor signaling pathway4.57E-02
193GO:0042128: nitrate assimilation4.57E-02
194GO:0010468: regulation of gene expression4.77E-02
195GO:0055114: oxidation-reduction process4.98E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0005046: KDEL sequence binding0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity0.00E+00
5GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
6GO:0008752: FMN reductase activity0.00E+00
7GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
8GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
9GO:0004164: diphthine synthase activity0.00E+00
10GO:0052873: FMN reductase (NADPH) activity0.00E+00
11GO:0003756: protein disulfide isomerase activity8.73E-09
12GO:0051082: unfolded protein binding6.83E-07
13GO:0005524: ATP binding8.35E-07
14GO:0004775: succinate-CoA ligase (ADP-forming) activity4.77E-06
15GO:0004776: succinate-CoA ligase (GDP-forming) activity4.77E-06
16GO:0005460: UDP-glucose transmembrane transporter activity3.75E-05
17GO:0016301: kinase activity5.65E-05
18GO:0047631: ADP-ribose diphosphatase activity1.05E-04
19GO:0005459: UDP-galactose transmembrane transporter activity1.05E-04
20GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.17E-04
21GO:0005509: calcium ion binding1.37E-04
22GO:0000210: NAD+ diphosphatase activity1.52E-04
23GO:0008565: protein transporter activity2.55E-04
24GO:0008320: protein transmembrane transporter activity2.70E-04
25GO:0004674: protein serine/threonine kinase activity2.90E-04
26GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.24E-04
27GO:0004638: phosphoribosylaminoimidazole carboxylase activity3.24E-04
28GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.24E-04
29GO:0097367: carbohydrate derivative binding3.24E-04
30GO:0080042: ADP-glucose pyrophosphohydrolase activity3.24E-04
31GO:0048037: cofactor binding3.24E-04
32GO:0004048: anthranilate phosphoribosyltransferase activity3.24E-04
33GO:0004714: transmembrane receptor protein tyrosine kinase activity3.40E-04
34GO:0004568: chitinase activity6.91E-04
35GO:0004338: glucan exo-1,3-beta-glucosidase activity7.07E-04
36GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity7.07E-04
37GO:0080041: ADP-ribose pyrophosphohydrolase activity7.07E-04
38GO:0043021: ribonucleoprotein complex binding7.07E-04
39GO:0008428: ribonuclease inhibitor activity7.07E-04
40GO:0017110: nucleoside-diphosphatase activity7.07E-04
41GO:0004683: calmodulin-dependent protein kinase activity8.87E-04
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.15E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.15E-03
44GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.15E-03
45GO:0000030: mannosyltransferase activity1.15E-03
46GO:0004190: aspartic-type endopeptidase activity1.29E-03
47GO:0008061: chitin binding1.29E-03
48GO:0003746: translation elongation factor activity1.35E-03
49GO:0000149: SNARE binding1.51E-03
50GO:0004672: protein kinase activity1.59E-03
51GO:0004449: isocitrate dehydrogenase (NAD+) activity1.65E-03
52GO:0035529: NADH pyrophosphatase activity1.65E-03
53GO:0009678: hydrogen-translocating pyrophosphatase activity1.65E-03
54GO:0005484: SNAP receptor activity1.87E-03
55GO:0043495: protein anchor2.21E-03
56GO:0010011: auxin binding2.21E-03
57GO:0046923: ER retention sequence binding2.21E-03
58GO:0005086: ARF guanyl-nucleotide exchange factor activity2.21E-03
59GO:0051287: NAD binding2.38E-03
60GO:0008948: oxaloacetate decarboxylase activity2.82E-03
61GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.82E-03
62GO:0005471: ATP:ADP antiporter activity2.82E-03
63GO:0005507: copper ion binding3.26E-03
64GO:0010181: FMN binding3.39E-03
65GO:0004791: thioredoxin-disulfide reductase activity3.39E-03
66GO:0004029: aldehyde dehydrogenase (NAD) activity3.49E-03
67GO:0004872: receptor activity3.64E-03
68GO:0004012: phospholipid-translocating ATPase activity4.20E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.44E-03
70GO:0015035: protein disulfide oxidoreductase activity4.44E-03
71GO:0008235: metalloexopeptidase activity4.95E-03
72GO:0004427: inorganic diphosphatase activity4.95E-03
73GO:0004708: MAP kinase kinase activity5.76E-03
74GO:0004564: beta-fructofuranosidase activity5.76E-03
75GO:0009931: calcium-dependent protein serine/threonine kinase activity6.29E-03
76GO:0008135: translation factor activity, RNA binding6.60E-03
77GO:0015112: nitrate transmembrane transporter activity8.41E-03
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.41E-03
79GO:0004575: sucrose alpha-glucosidase activity8.41E-03
80GO:0050897: cobalt ion binding8.51E-03
81GO:0004713: protein tyrosine kinase activity9.37E-03
82GO:0030246: carbohydrate binding9.78E-03
83GO:0004177: aminopeptidase activity1.04E-02
84GO:0008559: xenobiotic-transporting ATPase activity1.04E-02
85GO:0005516: calmodulin binding1.19E-02
86GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.25E-02
87GO:0015095: magnesium ion transmembrane transporter activity1.25E-02
88GO:0031072: heat shock protein binding1.25E-02
89GO:0005262: calcium channel activity1.25E-02
90GO:0015114: phosphate ion transmembrane transporter activity1.25E-02
91GO:0005388: calcium-transporting ATPase activity1.25E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.36E-02
93GO:0008266: poly(U) RNA binding1.36E-02
94GO:0030552: cAMP binding1.48E-02
95GO:0030553: cGMP binding1.48E-02
96GO:0005216: ion channel activity1.84E-02
97GO:0008233: peptidase activity1.92E-02
98GO:0004298: threonine-type endopeptidase activity1.97E-02
99GO:0004707: MAP kinase activity1.97E-02
100GO:0033612: receptor serine/threonine kinase binding1.97E-02
101GO:0016779: nucleotidyltransferase activity2.10E-02
102GO:0008810: cellulase activity2.23E-02
103GO:0047134: protein-disulfide reductase activity2.51E-02
104GO:0005249: voltage-gated potassium channel activity2.65E-02
105GO:0030551: cyclic nucleotide binding2.65E-02
106GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.72E-02
107GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.80E-02
108GO:0030276: clathrin binding2.80E-02
109GO:0016853: isomerase activity2.95E-02
110GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.74E-02
111GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.89E-02
112GO:0008483: transaminase activity3.89E-02
113GO:0051213: dioxygenase activity4.23E-02
114GO:0030247: polysaccharide binding4.75E-02
RankGO TermAdjusted P value
1GO:0031205: endoplasmic reticulum Sec complex0.00E+00
2GO:0042719: mitochondrial intermembrane space protein transporter complex0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005784: Sec61 translocon complex0.00E+00
5GO:0005783: endoplasmic reticulum9.56E-22
6GO:0005788: endoplasmic reticulum lumen1.24E-21
7GO:0005886: plasma membrane7.78E-14
8GO:0005774: vacuolar membrane7.21E-07
9GO:0030134: ER to Golgi transport vesicle4.77E-06
10GO:0005789: endoplasmic reticulum membrane7.93E-06
11GO:0005773: vacuole9.78E-06
12GO:0005618: cell wall1.26E-04
13GO:0009507: chloroplast1.74E-04
14GO:0005801: cis-Golgi network2.07E-04
15GO:0009506: plasmodesma3.15E-04
16GO:0005787: signal peptidase complex3.24E-04
17GO:0016021: integral component of membrane4.11E-04
18GO:0005794: Golgi apparatus4.94E-04
19GO:0031090: organelle membrane5.01E-04
20GO:0030665: clathrin-coated vesicle membrane5.92E-04
21GO:0005740: mitochondrial envelope6.91E-04
22GO:0070545: PeBoW complex7.07E-04
23GO:0048046: apoplast8.00E-04
24GO:0009505: plant-type cell wall1.09E-03
25GO:0031225: anchored component of membrane1.16E-03
26GO:0030176: integral component of endoplasmic reticulum membrane1.29E-03
27GO:0031201: SNARE complex1.68E-03
28GO:0016020: membrane1.79E-03
29GO:0030660: Golgi-associated vesicle membrane2.21E-03
30GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.21E-03
31GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)2.21E-03
32GO:0008250: oligosaccharyltransferase complex2.82E-03
33GO:0009504: cell plate3.64E-03
34GO:0016592: mediator complex4.16E-03
35GO:0030173: integral component of Golgi membrane4.20E-03
36GO:0030687: preribosome, large subunit precursor4.95E-03
37GO:0030131: clathrin adaptor complex5.76E-03
38GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.76E-03
39GO:0005623: cell5.89E-03
40GO:0000326: protein storage vacuole6.60E-03
41GO:0031901: early endosome membrane7.48E-03
42GO:0005829: cytosol9.22E-03
43GO:0017119: Golgi transport complex9.37E-03
44GO:0005765: lysosomal membrane1.04E-02
45GO:0031012: extracellular matrix1.25E-02
46GO:0005750: mitochondrial respiratory chain complex III1.36E-02
47GO:0005753: mitochondrial proton-transporting ATP synthase complex1.48E-02
48GO:0005795: Golgi stack1.48E-02
49GO:0005769: early endosome1.60E-02
50GO:0000502: proteasome complex1.63E-02
51GO:0005758: mitochondrial intermembrane space1.72E-02
52GO:0005730: nucleolus1.80E-02
53GO:0005741: mitochondrial outer membrane1.97E-02
54GO:0005839: proteasome core complex1.97E-02
55GO:0005747: mitochondrial respiratory chain complex I1.99E-02
56GO:0005834: heterotrimeric G-protein complex2.06E-02
57GO:0005743: mitochondrial inner membrane2.93E-02
58GO:0005759: mitochondrial matrix3.65E-02
59GO:0032580: Golgi cisterna membrane3.73E-02
60GO:0005802: trans-Golgi network4.02E-02
61GO:0005887: integral component of plasma membrane4.66E-02
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Gene type



Gene DE type