co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0002376: immune system process	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
7	GO:0006468: protein phosphorylation	1.01E-05
8	GO:0001676: long-chain fatty acid metabolic process	1.27E-05
9	GO:0060548: negative regulation of cell death	2.35E-05
10	GO:0042742: defense response to bacterium	5.37E-05
11	GO:0007166: cell surface receptor signaling pathway	7.28E-05
12	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	7.89E-05
13	GO:0080136: priming of cellular response to stress	1.75E-04
14	GO:0010200: response to chitin	2.28E-04
15	GO:0009407: toxin catabolic process	3.74E-04
16	GO:0015706: nitrate transport	3.86E-04
17	GO:0019752: carboxylic acid metabolic process	3.96E-04
18	GO:1902000: homogentisate catabolic process	3.96E-04
19	GO:0010541: acropetal auxin transport	3.96E-04
20	GO:0002221: pattern recognition receptor signaling pathway	3.96E-04
21	GO:0015914: phospholipid transport	3.96E-04
22	GO:0010150: leaf senescence	4.52E-04
23	GO:0007034: vacuolar transport	4.96E-04
24	GO:0010167: response to nitrate	5.54E-04
25	GO:1900140: regulation of seedling development	6.47E-04
26	GO:0010359: regulation of anion channel activity	6.47E-04
27	GO:0080055: low-affinity nitrate transport	6.47E-04
28	GO:0009410: response to xenobiotic stimulus	6.47E-04
29	GO:0009072: aromatic amino acid family metabolic process	6.47E-04
30	GO:0048281: inflorescence morphogenesis	6.47E-04
31	GO:0008333: endosome to lysosome transport	6.47E-04
32	GO:0048194: Golgi vesicle budding	9.23E-04
33	GO:0006979: response to oxidative stress	1.13E-03
34	GO:2000038: regulation of stomatal complex development	1.22E-03
35	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.22E-03
36	GO:0010188: response to microbial phytotoxin	1.22E-03
37	GO:0080142: regulation of salicylic acid biosynthetic process	1.22E-03
38	GO:0006662: glycerol ether metabolic process	1.32E-03
39	GO:0006623: protein targeting to vacuole	1.52E-03
40	GO:0006564: L-serine biosynthetic process	1.56E-03
41	GO:0031365: N-terminal protein amino acid modification	1.56E-03
42	GO:0010193: response to ozone	1.63E-03
43	GO:1902456: regulation of stomatal opening	1.91E-03
44	GO:0010405: arabinogalactan protein metabolic process	1.91E-03
45	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.91E-03
46	GO:0009228: thiamine biosynthetic process	1.91E-03
47	GO:2000037: regulation of stomatal complex patterning	2.30E-03
48	GO:0042128: nitrate assimilation	2.61E-03
49	GO:0046686: response to cadmium ion	2.67E-03
50	GO:0070370: cellular heat acclimation	2.70E-03
51	GO:0050790: regulation of catalytic activity	2.70E-03
52	GO:0043090: amino acid import	2.70E-03
53	GO:1900056: negative regulation of leaf senescence	2.70E-03
54	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.13E-03
55	GO:0009819: drought recovery	3.13E-03
56	GO:0006470: protein dephosphorylation	3.29E-03
57	GO:0009617: response to bacterium	3.47E-03
58	GO:0010119: regulation of stomatal movement	3.51E-03
59	GO:0010120: camalexin biosynthetic process	3.58E-03
60	GO:0030968: endoplasmic reticulum unfolded protein response	3.58E-03
61	GO:0006002: fructose 6-phosphate metabolic process	3.58E-03
62	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.58E-03
63	GO:0034599: cellular response to oxidative stress	4.02E-03
64	GO:0046685: response to arsenic-containing substance	4.05E-03
65	GO:0009821: alkaloid biosynthetic process	4.05E-03
66	GO:0006952: defense response	4.41E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.54E-03
68	GO:0006631: fatty acid metabolic process	4.56E-03
69	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.05E-03
70	GO:0000103: sulfate assimilation	5.05E-03
71	GO:0010072: primary shoot apical meristem specification	5.58E-03
72	GO:0072593: reactive oxygen species metabolic process	5.58E-03
73	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.13E-03
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.62E-03
75	GO:0006486: protein glycosylation	6.66E-03
76	GO:0010229: inflorescence development	6.70E-03
77	GO:0010102: lateral root morphogenesis	6.70E-03
78	GO:0046777: protein autophosphorylation	6.91E-03
79	GO:0034605: cellular response to heat	7.28E-03
80	GO:0070588: calcium ion transmembrane transport	7.89E-03
81	GO:0010053: root epidermal cell differentiation	7.89E-03
82	GO:0009969: xyloglucan biosynthetic process	7.89E-03
83	GO:0009626: plant-type hypersensitive response	8.40E-03
84	GO:2000377: regulation of reactive oxygen species metabolic process	9.15E-03
85	GO:0000027: ribosomal large subunit assembly	9.15E-03
86	GO:0009863: salicylic acid mediated signaling pathway	9.15E-03
87	GO:0030150: protein import into mitochondrial matrix	9.15E-03
88	GO:0006396: RNA processing	9.78E-03
89	GO:0031348: negative regulation of defense response	1.12E-02
90	GO:0009814: defense response, incompatible interaction	1.12E-02
91	GO:0009625: response to insect	1.19E-02
92	GO:0010227: floral organ abscission	1.19E-02
93	GO:0010091: trichome branching	1.26E-02
94	GO:0006284: base-excision repair	1.26E-02
95	GO:0009845: seed germination	1.29E-02
96	GO:0042147: retrograde transport, endosome to Golgi	1.33E-02
97	GO:0042631: cellular response to water deprivation	1.41E-02
98	GO:0042391: regulation of membrane potential	1.41E-02
99	GO:0008360: regulation of cell shape	1.49E-02
100	GO:0006520: cellular amino acid metabolic process	1.49E-02
101	GO:0010197: polar nucleus fusion	1.49E-02
102	GO:0009646: response to absence of light	1.56E-02
103	GO:0010183: pollen tube guidance	1.64E-02
104	GO:0000302: response to reactive oxygen species	1.72E-02
105	GO:0010468: regulation of gene expression	1.97E-02
106	GO:0006904: vesicle docking involved in exocytosis	2.06E-02
107	GO:0015031: protein transport	2.18E-02
108	GO:0009615: response to virus	2.24E-02
109	GO:0009409: response to cold	2.39E-02
110	GO:0055114: oxidation-reduction process	2.58E-02
111	GO:0048481: plant ovule development	2.71E-02
112	GO:0008219: cell death	2.71E-02
113	GO:0009817: defense response to fungus, incompatible interaction	2.71E-02
114	GO:0006970: response to osmotic stress	2.75E-02
115	GO:0009832: plant-type cell wall biogenesis	2.80E-02
116	GO:0006499: N-terminal protein myristoylation	2.90E-02
117	GO:0009723: response to ethylene	2.95E-02
118	GO:0048527: lateral root development	3.00E-02
119	GO:0010043: response to zinc ion	3.00E-02
120	GO:0006865: amino acid transport	3.10E-02
121	GO:0044550: secondary metabolite biosynthetic process	3.44E-02
122	GO:0006887: exocytosis	3.62E-02
123	GO:0045454: cell redox homeostasis	3.78E-02
124	GO:0006886: intracellular protein transport	3.90E-02
125	GO:0009636: response to toxic substance	4.17E-02
126	GO:0051603: proteolysis involved in cellular protein catabolic process	4.86E-02
127	GO:0010224: response to UV-B	4.86E-02
128	GO:0006857: oligopeptide transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
4	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
5	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
6	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
7	GO:0102391: decanoate--CoA ligase activity	7.89E-05
8	GO:0043295: glutathione binding	1.05E-04
9	GO:0004467: long-chain fatty acid-CoA ligase activity	1.05E-04
10	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.35E-04
11	GO:0005524: ATP binding	1.48E-04
12	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.75E-04
13	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.75E-04
14	GO:0016301: kinase activity	3.31E-04
15	GO:0001671: ATPase activator activity	3.96E-04
16	GO:0019172: glyoxalase III activity	3.96E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	3.96E-04
18	GO:0038199: ethylene receptor activity	3.96E-04
19	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.05E-04
20	GO:0004364: glutathione transferase activity	5.89E-04
21	GO:0052692: raffinose alpha-galactosidase activity	6.47E-04
22	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.47E-04
23	GO:0004557: alpha-galactosidase activity	6.47E-04
24	GO:0033612: receptor serine/threonine kinase binding	8.23E-04
25	GO:0051740: ethylene binding	9.23E-04
26	GO:0031176: endo-1,4-beta-xylanase activity	9.23E-04
27	GO:0047134: protein-disulfide reductase activity	1.14E-03
28	GO:0004674: protein serine/threonine kinase activity	1.16E-03
29	GO:0004791: thioredoxin-disulfide reductase activity	1.42E-03
30	GO:0004872: receptor activity	1.52E-03
31	GO:0008725: DNA-3-methyladenine glycosylase activity	1.56E-03
32	GO:0004722: protein serine/threonine phosphatase activity	1.83E-03
33	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.85E-03
34	GO:0031593: polyubiquitin binding	1.91E-03
35	GO:0030976: thiamine pyrophosphate binding	1.91E-03
36	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.91E-03
37	GO:0004602: glutathione peroxidase activity	2.30E-03
38	GO:0004656: procollagen-proline 4-dioxygenase activity	2.30E-03
39	GO:0004012: phospholipid-translocating ATPase activity	2.30E-03
40	GO:0004672: protein kinase activity	2.38E-03
41	GO:0008320: protein transmembrane transporter activity	2.70E-03
42	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.70E-03
43	GO:0016831: carboxy-lyase activity	2.70E-03
44	GO:0008235: metalloexopeptidase activity	2.70E-03
45	GO:0003872: 6-phosphofructokinase activity	2.70E-03
46	GO:0003843: 1,3-beta-D-glucan synthase activity	3.58E-03
47	GO:0008417: fucosyltransferase activity	4.05E-03
48	GO:0071949: FAD binding	4.05E-03
49	GO:0016844: strictosidine synthase activity	4.54E-03
50	GO:0015112: nitrate transmembrane transporter activity	4.54E-03
51	GO:0004673: protein histidine kinase activity	5.05E-03
52	GO:0004713: protein tyrosine kinase activity	5.05E-03
53	GO:0043531: ADP binding	5.43E-03
54	GO:0015293: symporter activity	5.56E-03
55	GO:0001054: RNA polymerase I activity	5.58E-03
56	GO:0004177: aminopeptidase activity	5.58E-03
57	GO:0008378: galactosyltransferase activity	6.13E-03
58	GO:0000155: phosphorelay sensor kinase activity	6.70E-03
59	GO:0005388: calcium-transporting ATPase activity	6.70E-03
60	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.70E-03
61	GO:0008131: primary amine oxidase activity	7.28E-03
62	GO:0003712: transcription cofactor activity	7.89E-03
63	GO:0004190: aspartic-type endopeptidase activity	7.89E-03
64	GO:0030552: cAMP binding	7.89E-03
65	GO:0030553: cGMP binding	7.89E-03
66	GO:0031418: L-ascorbic acid binding	9.15E-03
67	GO:0005516: calmodulin binding	9.72E-03
68	GO:0015035: protein disulfide oxidoreductase activity	9.78E-03
69	GO:0005216: ion channel activity	9.80E-03
70	GO:0051087: chaperone binding	9.80E-03
71	GO:0004707: MAP kinase activity	1.05E-02
72	GO:0005249: voltage-gated potassium channel activity	1.41E-02
73	GO:0030551: cyclic nucleotide binding	1.41E-02
74	GO:0004527: exonuclease activity	1.49E-02
75	GO:0008536: Ran GTPase binding	1.49E-02
76	GO:0048038: quinone binding	1.72E-02
77	GO:0004197: cysteine-type endopeptidase activity	1.81E-02
78	GO:0016597: amino acid binding	2.15E-02
79	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.42E-02
80	GO:0004721: phosphoprotein phosphatase activity	2.52E-02
81	GO:0004683: calmodulin-dependent protein kinase activity	2.52E-02
82	GO:0004601: peroxidase activity	2.55E-02
83	GO:0050897: cobalt ion binding	3.00E-02
84	GO:0004497: monooxygenase activity	3.16E-02
85	GO:0003746: translation elongation factor activity	3.20E-02
86	GO:0003697: single-stranded DNA binding	3.20E-02
87	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.20E-02
88	GO:0005507: copper ion binding	3.35E-02
89	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.41E-02
90	GO:0005525: GTP binding	4.00E-02
91	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.08E-02
92	GO:0046872: metal ion binding	4.10E-02
93	GO:0051287: NAD binding	4.39E-02
94	GO:0005509: calcium ion binding	4.67E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.74E-02
96	GO:0016298: lipase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.07E-06
2	GO:0005789: endoplasmic reticulum membrane	1.87E-04
3	GO:0030134: ER to Golgi transport vesicle	3.96E-04
4	GO:0031902: late endosome membrane	5.59E-04
5	GO:0046861: glyoxysomal membrane	6.47E-04
6	GO:0030139: endocytic vesicle	6.47E-04
7	GO:0016021: integral component of membrane	7.79E-04
8	GO:0070062: extracellular exosome	9.23E-04
9	GO:0005945: 6-phosphofructokinase complex	1.56E-03
10	GO:0005771: multivesicular body	1.91E-03
11	GO:0030904: retromer complex	1.91E-03
12	GO:0016272: prefoldin complex	2.30E-03
13	GO:0005801: cis-Golgi network	2.30E-03
14	GO:0030529: intracellular ribonucleoprotein complex	2.34E-03
15	GO:0009514: glyoxysome	3.58E-03
16	GO:0000148: 1,3-beta-D-glucan synthase complex	3.58E-03
17	GO:0005736: DNA-directed RNA polymerase I complex	4.05E-03
18	GO:0017119: Golgi transport complex	5.05E-03
19	GO:0005829: cytosol	5.94E-03
20	GO:0005764: lysosome	7.28E-03
21	GO:0005783: endoplasmic reticulum	7.56E-03
22	GO:0016020: membrane	8.42E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.26E-02
24	GO:0005887: integral component of plasma membrane	1.54E-02
25	GO:0009504: cell plate	1.64E-02
26	GO:0000145: exocyst	1.81E-02
27	GO:0032580: Golgi cisterna membrane	1.98E-02
28	GO:0000932: P-body	2.24E-02
29	GO:0005773: vacuole	2.85E-02
30	GO:0005794: Golgi apparatus	2.92E-02
31	GO:0048046: apoplast	3.82E-02
32	GO:0005802: trans-Golgi network	3.87E-02
33	GO:0005768: endosome	4.53E-02