co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042425: choline biosynthetic process	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0035304: regulation of protein dephosphorylation	1.52E-08
4	GO:0019684: photosynthesis, light reaction	2.36E-08
5	GO:0010207: photosystem II assembly	4.96E-08
6	GO:0042549: photosystem II stabilization	7.80E-07
7	GO:0010205: photoinhibition	4.63E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	6.90E-06
9	GO:0010480: microsporocyte differentiation	1.30E-05
10	GO:0034337: RNA folding	1.30E-05
11	GO:0000476: maturation of 4.5S rRNA	1.30E-05
12	GO:0000967: rRNA 5'-end processing	1.30E-05
13	GO:0018026: peptidyl-lysine monomethylation	3.42E-05
14	GO:0034470: ncRNA processing	3.42E-05
15	GO:0090391: granum assembly	6.16E-05
16	GO:0015979: photosynthesis	9.23E-05
17	GO:0006656: phosphatidylcholine biosynthetic process	1.68E-04
18	GO:1901259: chloroplast rRNA processing	2.53E-04
19	GO:0048528: post-embryonic root development	2.99E-04
20	GO:0048437: floral organ development	2.99E-04
21	GO:0009245: lipid A biosynthetic process	4.45E-04
22	GO:0010206: photosystem II repair	4.45E-04
23	GO:0048229: gametophyte development	6.03E-04
24	GO:0010075: regulation of meristem growth	7.14E-04
25	GO:0009934: regulation of meristem structural organization	7.72E-04
26	GO:0016998: cell wall macromolecule catabolic process	1.08E-03
27	GO:0048653: anther development	1.41E-03
28	GO:0042335: cuticle development	1.41E-03
29	GO:0010183: pollen tube guidance	1.63E-03
30	GO:0000302: response to reactive oxygen species	1.70E-03
31	GO:0010193: response to ozone	1.70E-03
32	GO:0009627: systemic acquired resistance	2.35E-03
33	GO:0010411: xyloglucan metabolic process	2.43E-03
34	GO:0034599: cellular response to oxidative stress	3.15E-03
35	GO:0042546: cell wall biogenesis	3.73E-03
36	GO:0010224: response to UV-B	4.55E-03
37	GO:0042742: defense response to bacterium	5.68E-03
38	GO:0042744: hydrogen peroxide catabolic process	7.23E-03
39	GO:0006633: fatty acid biosynthetic process	7.74E-03
40	GO:0007623: circadian rhythm	8.26E-03
41	GO:0009826: unidimensional cell growth	1.09E-02
42	GO:0009860: pollen tube growth	1.18E-02
43	GO:0080167: response to karrikin	1.31E-02
44	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.34E-02
45	GO:0032259: methylation	1.67E-02
46	GO:0006629: lipid metabolic process	1.72E-02
47	GO:0009735: response to cytokinin	2.43E-02
48	GO:0009416: response to light stimulus	2.59E-02
49	GO:0009555: pollen development	2.59E-02
50	GO:0009611: response to wounding	2.63E-02
51	GO:0071555: cell wall organization	4.29E-02
52	GO:0030154: cell differentiation	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0010242: oxygen evolving activity	0.00E+00
2	GO:0008266: poly(U) RNA binding	4.96E-08
3	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.30E-05
4	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.30E-05
5	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.42E-05
6	GO:0016279: protein-lysine N-methyltransferase activity	1.30E-04
7	GO:0031177: phosphopantetheine binding	2.10E-04
8	GO:0004130: cytochrome-c peroxidase activity	2.10E-04
9	GO:0000035: acyl binding	2.53E-04
10	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.46E-04
11	GO:0047372: acylglycerol lipase activity	6.03E-04
12	GO:0005509: calcium ion binding	6.50E-04
13	GO:0031072: heat shock protein binding	7.14E-04
14	GO:0033612: receptor serine/threonine kinase binding	1.08E-03
15	GO:0003756: protein disulfide isomerase activity	1.27E-03
16	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.70E-03
17	GO:0016168: chlorophyll binding	2.26E-03
18	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.43E-03
19	GO:0051082: unfolded protein binding	5.66E-03
20	GO:0019843: rRNA binding	6.61E-03
21	GO:0003729: mRNA binding	8.44E-03
22	GO:0003743: translation initiation factor activity	9.21E-03
23	GO:0008168: methyltransferase activity	1.09E-02
24	GO:0004601: peroxidase activity	1.12E-02
25	GO:0016787: hydrolase activity	1.22E-02
26	GO:0005516: calmodulin binding	3.47E-02
27	GO:0005515: protein binding	3.57E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009534: chloroplast thylakoid	5.37E-24
3	GO:0009535: chloroplast thylakoid membrane	5.53E-20
4	GO:0009507: chloroplast	4.48E-15
5	GO:0009543: chloroplast thylakoid lumen	1.77E-13
6	GO:0030095: chloroplast photosystem II	2.54E-13
7	GO:0009579: thylakoid	4.51E-10
8	GO:0030093: chloroplast photosystem I	1.52E-08
9	GO:0031977: thylakoid lumen	3.01E-08
10	GO:0009654: photosystem II oxygen evolving complex	1.11E-07
11	GO:0009570: chloroplast stroma	1.19E-07
12	GO:0019898: extrinsic component of membrane	4.36E-07
13	GO:0009508: plastid chromosome	9.76E-06
14	GO:0009941: chloroplast envelope	1.18E-05
15	GO:0009522: photosystem I	4.37E-05
16	GO:0009295: nucleoid	6.90E-05
17	GO:0042646: plastid nucleoid	9.36E-05
18	GO:0055035: plastid thylakoid membrane	1.68E-04
19	GO:0016363: nuclear matrix	2.53E-04
20	GO:0010287: plastoglobule	4.16E-04
21	GO:0042644: chloroplast nucleoid	4.45E-04
22	GO:0032040: small-subunit processome	6.58E-04
23	GO:0009523: photosystem II	1.63E-03
24	GO:0048046: apoplast	3.59E-03
25	GO:0009706: chloroplast inner membrane	5.66E-03
26	GO:0016021: integral component of membrane	3.58E-02
27	GO:0005840: ribosome	4.43E-02