co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010401: pectic galactan metabolic process	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0051553: flavone biosynthetic process	0.00E+00
4	GO:0006468: protein phosphorylation	2.46E-11
5	GO:0042742: defense response to bacterium	3.13E-09
6	GO:0006952: defense response	5.95E-06
7	GO:0007166: cell surface receptor signaling pathway	9.97E-06
8	GO:0001676: long-chain fatty acid metabolic process	4.29E-05
9	GO:0000187: activation of MAPK activity	4.29E-05
10	GO:0000302: response to reactive oxygen species	4.32E-05
11	GO:0060548: negative regulation of cell death	7.62E-05
12	GO:0034976: response to endoplasmic reticulum stress	1.30E-04
13	GO:0008219: cell death	1.42E-04
14	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.33E-04
15	GO:0055081: anion homeostasis	3.50E-04
16	GO:0002143: tRNA wobble position uridine thiolation	3.50E-04
17	GO:0006643: membrane lipid metabolic process	3.50E-04
18	GO:0006680: glucosylceramide catabolic process	3.50E-04
19	GO:0060862: negative regulation of floral organ abscission	3.50E-04
20	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	3.50E-04
21	GO:0034975: protein folding in endoplasmic reticulum	3.50E-04
22	GO:0016337: single organismal cell-cell adhesion	3.50E-04
23	GO:0000077: DNA damage checkpoint	3.50E-04
24	GO:0006805: xenobiotic metabolic process	3.50E-04
25	GO:0006422: aspartyl-tRNA aminoacylation	3.50E-04
26	GO:0045454: cell redox homeostasis	4.24E-04
27	GO:0030163: protein catabolic process	6.14E-04
28	GO:0050832: defense response to fungus	6.15E-04
29	GO:0019483: beta-alanine biosynthetic process	7.62E-04
30	GO:0031349: positive regulation of defense response	7.62E-04
31	GO:1902000: homogentisate catabolic process	7.62E-04
32	GO:0008535: respiratory chain complex IV assembly	7.62E-04
33	GO:0015012: heparan sulfate proteoglycan biosynthetic process	7.62E-04
34	GO:0002221: pattern recognition receptor signaling pathway	7.62E-04
35	GO:0015914: phospholipid transport	7.62E-04
36	GO:2000072: regulation of defense response to fungus, incompatible interaction	7.62E-04
37	GO:0010155: regulation of proton transport	7.62E-04
38	GO:0006024: glycosaminoglycan biosynthetic process	7.62E-04
39	GO:0052541: plant-type cell wall cellulose metabolic process	7.62E-04
40	GO:0040020: regulation of meiotic nuclear division	7.62E-04
41	GO:0006212: uracil catabolic process	7.62E-04
42	GO:0009620: response to fungus	7.84E-04
43	GO:0010498: proteasomal protein catabolic process	1.23E-03
44	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	1.23E-03
45	GO:1900140: regulation of seedling development	1.23E-03
46	GO:0006517: protein deglycosylation	1.23E-03
47	GO:0009072: aromatic amino acid family metabolic process	1.23E-03
48	GO:0009407: toxin catabolic process	1.31E-03
49	GO:0006499: N-terminal protein myristoylation	1.31E-03
50	GO:0070588: calcium ion transmembrane transport	1.44E-03
51	GO:0072583: clathrin-dependent endocytosis	1.78E-03
52	GO:0071323: cellular response to chitin	1.78E-03
53	GO:0048194: Golgi vesicle budding	1.78E-03
54	GO:0002239: response to oomycetes	1.78E-03
55	GO:0010150: leaf senescence	2.06E-03
56	GO:0031348: negative regulation of defense response	2.36E-03
57	GO:0009814: defense response, incompatible interaction	2.36E-03
58	GO:2000038: regulation of stomatal complex development	2.38E-03
59	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	2.38E-03
60	GO:0010188: response to microbial phytotoxin	2.38E-03
61	GO:0080142: regulation of salicylic acid biosynthetic process	2.38E-03
62	GO:0006564: L-serine biosynthetic process	3.05E-03
63	GO:0031365: N-terminal protein amino acid modification	3.05E-03
64	GO:0006665: sphingolipid metabolic process	3.05E-03
65	GO:0006662: glycerol ether metabolic process	3.53E-03
66	GO:0060918: auxin transport	3.76E-03
67	GO:0010942: positive regulation of cell death	3.76E-03
68	GO:0006751: glutathione catabolic process	3.76E-03
69	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	3.76E-03
70	GO:0006623: protein targeting to vacuole	4.07E-03
71	GO:0010193: response to ozone	4.36E-03
72	GO:0015031: protein transport	4.46E-03
73	GO:0009612: response to mechanical stimulus	4.54E-03
74	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.54E-03
75	GO:0006694: steroid biosynthetic process	4.54E-03
76	GO:2000037: regulation of stomatal complex patterning	4.54E-03
77	GO:0000911: cytokinesis by cell plate formation	4.54E-03
78	GO:0070370: cellular heat acclimation	5.36E-03
79	GO:0010044: response to aluminum ion	5.36E-03
80	GO:0046470: phosphatidylcholine metabolic process	5.36E-03
81	GO:0043090: amino acid import	5.36E-03
82	GO:0071446: cellular response to salicylic acid stimulus	5.36E-03
83	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	5.36E-03
84	GO:0010200: response to chitin	5.86E-03
85	GO:0009819: drought recovery	6.22E-03
86	GO:0006491: N-glycan processing	6.22E-03
87	GO:0000028: ribosomal small subunit assembly	6.22E-03
88	GO:0009615: response to virus	6.30E-03
89	GO:0009607: response to biotic stimulus	6.66E-03
90	GO:0046686: response to cadmium ion	6.92E-03
91	GO:0006367: transcription initiation from RNA polymerase II promoter	7.14E-03
92	GO:0043562: cellular response to nitrogen levels	7.14E-03
93	GO:2000031: regulation of salicylic acid mediated signaling pathway	7.14E-03
94	GO:0009699: phenylpropanoid biosynthetic process	7.14E-03
95	GO:0006002: fructose 6-phosphate metabolic process	7.14E-03
96	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	7.14E-03
97	GO:0006886: intracellular protein transport	7.68E-03
98	GO:0010332: response to gamma radiation	8.10E-03
99	GO:0046685: response to arsenic-containing substance	8.10E-03
100	GO:0009821: alkaloid biosynthetic process	8.10E-03
101	GO:0006979: response to oxidative stress	8.25E-03
102	GO:0009813: flavonoid biosynthetic process	8.66E-03
103	GO:0048268: clathrin coat assembly	9.10E-03
104	GO:0010205: photoinhibition	9.10E-03
105	GO:0043067: regulation of programmed cell death	9.10E-03
106	GO:0010043: response to zinc ion	9.53E-03
107	GO:0009751: response to salicylic acid	9.85E-03
108	GO:0006995: cellular response to nitrogen starvation	1.01E-02
109	GO:0000103: sulfate assimilation	1.01E-02
110	GO:0043069: negative regulation of programmed cell death	1.01E-02
111	GO:0045087: innate immune response	1.05E-02
112	GO:0034599: cellular response to oxidative stress	1.09E-02
113	GO:0072593: reactive oxygen species metabolic process	1.12E-02
114	GO:0019684: photosynthesis, light reaction	1.12E-02
115	GO:0015706: nitrate transport	1.24E-02
116	GO:0009617: response to bacterium	1.24E-02
117	GO:0010582: floral meristem determinacy	1.24E-02
118	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.24E-02
119	GO:0006631: fatty acid metabolic process	1.24E-02
120	GO:0007165: signal transduction	1.29E-02
121	GO:0006807: nitrogen compound metabolic process	1.35E-02
122	GO:0010229: inflorescence development	1.35E-02
123	GO:0055046: microgametogenesis	1.35E-02
124	GO:0009409: response to cold	1.46E-02
125	GO:0002237: response to molecule of bacterial origin	1.48E-02
126	GO:0034605: cellular response to heat	1.48E-02
127	GO:0009636: response to toxic substance	1.52E-02
128	GO:0010167: response to nitrate	1.60E-02
129	GO:0010053: root epidermal cell differentiation	1.60E-02
130	GO:0042343: indole glucosinolate metabolic process	1.60E-02
131	GO:0000165: MAPK cascade	1.64E-02
132	GO:0031347: regulation of defense response	1.64E-02
133	GO:0000027: ribosomal large subunit assembly	1.86E-02
134	GO:0030150: protein import into mitochondrial matrix	1.86E-02
135	GO:0010187: negative regulation of seed germination	1.86E-02
136	GO:2000377: regulation of reactive oxygen species metabolic process	1.86E-02
137	GO:0006487: protein N-linked glycosylation	1.86E-02
138	GO:0006874: cellular calcium ion homeostasis	2.00E-02
139	GO:0009735: response to cytokinin	2.08E-02
140	GO:0098542: defense response to other organism	2.13E-02
141	GO:0080167: response to karrikin	2.27E-02
142	GO:0009626: plant-type hypersensitive response	2.30E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.37E-02
144	GO:0009625: response to insect	2.42E-02
145	GO:0010227: floral organ abscission	2.42E-02
146	GO:0009553: embryo sac development	2.53E-02
147	GO:0009561: megagametogenesis	2.57E-02
148	GO:0009306: protein secretion	2.57E-02
149	GO:0042147: retrograde transport, endosome to Golgi	2.72E-02
150	GO:0042391: regulation of membrane potential	2.88E-02
151	GO:0006508: proteolysis	2.88E-02
152	GO:0010051: xylem and phloem pattern formation	2.88E-02
153	GO:0010087: phloem or xylem histogenesis	2.88E-02
154	GO:0042631: cellular response to water deprivation	2.88E-02
155	GO:0010197: polar nucleus fusion	3.04E-02
156	GO:0008360: regulation of cell shape	3.04E-02
157	GO:0048544: recognition of pollen	3.20E-02
158	GO:0061025: membrane fusion	3.20E-02
159	GO:0009646: response to absence of light	3.20E-02
160	GO:0010183: pollen tube guidance	3.36E-02
161	GO:0002229: defense response to oomycetes	3.53E-02
162	GO:0006891: intra-Golgi vesicle-mediated transport	3.53E-02
163	GO:0007264: small GTPase mediated signal transduction	3.70E-02
164	GO:0009790: embryo development	3.80E-02
165	GO:0055114: oxidation-reduction process	4.03E-02
166	GO:0006464: cellular protein modification process	4.04E-02
167	GO:0019760: glucosinolate metabolic process	4.04E-02
168	GO:0006904: vesicle docking involved in exocytosis	4.22E-02
169	GO:0016310: phosphorylation	4.42E-02
170	GO:0001666: response to hypoxia	4.58E-02
171	GO:0009816: defense response to bacterium, incompatible interaction	4.77E-02
172	GO:0009627: systemic acquired resistance	4.95E-02
173	GO:0042128: nitrate assimilation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0015370: solute:sodium symporter activity	0.00E+00
6	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
7	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
8	GO:0003837: beta-ureidopropionase activity	0.00E+00
9	GO:0004164: diphthine synthase activity	0.00E+00
10	GO:0070577: lysine-acetylated histone binding	0.00E+00
11	GO:0005524: ATP binding	1.65E-11
12	GO:0016301: kinase activity	2.35E-11
13	GO:0004674: protein serine/threonine kinase activity	1.93E-08
14	GO:0003756: protein disulfide isomerase activity	1.74E-05
15	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.25E-05
16	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.71E-05
17	GO:0004190: aspartic-type endopeptidase activity	1.11E-04
18	GO:0102391: decanoate--CoA ligase activity	2.33E-04
19	GO:0004012: phospholipid-translocating ATPase activity	2.33E-04
20	GO:0043295: glutathione binding	3.02E-04
21	GO:0004467: long-chain fatty acid-CoA ligase activity	3.02E-04
22	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	3.50E-04
23	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	3.50E-04
24	GO:0004348: glucosylceramidase activity	3.50E-04
25	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	3.50E-04
26	GO:0032050: clathrin heavy chain binding	3.50E-04
27	GO:0015085: calcium ion transmembrane transporter activity	3.50E-04
28	GO:0004815: aspartate-tRNA ligase activity	3.50E-04
29	GO:0004708: MAP kinase kinase activity	3.80E-04
30	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.80E-04
31	GO:0005516: calmodulin binding	4.04E-04
32	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.14E-04
33	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.18E-04
34	GO:0038199: ethylene receptor activity	7.62E-04
35	GO:0004713: protein tyrosine kinase activity	7.69E-04
36	GO:0005388: calcium-transporting ATPase activity	1.14E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.23E-03
38	GO:0004557: alpha-galactosidase activity	1.23E-03
39	GO:0003840: gamma-glutamyltransferase activity	1.23E-03
40	GO:0036374: glutathione hydrolase activity	1.23E-03
41	GO:0052692: raffinose alpha-galactosidase activity	1.23E-03
42	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	1.23E-03
43	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.23E-03
44	GO:0004792: thiosulfate sulfurtransferase activity	1.78E-03
45	GO:0051740: ethylene binding	1.78E-03
46	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.78E-03
47	GO:0004364: glutathione transferase activity	2.04E-03
48	GO:0033612: receptor serine/threonine kinase binding	2.16E-03
49	GO:0070628: proteasome binding	2.38E-03
50	GO:0015204: urea transmembrane transporter activity	2.38E-03
51	GO:0047134: protein-disulfide reductase activity	3.03E-03
52	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	3.05E-03
53	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.05E-03
54	GO:0045431: flavonol synthase activity	3.05E-03
55	GO:0008641: small protein activating enzyme activity	3.05E-03
56	GO:0030276: clathrin binding	3.53E-03
57	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.76E-03
58	GO:0030976: thiamine pyrophosphate binding	3.76E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	3.79E-03
60	GO:0004602: glutathione peroxidase activity	4.54E-03
61	GO:0015035: protein disulfide oxidoreductase activity	5.12E-03
62	GO:0003872: 6-phosphofructokinase activity	5.36E-03
63	GO:0030515: snoRNA binding	5.36E-03
64	GO:0004143: diacylglycerol kinase activity	5.36E-03
65	GO:0008235: metalloexopeptidase activity	5.36E-03
66	GO:0004672: protein kinase activity	6.09E-03
67	GO:0052747: sinapyl alcohol dehydrogenase activity	6.22E-03
68	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	7.14E-03
69	GO:0003843: 1,3-beta-D-glucan synthase activity	7.14E-03
70	GO:0004630: phospholipase D activity	7.14E-03
71	GO:0008565: protein transporter activity	8.26E-03
72	GO:0016844: strictosidine synthase activity	9.10E-03
73	GO:0015112: nitrate transmembrane transporter activity	9.10E-03
74	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	9.10E-03
75	GO:0050897: cobalt ion binding	9.53E-03
76	GO:0004673: protein histidine kinase activity	1.01E-02
77	GO:0005545: 1-phosphatidylinositol binding	1.01E-02
78	GO:0001054: RNA polymerase I activity	1.12E-02
79	GO:0004177: aminopeptidase activity	1.12E-02
80	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.14E-02
81	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.24E-02
82	GO:0000155: phosphorelay sensor kinase activity	1.35E-02
83	GO:0000175: 3'-5'-exoribonuclease activity	1.35E-02
84	GO:0004535: poly(A)-specific ribonuclease activity	1.48E-02
85	GO:0015293: symporter activity	1.52E-02
86	GO:0008061: chitin binding	1.60E-02
87	GO:0003712: transcription cofactor activity	1.60E-02
88	GO:0004970: ionotropic glutamate receptor activity	1.60E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	1.60E-02
90	GO:0030552: cAMP binding	1.60E-02
91	GO:0030553: cGMP binding	1.60E-02
92	GO:0000287: magnesium ion binding	1.69E-02
93	GO:0005515: protein binding	1.77E-02
94	GO:0003954: NADH dehydrogenase activity	1.86E-02
95	GO:0043531: ADP binding	1.94E-02
96	GO:0005216: ion channel activity	2.00E-02
97	GO:0004707: MAP kinase activity	2.13E-02
98	GO:0008408: 3'-5' exonuclease activity	2.13E-02
99	GO:0035251: UDP-glucosyltransferase activity	2.13E-02
100	GO:0004540: ribonuclease activity	2.13E-02
101	GO:0046872: metal ion binding	2.33E-02
102	GO:0000166: nucleotide binding	2.38E-02
103	GO:0008514: organic anion transmembrane transporter activity	2.57E-02
104	GO:0005249: voltage-gated potassium channel activity	2.88E-02
105	GO:0030551: cyclic nucleotide binding	2.88E-02
106	GO:0004872: receptor activity	3.36E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005886: plasma membrane	3.78E-13
4	GO:0016021: integral component of membrane	1.59E-07
5	GO:0030014: CCR4-NOT complex	3.50E-04
6	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	3.50E-04
7	GO:0005783: endoplasmic reticulum	5.86E-04
8	GO:0030665: clathrin-coated vesicle membrane	6.60E-04
9	GO:0031304: intrinsic component of mitochondrial inner membrane	7.62E-04
10	GO:0017119: Golgi transport complex	7.69E-04
11	GO:0005789: endoplasmic reticulum membrane	7.82E-04
12	GO:0005788: endoplasmic reticulum lumen	8.91E-04
13	GO:0005887: integral component of plasma membrane	1.19E-03
14	GO:0046861: glyoxysomal membrane	1.23E-03
15	GO:0005794: Golgi apparatus	1.68E-03
16	GO:0070062: extracellular exosome	1.78E-03
17	GO:0031902: late endosome membrane	1.94E-03
18	GO:0008250: oligosaccharyltransferase complex	3.05E-03
19	GO:0005945: 6-phosphofructokinase complex	3.05E-03
20	GO:0005773: vacuole	3.38E-03
21	GO:0030904: retromer complex	3.76E-03
22	GO:0009504: cell plate	4.07E-03
23	GO:0030131: clathrin adaptor complex	6.22E-03
24	GO:0000148: 1,3-beta-D-glucan synthase complex	7.14E-03
25	GO:0000326: protein storage vacuole	7.14E-03
26	GO:0009514: glyoxysome	7.14E-03
27	GO:0005736: DNA-directed RNA polymerase I complex	8.10E-03
28	GO:0030125: clathrin vesicle coat	1.01E-02
29	GO:0009506: plasmodesma	1.07E-02
30	GO:0032040: small-subunit processome	1.24E-02
31	GO:0009505: plant-type cell wall	1.26E-02
32	GO:0005795: Golgi stack	1.60E-02
33	GO:0005802: trans-Golgi network	1.61E-02
34	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.94E-02
35	GO:0005905: clathrin-coated pit	2.13E-02
36	GO:0005839: proteasome core complex	2.13E-02
37	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.57E-02
38	GO:0030136: clathrin-coated vesicle	2.72E-02
39	GO:0019898: extrinsic component of membrane	3.36E-02
40	GO:0005774: vacuolar membrane	3.66E-02
41	GO:0000145: exocyst	3.70E-02
42	GO:0048046: apoplast	4.03E-02
43	GO:0005829: cytosol	4.20E-02
44	GO:0000932: P-body	4.58E-02