co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080053: response to phenylalanine	0.00E+00
2	GO:0006793: phosphorus metabolic process	0.00E+00
3	GO:0051238: sequestering of metal ion	0.00E+00
4	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
5	GO:0010055: atrichoblast differentiation	0.00E+00
6	GO:0043201: response to leucine	0.00E+00
7	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
8	GO:0080052: response to histidine	0.00E+00
9	GO:0009620: response to fungus	2.81E-05
10	GO:0006536: glutamate metabolic process	3.60E-05
11	GO:0006874: cellular calcium ion homeostasis	6.87E-05
12	GO:0032491: detection of molecule of fungal origin	2.25E-04
13	GO:0032107: regulation of response to nutrient levels	2.25E-04
14	GO:0051938: L-glutamate import	2.25E-04
15	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.25E-04
16	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.25E-04
17	GO:0042939: tripeptide transport	5.00E-04
18	GO:0043091: L-arginine import	5.00E-04
19	GO:0051592: response to calcium ion	5.00E-04
20	GO:0080183: response to photooxidative stress	5.00E-04
21	GO:0015802: basic amino acid transport	5.00E-04
22	GO:0009805: coumarin biosynthetic process	5.00E-04
23	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	5.00E-04
24	GO:0002240: response to molecule of oomycetes origin	5.00E-04
25	GO:0009817: defense response to fungus, incompatible interaction	5.19E-04
26	GO:0006468: protein phosphorylation	5.68E-04
27	GO:0009407: toxin catabolic process	5.87E-04
28	GO:0010351: lithium ion transport	8.13E-04
29	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	8.13E-04
30	GO:0006556: S-adenosylmethionine biosynthetic process	8.13E-04
31	GO:0007165: signal transduction	1.01E-03
32	GO:0009636: response to toxic substance	1.11E-03
33	GO:0016998: cell wall macromolecule catabolic process	1.15E-03
34	GO:0006882: cellular zinc ion homeostasis	1.16E-03
35	GO:0070301: cellular response to hydrogen peroxide	1.16E-03
36	GO:1901002: positive regulation of response to salt stress	1.54E-03
37	GO:0042938: dipeptide transport	1.54E-03
38	GO:0045227: capsule polysaccharide biosynthetic process	1.54E-03
39	GO:0046345: abscisic acid catabolic process	1.54E-03
40	GO:0033358: UDP-L-arabinose biosynthetic process	1.54E-03
41	GO:0010200: response to chitin	2.18E-03
42	GO:0050832: defense response to fungus	2.35E-03
43	GO:0002238: response to molecule of fungal origin	2.43E-03
44	GO:0006561: proline biosynthetic process	2.43E-03
45	GO:0015691: cadmium ion transport	2.43E-03
46	GO:0006555: methionine metabolic process	2.43E-03
47	GO:0045926: negative regulation of growth	2.91E-03
48	GO:0019509: L-methionine salvage from methylthioadenosine	2.91E-03
49	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.91E-03
50	GO:0051607: defense response to virus	3.13E-03
51	GO:0009615: response to virus	3.31E-03
52	GO:0030026: cellular manganese ion homeostasis	3.43E-03
53	GO:1900057: positive regulation of leaf senescence	3.43E-03
54	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.43E-03
55	GO:1900056: negative regulation of leaf senescence	3.43E-03
56	GO:0050829: defense response to Gram-negative bacterium	3.43E-03
57	GO:0010120: camalexin biosynthetic process	4.56E-03
58	GO:0010204: defense response signaling pathway, resistance gene-independent	4.56E-03
59	GO:0009699: phenylpropanoid biosynthetic process	4.56E-03
60	GO:0009821: alkaloid biosynthetic process	5.16E-03
61	GO:0009056: catabolic process	5.16E-03
62	GO:0055062: phosphate ion homeostasis	6.45E-03
63	GO:0006032: chitin catabolic process	6.45E-03
64	GO:0009688: abscisic acid biosynthetic process	6.45E-03
65	GO:0010162: seed dormancy process	6.45E-03
66	GO:0042742: defense response to bacterium	7.80E-03
67	GO:0006979: response to oxidative stress	7.91E-03
68	GO:0006855: drug transmembrane transport	8.22E-03
69	GO:0055046: microgametogenesis	8.57E-03
70	GO:0009718: anthocyanin-containing compound biosynthetic process	8.57E-03
71	GO:0006812: cation transport	8.84E-03
72	GO:0042538: hyperosmotic salinity response	8.84E-03
73	GO:0002237: response to molecule of bacterial origin	9.33E-03
74	GO:0009809: lignin biosynthetic process	9.50E-03
75	GO:0070588: calcium ion transmembrane transport	1.01E-02
76	GO:0009969: xyloglucan biosynthetic process	1.01E-02
77	GO:0009225: nucleotide-sugar metabolic process	1.01E-02
78	GO:0005992: trehalose biosynthetic process	1.17E-02
79	GO:0030150: protein import into mitochondrial matrix	1.17E-02
80	GO:0003333: amino acid transmembrane transport	1.34E-02
81	GO:0071456: cellular response to hypoxia	1.43E-02
82	GO:0019748: secondary metabolic process	1.43E-02
83	GO:0006730: one-carbon metabolic process	1.43E-02
84	GO:0071369: cellular response to ethylene stimulus	1.53E-02
85	GO:0010227: floral organ abscission	1.53E-02
86	GO:0006012: galactose metabolic process	1.53E-02
87	GO:0009693: ethylene biosynthetic process	1.53E-02
88	GO:0032259: methylation	1.55E-02
89	GO:0009751: response to salicylic acid	1.60E-02
90	GO:0009561: megagametogenesis	1.62E-02
91	GO:0042391: regulation of membrane potential	1.81E-02
92	GO:0006885: regulation of pH	1.91E-02
93	GO:0071472: cellular response to salt stress	1.91E-02
94	GO:0042744: hydrogen peroxide catabolic process	1.94E-02
95	GO:0006814: sodium ion transport	2.01E-02
96	GO:0042752: regulation of circadian rhythm	2.01E-02
97	GO:0006623: protein targeting to vacuole	2.11E-02
98	GO:0010150: leaf senescence	2.35E-02
99	GO:0071281: cellular response to iron ion	2.43E-02
100	GO:0006952: defense response	2.52E-02
101	GO:0010252: auxin homeostasis	2.54E-02
102	GO:0007166: cell surface receptor signaling pathway	2.69E-02
103	GO:0009617: response to bacterium	2.80E-02
104	GO:0009607: response to biotic stimulus	3.00E-02
105	GO:0009816: defense response to bacterium, incompatible interaction	3.00E-02
106	GO:0009627: systemic acquired resistance	3.12E-02
107	GO:0008219: cell death	3.48E-02
108	GO:0055114: oxidation-reduction process	3.51E-02
109	GO:0016310: phosphorylation	3.60E-02
110	GO:0009832: plant-type cell wall biogenesis	3.61E-02
111	GO:0048527: lateral root development	3.86E-02
112	GO:0045087: innate immune response	4.12E-02
113	GO:0009723: response to ethylene	4.19E-02
114	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.64E-02
115	GO:0006631: fatty acid metabolic process	4.66E-02
116	GO:0046777: protein autophosphorylation	4.80E-02
117	GO:0051707: response to other organism	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0016301: kinase activity	5.65E-06
3	GO:0004351: glutamate decarboxylase activity	1.97E-05
4	GO:0005496: steroid binding	5.76E-05
5	GO:0004674: protein serine/threonine kinase activity	1.17E-04
6	GO:0031219: levanase activity	2.25E-04
7	GO:0031127: alpha-(1,2)-fucosyltransferase activity	2.25E-04
8	GO:0051669: fructan beta-fructosidase activity	2.25E-04
9	GO:0008171: O-methyltransferase activity	4.12E-04
10	GO:0042937: tripeptide transporter activity	5.00E-04
11	GO:0004566: beta-glucuronidase activity	5.00E-04
12	GO:0010297: heteropolysaccharide binding	5.00E-04
13	GO:0005524: ATP binding	5.29E-04
14	GO:0030145: manganese ion binding	6.23E-04
15	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.23E-04
16	GO:0004970: ionotropic glutamate receptor activity	7.77E-04
17	GO:0005217: intracellular ligand-gated ion channel activity	7.77E-04
18	GO:0042409: caffeoyl-CoA O-methyltransferase activity	8.13E-04
19	GO:0004478: methionine adenosyltransferase activity	8.13E-04
20	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.13E-04
21	GO:0004364: glutathione transferase activity	9.12E-04
22	GO:0015189: L-lysine transmembrane transporter activity	1.16E-03
23	GO:0015181: arginine transmembrane transporter activity	1.16E-03
24	GO:0010279: indole-3-acetic acid amido synthetase activity	1.54E-03
25	GO:0009916: alternative oxidase activity	1.54E-03
26	GO:0015368: calcium:cation antiporter activity	1.54E-03
27	GO:0050373: UDP-arabinose 4-epimerase activity	1.54E-03
28	GO:0042936: dipeptide transporter activity	1.54E-03
29	GO:0015369: calcium:proton antiporter activity	1.54E-03
30	GO:0005313: L-glutamate transmembrane transporter activity	1.54E-03
31	GO:0045735: nutrient reservoir activity	1.71E-03
32	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.97E-03
33	GO:0010294: abscisic acid glucosyltransferase activity	1.97E-03
34	GO:0047714: galactolipase activity	2.43E-03
35	GO:0051920: peroxiredoxin activity	2.91E-03
36	GO:0102391: decanoate--CoA ligase activity	2.91E-03
37	GO:0003978: UDP-glucose 4-epimerase activity	2.91E-03
38	GO:0004467: long-chain fatty acid-CoA ligase activity	3.43E-03
39	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.43E-03
40	GO:0030246: carbohydrate binding	3.82E-03
41	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.97E-03
42	GO:0015491: cation:cation antiporter activity	3.98E-03
43	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.98E-03
44	GO:0016209: antioxidant activity	3.98E-03
45	GO:0009055: electron carrier activity	4.17E-03
46	GO:0015238: drug transmembrane transporter activity	4.53E-03
47	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.56E-03
48	GO:0005516: calmodulin binding	4.65E-03
49	GO:0008417: fucosyltransferase activity	5.16E-03
50	GO:0016844: strictosidine synthase activity	5.79E-03
51	GO:0015174: basic amino acid transmembrane transporter activity	5.79E-03
52	GO:0004568: chitinase activity	6.45E-03
53	GO:0008559: xenobiotic-transporting ATPase activity	7.13E-03
54	GO:0004601: peroxidase activity	7.57E-03
55	GO:0005388: calcium-transporting ATPase activity	8.57E-03
56	GO:0015266: protein channel activity	8.57E-03
57	GO:0050660: flavin adenine dinucleotide binding	9.11E-03
58	GO:0030552: cAMP binding	1.01E-02
59	GO:0030553: cGMP binding	1.01E-02
60	GO:0052689: carboxylic ester hydrolase activity	1.13E-02
61	GO:0001046: core promoter sequence-specific DNA binding	1.17E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.24E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.24E-02
64	GO:0005216: ion channel activity	1.26E-02
65	GO:0015035: protein disulfide oxidoreductase activity	1.40E-02
66	GO:0046872: metal ion binding	1.61E-02
67	GO:0005451: monovalent cation:proton antiporter activity	1.81E-02
68	GO:0005249: voltage-gated potassium channel activity	1.81E-02
69	GO:0030551: cyclic nucleotide binding	1.81E-02
70	GO:0030170: pyridoxal phosphate binding	1.89E-02
71	GO:0015299: solute:proton antiporter activity	2.01E-02
72	GO:0019901: protein kinase binding	2.11E-02
73	GO:0015297: antiporter activity	2.24E-02
74	GO:0015385: sodium:proton antiporter activity	2.43E-02
75	GO:0008194: UDP-glycosyltransferase activity	2.63E-02
76	GO:0016787: hydrolase activity	2.87E-02
77	GO:0051213: dioxygenase activity	2.88E-02
78	GO:0004806: triglyceride lipase activity	3.24E-02
79	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.48E-02
80	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.12E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	5.26E-06
2	GO:0005886: plasma membrane	1.39E-04
3	GO:0005770: late endosome	1.87E-03
4	GO:0032580: Golgi cisterna membrane	2.78E-03
5	GO:0031305: integral component of mitochondrial inner membrane	3.98E-03
6	GO:0000325: plant-type vacuole	4.98E-03
7	GO:0005765: lysosomal membrane	7.13E-03
8	GO:0005576: extracellular region	8.02E-03
9	GO:0070469: respiratory chain	1.26E-02
10	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.62E-02
11	GO:0043231: intracellular membrane-bounded organelle	1.85E-02
12	GO:0071944: cell periphery	2.43E-02
13	GO:0048046: apoplast	2.75E-02
14	GO:0005618: cell wall	3.22E-02
15	GO:0031902: late endosome membrane	4.66E-02