co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:0003400: regulation of COPII vesicle coating	6.06E-06
3	GO:0044376: RNA polymerase II complex import to nucleus	6.06E-06
4	GO:1990022: RNA polymerase III complex localization to nucleus	6.06E-06
5	GO:0009814: defense response, incompatible interaction	7.84E-06
6	GO:0019752: carboxylic acid metabolic process	1.65E-05
7	GO:0009410: response to xenobiotic stimulus	3.04E-05
8	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.10E-04
9	GO:0006605: protein targeting	1.86E-04
10	GO:0007034: vacuolar transport	4.30E-04
11	GO:0009863: salicylic acid mediated signaling pathway	5.33E-04
12	GO:0030433: ubiquitin-dependent ERAD pathway	6.40E-04
13	GO:0009306: protein secretion	7.14E-04
14	GO:0006520: cellular amino acid metabolic process	8.30E-04
15	GO:0030163: protein catabolic process	1.03E-03
16	GO:0009816: defense response to bacterium, incompatible interaction	1.25E-03
17	GO:0006888: ER to Golgi vesicle-mediated transport	1.34E-03
18	GO:0006511: ubiquitin-dependent protein catabolic process	1.55E-03
19	GO:0015031: protein transport	2.90E-03
20	GO:0009790: embryo development	3.95E-03
21	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.79E-03
22	GO:0010200: response to chitin	7.11E-03
23	GO:0008152: metabolic process	9.75E-03
24	GO:0051301: cell division	1.45E-02
25	GO:0016567: protein ubiquitination	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0005090: Sar guanyl-nucleotide exchange factor activity	6.06E-06
3	GO:0003924: GTPase activity	3.25E-05
4	GO:0036402: proteasome-activating ATPase activity	1.10E-04
5	GO:0051020: GTPase binding	1.34E-04
6	GO:0016831: carboxy-lyase activity	1.60E-04
7	GO:0017025: TBP-class protein binding	4.64E-04
8	GO:0043424: protein histidine kinase binding	5.68E-04
9	GO:0035251: UDP-glucosyltransferase activity	6.04E-04
10	GO:0005096: GTPase activator activity	1.47E-03
11	GO:0005525: GTP binding	1.87E-03
12	GO:0005198: structural molecule activity	2.14E-03
13	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.88E-03
14	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.88E-03
15	GO:0016758: transferase activity, transferring hexosyl groups	3.50E-03
16	GO:0030170: pyridoxal phosphate binding	3.82E-03
17	GO:0008194: UDP-glycosyltransferase activity	4.79E-03
18	GO:0042802: identical protein binding	5.22E-03
19	GO:0005515: protein binding	6.54E-03
20	GO:0061630: ubiquitin protein ligase activity	7.19E-03
21	GO:0016887: ATPase activity	1.24E-02
22	GO:0000166: nucleotide binding	1.37E-02
23	GO:0004842: ubiquitin-protein transferase activity	2.84E-02

Rank	GO Term	Adjusted P value
1	GO:0030139: endocytic vesicle	1.69E-08
2	GO:0005783: endoplasmic reticulum	1.94E-06
3	GO:0032585: multivesicular body membrane	4.72E-05
4	GO:0000502: proteasome complex	9.21E-05
5	GO:0005774: vacuolar membrane	1.13E-04
6	GO:0031597: cytosolic proteasome complex	1.34E-04
7	GO:0031595: nuclear proteasome complex	1.60E-04
8	GO:0005768: endosome	1.85E-04
9	GO:0031901: early endosome membrane	2.43E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	2.72E-04
11	GO:0008541: proteasome regulatory particle, lid subcomplex	3.33E-04
12	GO:0030176: integral component of endoplasmic reticulum membrane	4.64E-04
13	GO:0005769: early endosome	4.98E-04
14	GO:0031902: late endosome membrane	1.87E-03
15	GO:0005886: plasma membrane	2.87E-03
16	GO:0005789: endoplasmic reticulum membrane	3.47E-03
17	GO:0005623: cell	3.63E-03
18	GO:0005874: microtubule	6.78E-03
19	GO:0016020: membrane	7.98E-03
20	GO:0043231: intracellular membrane-bounded organelle	9.75E-03
21	GO:0005802: trans-Golgi network	1.91E-02
22	GO:0005622: intracellular	2.05E-02
23	GO:0009506: plasmodesma	3.01E-02
24	GO:0005829: cytosol	3.70E-02
25	GO:0005794: Golgi apparatus	4.08E-02