Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006182: cGMP biosynthetic process0.00E+00
2GO:0072722: response to amitrole0.00E+00
3GO:0006592: ornithine biosynthetic process0.00E+00
4GO:0046109: uridine biosynthetic process0.00E+00
5GO:0080053: response to phenylalanine0.00E+00
6GO:0002376: immune system process0.00E+00
7GO:0010360: negative regulation of anion channel activity0.00E+00
8GO:0043201: response to leucine0.00E+00
9GO:0032497: detection of lipopolysaccharide0.00E+00
10GO:0006983: ER overload response0.00E+00
11GO:0006793: phosphorus metabolic process0.00E+00
12GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
13GO:0080052: response to histidine0.00E+00
14GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
15GO:0048227: plasma membrane to endosome transport0.00E+00
16GO:0000188: inactivation of MAPK activity0.00E+00
17GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
18GO:0006468: protein phosphorylation3.31E-07
19GO:0010150: leaf senescence1.60E-05
20GO:0010120: camalexin biosynthetic process2.64E-05
21GO:0009617: response to bacterium2.76E-05
22GO:0043069: negative regulation of programmed cell death6.17E-05
23GO:0000266: mitochondrial fission9.65E-05
24GO:0009697: salicylic acid biosynthetic process1.63E-04
25GO:0006014: D-ribose metabolic process2.32E-04
26GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.32E-04
27GO:0006874: cellular calcium ion homeostasis2.60E-04
28GO:0071456: cellular response to hypoxia3.34E-04
29GO:0030433: ubiquitin-dependent ERAD pathway3.34E-04
30GO:0035266: meristem growth4.23E-04
31GO:0071586: CAAX-box protein processing4.23E-04
32GO:0048363: mucilage pectin metabolic process4.23E-04
33GO:0007292: female gamete generation4.23E-04
34GO:0051245: negative regulation of cellular defense response4.23E-04
35GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.23E-04
36GO:0006481: C-terminal protein methylation4.23E-04
37GO:1901183: positive regulation of camalexin biosynthetic process4.23E-04
38GO:0010265: SCF complex assembly4.23E-04
39GO:1902361: mitochondrial pyruvate transmembrane transport4.23E-04
40GO:0080120: CAAX-box protein maturation4.23E-04
41GO:0016559: peroxisome fission5.03E-04
42GO:0042742: defense response to bacterium5.49E-04
43GO:0006952: defense response7.32E-04
44GO:0009821: alkaloid biosynthetic process7.36E-04
45GO:0008202: steroid metabolic process8.68E-04
46GO:0009727: detection of ethylene stimulus9.16E-04
47GO:0043066: negative regulation of apoptotic process9.16E-04
48GO:0006850: mitochondrial pyruvate transport9.16E-04
49GO:0042939: tripeptide transport9.16E-04
50GO:0051788: response to misfolded protein9.16E-04
51GO:0042325: regulation of phosphorylation9.16E-04
52GO:0019441: tryptophan catabolic process to kynurenine9.16E-04
53GO:0051592: response to calcium ion9.16E-04
54GO:0080183: response to photooxidative stress9.16E-04
55GO:0018022: peptidyl-lysine methylation9.16E-04
56GO:0055114: oxidation-reduction process9.44E-04
57GO:0009682: induced systemic resistance1.16E-03
58GO:0009615: response to virus1.18E-03
59GO:0010272: response to silver ion1.49E-03
60GO:0060968: regulation of gene silencing1.49E-03
61GO:0010359: regulation of anion channel activity1.49E-03
62GO:0010351: lithium ion transport1.49E-03
63GO:0009817: defense response to fungus, incompatible interaction1.65E-03
64GO:0010311: lateral root formation1.76E-03
65GO:0034219: carbohydrate transmembrane transport2.15E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch2.15E-03
67GO:0006612: protein targeting to membrane2.15E-03
68GO:0072334: UDP-galactose transmembrane transport2.15E-03
69GO:0009399: nitrogen fixation2.15E-03
70GO:0080001: mucilage extrusion from seed coat2.15E-03
71GO:0006882: cellular zinc ion homeostasis2.15E-03
72GO:0010116: positive regulation of abscisic acid biosynthetic process2.15E-03
73GO:0046777: protein autophosphorylation2.44E-03
74GO:0016998: cell wall macromolecule catabolic process2.86E-03
75GO:0010363: regulation of plant-type hypersensitive response2.89E-03
76GO:0042991: transcription factor import into nucleus2.89E-03
77GO:0080142: regulation of salicylic acid biosynthetic process2.89E-03
78GO:0042938: dipeptide transport2.89E-03
79GO:0006542: glutamine biosynthetic process2.89E-03
80GO:0010222: stem vascular tissue pattern formation2.89E-03
81GO:0007029: endoplasmic reticulum organization3.71E-03
82GO:0018344: protein geranylgeranylation3.71E-03
83GO:0010225: response to UV-C3.71E-03
84GO:0030308: negative regulation of cell growth3.71E-03
85GO:0005513: detection of calcium ion3.71E-03
86GO:0007166: cell surface receptor signaling pathway3.91E-03
87GO:0042538: hyperosmotic salinity response4.14E-03
88GO:0009751: response to salicylic acid4.20E-03
89GO:0048827: phyllome development4.59E-03
90GO:0048232: male gamete generation4.59E-03
91GO:0043248: proteasome assembly4.59E-03
92GO:1902456: regulation of stomatal opening4.59E-03
93GO:1900425: negative regulation of defense response to bacterium4.59E-03
94GO:0002238: response to molecule of fungal origin4.59E-03
95GO:0006561: proline biosynthetic process4.59E-03
96GO:0048544: recognition of pollen5.05E-03
97GO:0009851: auxin biosynthetic process5.42E-03
98GO:0019252: starch biosynthetic process5.42E-03
99GO:0042372: phylloquinone biosynthetic process5.53E-03
100GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.53E-03
101GO:0048280: vesicle fusion with Golgi apparatus5.53E-03
102GO:0098655: cation transmembrane transport5.53E-03
103GO:0009630: gravitropism6.20E-03
104GO:0007264: small GTPase mediated signal transduction6.20E-03
105GO:0009620: response to fungus6.33E-03
106GO:0006744: ubiquinone biosynthetic process6.54E-03
107GO:1900056: negative regulation of leaf senescence6.54E-03
108GO:0030026: cellular manganese ion homeostasis6.54E-03
109GO:0019745: pentacyclic triterpenoid biosynthetic process6.54E-03
110GO:1902074: response to salt6.54E-03
111GO:0010252: auxin homeostasis7.04E-03
112GO:0043068: positive regulation of programmed cell death7.60E-03
113GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.60E-03
114GO:0009819: drought recovery7.60E-03
115GO:0006605: protein targeting7.60E-03
116GO:0010078: maintenance of root meristem identity7.60E-03
117GO:1900150: regulation of defense response to fungus7.60E-03
118GO:2000070: regulation of response to water deprivation7.60E-03
119GO:0009808: lignin metabolic process8.73E-03
120GO:0015996: chlorophyll catabolic process8.73E-03
121GO:0009827: plant-type cell wall modification8.73E-03
122GO:0006526: arginine biosynthetic process8.73E-03
123GO:0030968: endoplasmic reticulum unfolded protein response8.73E-03
124GO:0017004: cytochrome complex assembly8.73E-03
125GO:0009607: response to biotic stimulus8.89E-03
126GO:0009627: systemic acquired resistance9.40E-03
127GO:0007338: single fertilization9.92E-03
128GO:0051865: protein autoubiquitination9.92E-03
129GO:0010112: regulation of systemic acquired resistance9.92E-03
130GO:0008219: cell death1.10E-02
131GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.12E-02
132GO:0006499: N-terminal protein myristoylation1.21E-02
133GO:0055062: phosphate ion homeostasis1.24E-02
134GO:0007064: mitotic sister chromatid cohesion1.24E-02
135GO:0006896: Golgi to vacuole transport1.24E-02
136GO:0006032: chitin catabolic process1.24E-02
137GO:0009688: abscisic acid biosynthetic process1.24E-02
138GO:0048829: root cap development1.24E-02
139GO:0046686: response to cadmium ion1.28E-02
140GO:0010015: root morphogenesis1.38E-02
141GO:0000038: very long-chain fatty acid metabolic process1.38E-02
142GO:0016310: phosphorylation1.38E-02
143GO:0009089: lysine biosynthetic process via diaminopimelate1.38E-02
144GO:0052544: defense response by callose deposition in cell wall1.38E-02
145GO:0000272: polysaccharide catabolic process1.38E-02
146GO:0015770: sucrose transport1.38E-02
147GO:0030148: sphingolipid biosynthetic process1.38E-02
148GO:0009867: jasmonic acid mediated signaling pathway1.40E-02
149GO:0045087: innate immune response1.40E-02
150GO:0032259: methylation1.46E-02
151GO:0071365: cellular response to auxin stimulus1.52E-02
152GO:0006790: sulfur compound metabolic process1.52E-02
153GO:0012501: programmed cell death1.52E-02
154GO:0002213: defense response to insect1.52E-02
155GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.65E-02
156GO:0006887: exocytosis1.66E-02
157GO:0009718: anthocyanin-containing compound biosynthetic process1.66E-02
158GO:0006626: protein targeting to mitochondrion1.66E-02
159GO:0042542: response to hydrogen peroxide1.73E-02
160GO:0009753: response to jasmonic acid1.73E-02
161GO:0002237: response to molecule of bacterial origin1.81E-02
162GO:0009933: meristem structural organization1.81E-02
163GO:0010167: response to nitrate1.96E-02
164GO:0005985: sucrose metabolic process1.96E-02
165GO:0090351: seedling development1.96E-02
166GO:0070588: calcium ion transmembrane transport1.96E-02
167GO:0046854: phosphatidylinositol phosphorylation1.96E-02
168GO:0000162: tryptophan biosynthetic process2.12E-02
169GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.19E-02
170GO:0009846: pollen germination2.27E-02
171GO:0080147: root hair cell development2.29E-02
172GO:0009863: salicylic acid mediated signaling pathway2.29E-02
173GO:2000377: regulation of reactive oxygen species metabolic process2.29E-02
174GO:0005992: trehalose biosynthetic process2.29E-02
175GO:0009809: lignin biosynthetic process2.44E-02
176GO:0010073: meristem maintenance2.45E-02
177GO:0010224: response to UV-B2.52E-02
178GO:0048278: vesicle docking2.62E-02
179GO:0015992: proton transport2.62E-02
180GO:0016226: iron-sulfur cluster assembly2.80E-02
181GO:0007005: mitochondrion organization2.80E-02
182GO:0031348: negative regulation of defense response2.80E-02
183GO:0006096: glycolytic process2.88E-02
184GO:0048367: shoot system development2.98E-02
185GO:0006012: galactose metabolic process2.98E-02
186GO:0071369: cellular response to ethylene stimulus2.98E-02
187GO:0010584: pollen exine formation3.16E-02
188GO:0019722: calcium-mediated signaling3.16E-02
189GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.34E-02
190GO:0042147: retrograde transport, endosome to Golgi3.34E-02
191GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.39E-02
192GO:0009738: abscisic acid-activated signaling pathway3.46E-02
193GO:0009624: response to nematode3.47E-02
194GO:0010118: stomatal movement3.54E-02
195GO:0042391: regulation of membrane potential3.54E-02
196GO:0010087: phloem or xylem histogenesis3.54E-02
197GO:0018105: peptidyl-serine phosphorylation3.57E-02
198GO:0046323: glucose import3.73E-02
199GO:0042752: regulation of circadian rhythm3.93E-02
200GO:0061025: membrane fusion3.93E-02
201GO:0006814: sodium ion transport3.93E-02
202GO:0045454: cell redox homeostasis4.06E-02
203GO:0006623: protein targeting to vacuole4.13E-02
204GO:0048825: cotyledon development4.13E-02
205GO:0009749: response to glucose4.13E-02
206GO:0071554: cell wall organization or biogenesis4.33E-02
207GO:0006891: intra-Golgi vesicle-mediated transport4.33E-02
208GO:0010193: response to ozone4.33E-02
209GO:0010583: response to cyclopentenone4.54E-02
210GO:0016032: viral process4.54E-02
211GO:0006869: lipid transport4.54E-02
212GO:0009058: biosynthetic process4.56E-02
213GO:0009733: response to auxin4.67E-02
214GO:0009567: double fertilization forming a zygote and endosperm4.96E-02
RankGO TermAdjusted P value
1GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
2GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
3GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
4GO:0015576: sorbitol transmembrane transporter activity0.00E+00
5GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
6GO:0015591: D-ribose transmembrane transporter activity0.00E+00
7GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
8GO:0015148: D-xylose transmembrane transporter activity0.00E+00
9GO:0015575: mannitol transmembrane transporter activity0.00E+00
10GO:0008777: acetylornithine deacetylase activity0.00E+00
11GO:0005092: GDP-dissociation inhibitor activity0.00E+00
12GO:0004674: protein serine/threonine kinase activity1.24E-09
13GO:0016301: kinase activity3.77E-09
14GO:0005524: ATP binding6.13E-07
15GO:0009055: electron carrier activity1.09E-05
16GO:0005093: Rab GDP-dissociation inhibitor activity2.76E-05
17GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.89E-05
18GO:0010279: indole-3-acetic acid amido synthetase activity1.05E-04
19GO:0005496: steroid binding1.63E-04
20GO:0036402: proteasome-activating ATPase activity2.32E-04
21GO:0004747: ribokinase activity3.12E-04
22GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity4.23E-04
23GO:0033984: indole-3-glycerol-phosphate lyase activity4.23E-04
24GO:0008909: isochorismate synthase activity4.23E-04
25GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity4.23E-04
26GO:0015168: glycerol transmembrane transporter activity4.23E-04
27GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity4.23E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity4.23E-04
29GO:0050660: flavin adenine dinucleotide binding4.59E-04
30GO:0008865: fructokinase activity5.03E-04
31GO:0008142: oxysterol binding6.14E-04
32GO:0005516: calmodulin binding8.23E-04
33GO:0004743: pyruvate kinase activity8.68E-04
34GO:0030955: potassium ion binding8.68E-04
35GO:0016844: strictosidine synthase activity8.68E-04
36GO:0045140: inositol phosphoceramide synthase activity9.16E-04
37GO:0032934: sterol binding9.16E-04
38GO:0004061: arylformamidase activity9.16E-04
39GO:0015036: disulfide oxidoreductase activity9.16E-04
40GO:0042937: tripeptide transporter activity9.16E-04
41GO:0004566: beta-glucuronidase activity9.16E-04
42GO:0005509: calcium ion binding1.38E-03
43GO:0015035: protein disulfide oxidoreductase activity1.44E-03
44GO:0004683: calmodulin-dependent protein kinase activity1.45E-03
45GO:0008430: selenium binding1.49E-03
46GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.49E-03
47GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.49E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.49E-03
49GO:0050833: pyruvate transmembrane transporter activity1.49E-03
50GO:0004383: guanylate cyclase activity1.49E-03
51GO:0016805: dipeptidase activity1.49E-03
52GO:0016595: glutamate binding1.49E-03
53GO:0004022: alcohol dehydrogenase (NAD) activity1.51E-03
54GO:0017025: TBP-class protein binding1.91E-03
55GO:0004970: ionotropic glutamate receptor activity1.91E-03
56GO:0005217: intracellular ligand-gated ion channel activity1.91E-03
57GO:0005354: galactose transmembrane transporter activity2.15E-03
58GO:0042299: lupeol synthase activity2.15E-03
59GO:0004834: tryptophan synthase activity2.89E-03
60GO:0042936: dipeptide transporter activity2.89E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.89E-03
62GO:0015369: calcium:proton antiporter activity2.89E-03
63GO:0004031: aldehyde oxidase activity2.89E-03
64GO:0050302: indole-3-acetaldehyde oxidase activity2.89E-03
65GO:0016866: intramolecular transferase activity2.89E-03
66GO:0016279: protein-lysine N-methyltransferase activity2.89E-03
67GO:0015368: calcium:cation antiporter activity2.89E-03
68GO:0016491: oxidoreductase activity3.23E-03
69GO:0005459: UDP-galactose transmembrane transporter activity3.71E-03
70GO:0015145: monosaccharide transmembrane transporter activity3.71E-03
71GO:0017137: Rab GTPase binding3.71E-03
72GO:0004040: amidase activity3.71E-03
73GO:0004356: glutamate-ammonia ligase activity3.71E-03
74GO:0047714: galactolipase activity4.59E-03
75GO:0010181: FMN binding5.05E-03
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.53E-03
77GO:0102391: decanoate--CoA ligase activity5.53E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity5.53E-03
79GO:0030246: carbohydrate binding6.43E-03
80GO:0008506: sucrose:proton symporter activity6.54E-03
81GO:0008235: metalloexopeptidase activity6.54E-03
82GO:0004467: long-chain fatty acid-CoA ligase activity6.54E-03
83GO:0008483: transaminase activity7.48E-03
84GO:0004034: aldose 1-epimerase activity7.60E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity7.60E-03
86GO:0015491: cation:cation antiporter activity7.60E-03
87GO:0004033: aldo-keto reductase (NADP) activity7.60E-03
88GO:0008970: phosphatidylcholine 1-acylhydrolase activity8.73E-03
89GO:0009931: calcium-dependent protein serine/threonine kinase activity9.40E-03
90GO:0071949: FAD binding9.92E-03
91GO:0030247: polysaccharide binding9.92E-03
92GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.04E-02
93GO:0005096: GTPase activator activity1.16E-02
94GO:0004222: metalloendopeptidase activity1.21E-02
95GO:0004568: chitinase activity1.24E-02
96GO:0008171: O-methyltransferase activity1.24E-02
97GO:0004713: protein tyrosine kinase activity1.24E-02
98GO:0030145: manganese ion binding1.27E-02
99GO:0047372: acylglycerol lipase activity1.38E-02
100GO:0005543: phospholipid binding1.38E-02
101GO:0008794: arsenate reductase (glutaredoxin) activity1.38E-02
102GO:0004177: aminopeptidase activity1.38E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.38E-02
104GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.40E-02
105GO:0045551: cinnamyl-alcohol dehydrogenase activity1.52E-02
106GO:0000149: SNARE binding1.53E-02
107GO:0019888: protein phosphatase regulator activity1.66E-02
108GO:0005388: calcium-transporting ATPase activity1.66E-02
109GO:0004364: glutathione transferase activity1.73E-02
110GO:0004175: endopeptidase activity1.81E-02
111GO:0005484: SNAP receptor activity1.81E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding1.95E-02
113GO:0030552: cAMP binding1.96E-02
114GO:0030553: cGMP binding1.96E-02
115GO:0008061: chitin binding1.96E-02
116GO:0004725: protein tyrosine phosphatase activity2.12E-02
117GO:0051536: iron-sulfur cluster binding2.29E-02
118GO:0031418: L-ascorbic acid binding2.29E-02
119GO:0008168: methyltransferase activity2.37E-02
120GO:0005216: ion channel activity2.45E-02
121GO:0043424: protein histidine kinase binding2.45E-02
122GO:0004298: threonine-type endopeptidase activity2.62E-02
123GO:0031625: ubiquitin protein ligase binding2.70E-02
124GO:0061630: ubiquitin protein ligase activity3.46E-02
125GO:0005249: voltage-gated potassium channel activity3.54E-02
126GO:0030551: cyclic nucleotide binding3.54E-02
127GO:0005506: iron ion binding3.77E-02
128GO:0016853: isomerase activity3.93E-02
129GO:0005355: glucose transmembrane transporter activity3.93E-02
130GO:0004872: receptor activity4.13E-02
131GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.46E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.65E-10
2GO:0016021: integral component of membrane3.85E-10
3GO:0005783: endoplasmic reticulum1.05E-05
4GO:0005829: cytosol3.56E-05
5GO:0005789: endoplasmic reticulum membrane4.89E-05
6GO:0031597: cytosolic proteasome complex3.12E-04
7GO:0031595: nuclear proteasome complex4.03E-04
8GO:0000502: proteasome complex8.11E-04
9GO:0008540: proteasome regulatory particle, base subcomplex8.68E-04
10GO:0031314: extrinsic component of mitochondrial inner membrane9.16E-04
11GO:0005778: peroxisomal membrane1.02E-03
12GO:0005773: vacuole1.48E-03
13GO:0030176: integral component of endoplasmic reticulum membrane1.91E-03
14GO:0000325: plant-type vacuole1.99E-03
15GO:0005968: Rab-protein geranylgeranyltransferase complex2.15E-03
16GO:0070062: extracellular exosome2.15E-03
17GO:0031461: cullin-RING ubiquitin ligase complex2.15E-03
18GO:0005741: mitochondrial outer membrane2.86E-03
19GO:0005746: mitochondrial respiratory chain3.71E-03
20GO:0030140: trans-Golgi network transport vesicle4.59E-03
21GO:0030173: integral component of Golgi membrane5.53E-03
22GO:0000794: condensed nuclear chromosome6.54E-03
23GO:0012507: ER to Golgi transport vesicle membrane7.60E-03
24GO:0031305: integral component of mitochondrial inner membrane7.60E-03
25GO:0016020: membrane1.17E-02
26GO:0005765: lysosomal membrane1.38E-02
27GO:0031201: SNARE complex1.66E-02
28GO:0031902: late endosome membrane1.66E-02
29GO:0005794: Golgi apparatus1.89E-02
30GO:0005839: proteasome core complex2.62E-02
31GO:0005774: vacuolar membrane2.98E-02
32GO:0012505: endomembrane system3.37E-02
33GO:0005770: late endosome3.73E-02
34GO:0005777: peroxisome4.43E-02
35GO:0000145: exocyst4.54E-02
36GO:0009524: phragmoplast4.56E-02
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Gene type



Gene DE type