Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0015739: sialic acid transport0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I1.05E-06
11GO:0009658: chloroplast organization2.02E-06
12GO:0010207: photosystem II assembly2.63E-06
13GO:0032544: plastid translation1.49E-05
14GO:0016117: carotenoid biosynthetic process1.80E-05
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.96E-05
16GO:0006546: glycine catabolic process7.06E-05
17GO:0016123: xanthophyll biosynthetic process1.11E-04
18GO:0006418: tRNA aminoacylation for protein translation1.60E-04
19GO:0010190: cytochrome b6f complex assembly1.60E-04
20GO:0006810: transport1.74E-04
21GO:0061077: chaperone-mediated protein folding1.83E-04
22GO:0009955: adaxial/abaxial pattern specification2.18E-04
23GO:0042026: protein refolding2.18E-04
24GO:0009443: pyridoxal 5'-phosphate salvage3.34E-04
25GO:0006438: valyl-tRNA aminoacylation3.34E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.34E-04
27GO:0071277: cellular response to calcium ion3.34E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.34E-04
29GO:0043087: regulation of GTPase activity3.34E-04
30GO:0006436: tryptophanyl-tRNA aminoacylation3.34E-04
31GO:1902458: positive regulation of stomatal opening3.34E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway3.34E-04
33GO:0060627: regulation of vesicle-mediated transport3.34E-04
34GO:1900865: chloroplast RNA modification6.19E-04
35GO:1902326: positive regulation of chlorophyll biosynthetic process7.29E-04
36GO:0034755: iron ion transmembrane transport7.29E-04
37GO:0097054: L-glutamate biosynthetic process7.29E-04
38GO:0080183: response to photooxidative stress7.29E-04
39GO:1903426: regulation of reactive oxygen species biosynthetic process7.29E-04
40GO:0030388: fructose 1,6-bisphosphate metabolic process7.29E-04
41GO:2000123: positive regulation of stomatal complex development7.29E-04
42GO:0018119: peptidyl-cysteine S-nitrosylation8.32E-04
43GO:0045037: protein import into chloroplast stroma9.49E-04
44GO:0018298: protein-chromophore linkage1.06E-03
45GO:0031022: nuclear migration along microfilament1.18E-03
46GO:0001887: selenium compound metabolic process1.18E-03
47GO:0006000: fructose metabolic process1.18E-03
48GO:0006696: ergosterol biosynthetic process1.18E-03
49GO:2001295: malonyl-CoA biosynthetic process1.18E-03
50GO:0090506: axillary shoot meristem initiation1.18E-03
51GO:0000913: preprophase band assembly1.18E-03
52GO:0010020: chloroplast fission1.21E-03
53GO:0055114: oxidation-reduction process1.33E-03
54GO:0009853: photorespiration1.43E-03
55GO:0015979: photosynthesis1.46E-03
56GO:0006636: unsaturated fatty acid biosynthetic process1.50E-03
57GO:0006633: fatty acid biosynthetic process1.61E-03
58GO:0006537: glutamate biosynthetic process1.70E-03
59GO:0010731: protein glutathionylation1.70E-03
60GO:0006424: glutamyl-tRNA aminoacylation1.70E-03
61GO:0009855: determination of bilateral symmetry1.70E-03
62GO:0016556: mRNA modification1.70E-03
63GO:0043572: plastid fission1.70E-03
64GO:0007231: osmosensory signaling pathway1.70E-03
65GO:0051085: chaperone mediated protein folding requiring cofactor1.70E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system2.28E-03
67GO:0009765: photosynthesis, light harvesting2.28E-03
68GO:2000122: negative regulation of stomatal complex development2.28E-03
69GO:0045727: positive regulation of translation2.28E-03
70GO:0033500: carbohydrate homeostasis2.28E-03
71GO:2000038: regulation of stomatal complex development2.28E-03
72GO:0008295: spermidine biosynthetic process2.28E-03
73GO:0010037: response to carbon dioxide2.28E-03
74GO:0006808: regulation of nitrogen utilization2.28E-03
75GO:0019676: ammonia assimilation cycle2.28E-03
76GO:0015976: carbon utilization2.28E-03
77GO:0010375: stomatal complex patterning2.91E-03
78GO:0032543: mitochondrial translation2.91E-03
79GO:0016120: carotene biosynthetic process2.91E-03
80GO:0006564: L-serine biosynthetic process2.91E-03
81GO:0006656: phosphatidylcholine biosynthetic process2.91E-03
82GO:0009904: chloroplast accumulation movement2.91E-03
83GO:0010236: plastoquinone biosynthetic process2.91E-03
84GO:0045038: protein import into chloroplast thylakoid membrane2.91E-03
85GO:0031365: N-terminal protein amino acid modification2.91E-03
86GO:0016554: cytidine to uridine editing3.60E-03
87GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.60E-03
88GO:0032973: amino acid export3.60E-03
89GO:0018258: protein O-linked glycosylation via hydroxyproline3.60E-03
90GO:0010405: arabinogalactan protein metabolic process3.60E-03
91GO:0042549: photosystem II stabilization3.60E-03
92GO:0010014: meristem initiation4.33E-03
93GO:0042372: phylloquinone biosynthetic process4.33E-03
94GO:0080060: integument development4.33E-03
95GO:0010067: procambium histogenesis4.33E-03
96GO:0006458: 'de novo' protein folding4.33E-03
97GO:1901259: chloroplast rRNA processing4.33E-03
98GO:0009903: chloroplast avoidance movement4.33E-03
99GO:0010189: vitamin E biosynthetic process4.33E-03
100GO:0009854: oxidative photosynthetic carbon pathway4.33E-03
101GO:0010019: chloroplast-nucleus signaling pathway4.33E-03
102GO:0007264: small GTPase mediated signal transduction4.35E-03
103GO:0010090: trichome morphogenesis4.64E-03
104GO:0006400: tRNA modification5.11E-03
105GO:0043090: amino acid import5.11E-03
106GO:0048564: photosystem I assembly5.94E-03
107GO:0009704: de-etiolation5.94E-03
108GO:2000070: regulation of response to water deprivation5.94E-03
109GO:0045010: actin nucleation5.94E-03
110GO:0006412: translation6.34E-03
111GO:0015996: chlorophyll catabolic process6.81E-03
112GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.81E-03
113GO:0007186: G-protein coupled receptor signaling pathway6.81E-03
114GO:0017004: cytochrome complex assembly6.81E-03
115GO:0006002: fructose 6-phosphate metabolic process6.81E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis7.73E-03
117GO:0010206: photosystem II repair7.73E-03
118GO:0080144: amino acid homeostasis7.73E-03
119GO:0090333: regulation of stomatal closure7.73E-03
120GO:0000902: cell morphogenesis7.73E-03
121GO:0015780: nucleotide-sugar transport7.73E-03
122GO:0000160: phosphorelay signal transduction system8.09E-03
123GO:0010205: photoinhibition8.68E-03
124GO:0009086: methionine biosynthetic process8.68E-03
125GO:0019538: protein metabolic process9.69E-03
126GO:0034599: cellular response to oxidative stress1.02E-02
127GO:0019684: photosynthesis, light reaction1.07E-02
128GO:0006816: calcium ion transport1.07E-02
129GO:0010072: primary shoot apical meristem specification1.07E-02
130GO:0009089: lysine biosynthetic process via diaminopimelate1.07E-02
131GO:0043085: positive regulation of catalytic activity1.07E-02
132GO:0006879: cellular iron ion homeostasis1.07E-02
133GO:0000272: polysaccharide catabolic process1.07E-02
134GO:0009744: response to sucrose1.26E-02
135GO:0030036: actin cytoskeleton organization1.29E-02
136GO:0009725: response to hormone1.29E-02
137GO:0006094: gluconeogenesis1.29E-02
138GO:0009767: photosynthetic electron transport chain1.29E-02
139GO:0005986: sucrose biosynthetic process1.29E-02
140GO:0010143: cutin biosynthetic process1.41E-02
141GO:0019253: reductive pentose-phosphate cycle1.41E-02
142GO:0010223: secondary shoot formation1.41E-02
143GO:0009636: response to toxic substance1.42E-02
144GO:0090351: seedling development1.53E-02
145GO:0070588: calcium ion transmembrane transport1.53E-02
146GO:0042538: hyperosmotic salinity response1.59E-02
147GO:0042254: ribosome biogenesis1.63E-02
148GO:0010025: wax biosynthetic process1.65E-02
149GO:0009736: cytokinin-activated signaling pathway1.71E-02
150GO:0006813: potassium ion transport1.71E-02
151GO:0009944: polarity specification of adaxial/abaxial axis1.77E-02
152GO:0009735: response to cytokinin1.89E-02
153GO:0031408: oxylipin biosynthetic process2.03E-02
154GO:0006730: one-carbon metabolic process2.17E-02
155GO:0007005: mitochondrion organization2.17E-02
156GO:0080092: regulation of pollen tube growth2.17E-02
157GO:0009294: DNA mediated transformation2.31E-02
158GO:0001944: vasculature development2.31E-02
159GO:0010089: xylem development2.45E-02
160GO:0045454: cell redox homeostasis2.61E-02
161GO:0042631: cellular response to water deprivation2.74E-02
162GO:0010087: phloem or xylem histogenesis2.74E-02
163GO:0008360: regulation of cell shape2.89E-02
164GO:0006662: glycerol ether metabolic process2.89E-02
165GO:0010182: sugar mediated signaling pathway2.89E-02
166GO:0007018: microtubule-based movement3.05E-02
167GO:0055085: transmembrane transport3.06E-02
168GO:0006457: protein folding3.15E-02
169GO:0009791: post-embryonic development3.20E-02
170GO:0019252: starch biosynthetic process3.20E-02
171GO:0032259: methylation3.21E-02
172GO:0080156: mitochondrial mRNA modification3.36E-02
173GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.36E-02
174GO:0000302: response to reactive oxygen species3.36E-02
175GO:0016032: viral process3.52E-02
176GO:0009793: embryo development ending in seed dormancy3.52E-02
177GO:1901657: glycosyl compound metabolic process3.69E-02
178GO:0006413: translational initiation3.91E-02
179GO:0010286: heat acclimation4.02E-02
180GO:0071805: potassium ion transmembrane transport4.02E-02
181GO:0007267: cell-cell signaling4.02E-02
182GO:0000910: cytokinesis4.19E-02
183GO:0007623: circadian rhythm4.19E-02
184GO:0010027: thylakoid membrane organization4.37E-02
185GO:0046686: response to cadmium ion4.45E-02
186GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.54E-02
187GO:0009627: systemic acquired resistance4.72E-02
188GO:0042128: nitrate assimilation4.72E-02
189GO:0015995: chlorophyll biosynthetic process4.90E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0015136: sialic acid transmembrane transporter activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:1990534: thermospermine oxidase activity0.00E+00
16GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
17GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
18GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
19GO:0019843: rRNA binding1.75E-06
20GO:0004148: dihydrolipoyl dehydrogenase activity1.79E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.06E-05
22GO:0004812: aminoacyl-tRNA ligase activity2.95E-04
23GO:0004560: alpha-L-fucosidase activity3.34E-04
24GO:0003867: 4-aminobutyrate transaminase activity3.34E-04
25GO:0005080: protein kinase C binding3.34E-04
26GO:0051996: squalene synthase activity3.34E-04
27GO:0004832: valine-tRNA ligase activity3.34E-04
28GO:0031957: very long-chain fatty acid-CoA ligase activity3.34E-04
29GO:0004830: tryptophan-tRNA ligase activity3.34E-04
30GO:0016041: glutamate synthase (ferredoxin) activity3.34E-04
31GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.34E-04
32GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.34E-04
33GO:0004033: aldo-keto reductase (NADP) activity3.55E-04
34GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.77E-04
35GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.36E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.29E-04
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.29E-04
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.29E-04
39GO:0000234: phosphoethanolamine N-methyltransferase activity7.29E-04
40GO:0008967: phosphoglycolate phosphatase activity7.29E-04
41GO:0010291: carotene beta-ring hydroxylase activity7.29E-04
42GO:0042389: omega-3 fatty acid desaturase activity7.29E-04
43GO:0010297: heteropolysaccharide binding7.29E-04
44GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.29E-04
45GO:0004617: phosphoglycerate dehydrogenase activity7.29E-04
46GO:0004047: aminomethyltransferase activity7.29E-04
47GO:0004766: spermidine synthase activity7.29E-04
48GO:0044183: protein binding involved in protein folding8.32E-04
49GO:0017150: tRNA dihydrouridine synthase activity1.18E-03
50GO:0003962: cystathionine gamma-synthase activity1.18E-03
51GO:0003913: DNA photolyase activity1.18E-03
52GO:0004075: biotin carboxylase activity1.18E-03
53GO:0030267: glyoxylate reductase (NADP) activity1.18E-03
54GO:0070402: NADPH binding1.18E-03
55GO:0005528: FK506 binding1.66E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity1.70E-03
57GO:0004176: ATP-dependent peptidase activity2.02E-03
58GO:0043495: protein anchor2.28E-03
59GO:0003924: GTPase activity2.31E-03
60GO:0022891: substrate-specific transmembrane transporter activity2.41E-03
61GO:0004040: amidase activity2.91E-03
62GO:0051538: 3 iron, 4 sulfur cluster binding2.91E-03
63GO:0003989: acetyl-CoA carboxylase activity2.91E-03
64GO:0016208: AMP binding3.60E-03
65GO:0004130: cytochrome-c peroxidase activity3.60E-03
66GO:0016688: L-ascorbate peroxidase activity3.60E-03
67GO:0042578: phosphoric ester hydrolase activity3.60E-03
68GO:0080030: methyl indole-3-acetate esterase activity3.60E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity3.60E-03
70GO:0003735: structural constituent of ribosome3.68E-03
71GO:0048038: quinone binding4.08E-03
72GO:0051753: mannan synthase activity4.33E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.33E-03
74GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.33E-03
75GO:0102391: decanoate--CoA ligase activity4.33E-03
76GO:0051920: peroxiredoxin activity4.33E-03
77GO:0051082: unfolded protein binding4.53E-03
78GO:0000156: phosphorelay response regulator activity4.64E-03
79GO:0005338: nucleotide-sugar transmembrane transporter activity5.11E-03
80GO:0008235: metalloexopeptidase activity5.11E-03
81GO:0009881: photoreceptor activity5.11E-03
82GO:0019899: enzyme binding5.11E-03
83GO:0004467: long-chain fatty acid-CoA ligase activity5.11E-03
84GO:0008237: metallopeptidase activity5.25E-03
85GO:0016209: antioxidant activity5.94E-03
86GO:0016168: chlorophyll binding6.23E-03
87GO:0008135: translation factor activity, RNA binding6.81E-03
88GO:0003843: 1,3-beta-D-glucan synthase activity6.81E-03
89GO:0004222: metalloendopeptidase activity8.49E-03
90GO:0005381: iron ion transmembrane transporter activity8.68E-03
91GO:0008047: enzyme activator activity9.69E-03
92GO:0003746: translation elongation factor activity9.77E-03
93GO:0004519: endonuclease activity1.03E-02
94GO:0005089: Rho guanyl-nucleotide exchange factor activity1.07E-02
95GO:0004177: aminopeptidase activity1.07E-02
96GO:0004364: glutathione transferase activity1.21E-02
97GO:0042802: identical protein binding1.24E-02
98GO:0004089: carbonate dehydratase activity1.29E-02
99GO:0031072: heat shock protein binding1.29E-02
100GO:0005262: calcium channel activity1.29E-02
101GO:0051537: 2 iron, 2 sulfur cluster binding1.37E-02
102GO:0008131: primary amine oxidase activity1.41E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.41E-02
104GO:0005525: GTP binding1.50E-02
105GO:0008146: sulfotransferase activity1.53E-02
106GO:0043424: protein histidine kinase binding1.90E-02
107GO:0015079: potassium ion transmembrane transporter activity1.90E-02
108GO:0008324: cation transmembrane transporter activity1.90E-02
109GO:0033612: receptor serine/threonine kinase binding2.03E-02
110GO:0005102: receptor binding2.60E-02
111GO:0047134: protein-disulfide reductase activity2.60E-02
112GO:0050662: coenzyme binding3.05E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.05E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.13E-02
115GO:0004872: receptor activity3.20E-02
116GO:0019901: protein kinase binding3.20E-02
117GO:0005515: protein binding3.35E-02
118GO:0004518: nuclease activity3.52E-02
119GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.69E-02
120GO:0016759: cellulose synthase activity3.85E-02
121GO:0008483: transaminase activity4.02E-02
122GO:0016597: amino acid binding4.19E-02
123GO:0003743: translation initiation factor activity4.89E-02
124GO:0102483: scopolin beta-glucosidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast6.45E-65
4GO:0009941: chloroplast envelope2.31E-33
5GO:0009535: chloroplast thylakoid membrane2.00E-29
6GO:0009570: chloroplast stroma3.88E-27
7GO:0009579: thylakoid1.25E-15
8GO:0009534: chloroplast thylakoid4.47E-12
9GO:0009543: chloroplast thylakoid lumen2.35E-10
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.17E-09
11GO:0031969: chloroplast membrane4.50E-06
12GO:0009654: photosystem II oxygen evolving complex6.97E-06
13GO:0048046: apoplast1.07E-04
14GO:0009706: chloroplast inner membrane1.23E-04
15GO:0042651: thylakoid membrane1.60E-04
16GO:0009532: plastid stroma1.83E-04
17GO:0005840: ribosome2.32E-04
18GO:0031977: thylakoid lumen2.57E-04
19GO:0009344: nitrite reductase complex [NAD(P)H]3.34E-04
20GO:0009523: photosystem II4.37E-04
21GO:0019898: extrinsic component of membrane4.37E-04
22GO:0010319: stromule6.60E-04
23GO:0042170: plastid membrane7.29E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex7.29E-04
25GO:0009528: plastid inner membrane1.18E-03
26GO:0030095: chloroplast photosystem II1.21E-03
27GO:0015934: large ribosomal subunit1.28E-03
28GO:0005759: mitochondrial matrix1.61E-03
29GO:0005960: glycine cleavage complex1.70E-03
30GO:0009527: plastid outer membrane2.28E-03
31GO:0009536: plastid3.56E-03
32GO:0031209: SCAR complex3.60E-03
33GO:0010287: plastoglobule5.63E-03
34GO:0009539: photosystem II reaction center6.81E-03
35GO:0000148: 1,3-beta-D-glucan synthase complex6.81E-03
36GO:0005763: mitochondrial small ribosomal subunit7.73E-03
37GO:0016324: apical plasma membrane9.69E-03
38GO:0005819: spindle1.07E-02
39GO:0000311: plastid large ribosomal subunit1.18E-02
40GO:0009574: preprophase band1.29E-02
41GO:0016021: integral component of membrane1.96E-02
42GO:0005871: kinesin complex2.60E-02
43GO:0005623: cell3.13E-02
44GO:0009504: cell plate3.20E-02
45GO:0009524: phragmoplast3.21E-02
46GO:0005694: chromosome3.52E-02
47GO:0005778: peroxisomal membrane4.02E-02
48GO:0005615: extracellular space4.68E-02
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Gene type



Gene DE type