Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28025

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
11GO:0032544: plastid translation1.12E-15
12GO:0009773: photosynthetic electron transport in photosystem I5.60E-14
13GO:0015979: photosynthesis3.32E-10
14GO:0030388: fructose 1,6-bisphosphate metabolic process9.64E-06
15GO:1902326: positive regulation of chlorophyll biosynthetic process9.64E-06
16GO:0006412: translation1.60E-05
17GO:0006633: fatty acid biosynthetic process1.89E-05
18GO:0018298: protein-chromophore linkage2.88E-05
19GO:0006000: fructose metabolic process3.30E-05
20GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.10E-05
21GO:0006810: transport7.72E-05
22GO:0009735: response to cytokinin8.12E-05
23GO:0009658: chloroplast organization8.92E-05
24GO:0042254: ribosome biogenesis9.39E-05
25GO:0009765: photosynthesis, light harvesting1.24E-04
26GO:0045727: positive regulation of translation1.24E-04
27GO:0006546: glycine catabolic process1.24E-04
28GO:0006094: gluconeogenesis1.45E-04
29GO:0010207: photosystem II assembly1.74E-04
30GO:0019253: reductive pentose-phosphate cycle1.74E-04
31GO:0010027: thylakoid membrane organization1.88E-04
32GO:0016120: carotene biosynthetic process1.90E-04
33GO:0006636: unsaturated fatty acid biosynthetic process2.39E-04
34GO:0042549: photosystem II stabilization2.70E-04
35GO:0010190: cytochrome b6f complex assembly2.70E-04
36GO:0042371: vitamin K biosynthetic process4.67E-04
37GO:1902458: positive regulation of stomatal opening4.67E-04
38GO:0034337: RNA folding4.67E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway4.67E-04
40GO:0051180: vitamin transport4.67E-04
41GO:0009443: pyridoxal 5'-phosphate salvage4.67E-04
42GO:0030974: thiamine pyrophosphate transport4.67E-04
43GO:0071277: cellular response to calcium ion4.67E-04
44GO:0000481: maturation of 5S rRNA4.67E-04
45GO:0016117: carotenoid biosynthetic process5.64E-04
46GO:0042335: cuticle development6.22E-04
47GO:0006002: fructose 6-phosphate metabolic process7.08E-04
48GO:0010205: photoinhibition9.98E-04
49GO:1900865: chloroplast RNA modification9.98E-04
50GO:0097054: L-glutamate biosynthetic process1.01E-03
51GO:0006729: tetrahydrobiopterin biosynthetic process1.01E-03
52GO:1903426: regulation of reactive oxygen species biosynthetic process1.01E-03
53GO:0080005: photosystem stoichiometry adjustment1.01E-03
54GO:0006364: rRNA processing1.01E-03
55GO:0015893: drug transport1.01E-03
56GO:0034755: iron ion transmembrane transport1.01E-03
57GO:0009662: etioplast organization1.01E-03
58GO:0000038: very long-chain fatty acid metabolic process1.34E-03
59GO:0009416: response to light stimulus1.47E-03
60GO:2001295: malonyl-CoA biosynthetic process1.64E-03
61GO:0006954: inflammatory response1.64E-03
62GO:0006518: peptide metabolic process1.64E-03
63GO:0071492: cellular response to UV-A1.64E-03
64GO:0009767: photosynthetic electron transport chain1.74E-03
65GO:0005986: sucrose biosynthetic process1.74E-03
66GO:0006006: glucose metabolic process1.74E-03
67GO:0055114: oxidation-reduction process1.94E-03
68GO:0055070: copper ion homeostasis2.38E-03
69GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.38E-03
70GO:0046836: glycolipid transport2.38E-03
71GO:0006537: glutamate biosynthetic process2.38E-03
72GO:0009800: cinnamic acid biosynthetic process2.38E-03
73GO:0010731: protein glutathionylation2.38E-03
74GO:0006424: glutamyl-tRNA aminoacylation2.38E-03
75GO:0009853: photorespiration2.70E-03
76GO:0009768: photosynthesis, light harvesting in photosystem I3.01E-03
77GO:0010037: response to carbon dioxide3.20E-03
78GO:0006808: regulation of nitrogen utilization3.20E-03
79GO:0019676: ammonia assimilation cycle3.20E-03
80GO:0015976: carbon utilization3.20E-03
81GO:0071486: cellular response to high light intensity3.20E-03
82GO:0019464: glycine decarboxylation via glycine cleavage system3.20E-03
83GO:2000122: negative regulation of stomatal complex development3.20E-03
84GO:0061077: chaperone-mediated protein folding3.31E-03
85GO:0031365: N-terminal protein amino acid modification4.10E-03
86GO:0035434: copper ion transmembrane transport4.10E-03
87GO:0006461: protein complex assembly4.10E-03
88GO:0016123: xanthophyll biosynthetic process4.10E-03
89GO:0032543: mitochondrial translation4.10E-03
90GO:0006564: L-serine biosynthetic process4.10E-03
91GO:0010236: plastoquinone biosynthetic process4.10E-03
92GO:0045038: protein import into chloroplast thylakoid membrane4.10E-03
93GO:0009644: response to high light intensity4.14E-03
94GO:0009306: protein secretion4.31E-03
95GO:0009409: response to cold4.91E-03
96GO:0010405: arabinogalactan protein metabolic process5.08E-03
97GO:0009913: epidermal cell differentiation5.08E-03
98GO:0016554: cytidine to uridine editing5.08E-03
99GO:0006559: L-phenylalanine catabolic process5.08E-03
100GO:0032973: amino acid export5.08E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline5.08E-03
102GO:0000741: karyogamy5.08E-03
103GO:0009854: oxidative photosynthetic carbon pathway6.13E-03
104GO:0010019: chloroplast-nucleus signaling pathway6.13E-03
105GO:0009955: adaxial/abaxial pattern specification6.13E-03
106GO:0042372: phylloquinone biosynthetic process6.13E-03
107GO:1901259: chloroplast rRNA processing6.13E-03
108GO:0030488: tRNA methylation6.13E-03
109GO:0010189: vitamin E biosynthetic process6.13E-03
110GO:0006401: RNA catabolic process7.25E-03
111GO:0043090: amino acid import7.25E-03
112GO:0030497: fatty acid elongation7.25E-03
113GO:0010196: nonphotochemical quenching7.25E-03
114GO:0009645: response to low light intensity stimulus7.25E-03
115GO:0006400: tRNA modification7.25E-03
116GO:0045010: actin nucleation8.44E-03
117GO:0009231: riboflavin biosynthetic process8.44E-03
118GO:0008610: lipid biosynthetic process8.44E-03
119GO:0006605: protein targeting8.44E-03
120GO:0009704: de-etiolation8.44E-03
121GO:0032508: DNA duplex unwinding8.44E-03
122GO:2000070: regulation of response to water deprivation8.44E-03
123GO:0017004: cytochrome complex assembly9.69E-03
124GO:0009699: phenylpropanoid biosynthetic process9.69E-03
125GO:0015996: chlorophyll catabolic process9.69E-03
126GO:0007186: G-protein coupled receptor signaling pathway9.69E-03
127GO:0009657: plastid organization9.69E-03
128GO:0042128: nitrate assimilation1.09E-02
129GO:0000902: cell morphogenesis1.10E-02
130GO:0009051: pentose-phosphate shunt, oxidative branch1.10E-02
131GO:0090305: nucleic acid phosphodiester bond hydrolysis1.10E-02
132GO:0010206: photosystem II repair1.10E-02
133GO:0006098: pentose-phosphate shunt1.10E-02
134GO:0080144: amino acid homeostasis1.10E-02
135GO:0090333: regulation of stomatal closure1.10E-02
136GO:0009638: phototropism1.24E-02
137GO:0009817: defense response to fungus, incompatible interaction1.28E-02
138GO:0043069: negative regulation of programmed cell death1.38E-02
139GO:0009870: defense response signaling pathway, resistance gene-dependent1.38E-02
140GO:0019684: photosynthesis, light reaction1.53E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.53E-02
142GO:0043085: positive regulation of catalytic activity1.53E-02
143GO:0006879: cellular iron ion homeostasis1.53E-02
144GO:0006415: translational termination1.53E-02
145GO:0000272: polysaccharide catabolic process1.53E-02
146GO:0018119: peptidyl-cysteine S-nitrosylation1.53E-02
147GO:0045037: protein import into chloroplast stroma1.69E-02
148GO:0034599: cellular response to oxidative stress1.70E-02
149GO:0030036: actin cytoskeleton organization1.85E-02
150GO:0009725: response to hormone1.85E-02
151GO:0010628: positive regulation of gene expression1.85E-02
152GO:0009744: response to sucrose2.10E-02
153GO:0005985: sucrose metabolic process2.19E-02
154GO:0090351: seedling development2.19E-02
155GO:0010025: wax biosynthetic process2.36E-02
156GO:0009636: response to toxic substance2.36E-02
157GO:0005992: trehalose biosynthetic process2.54E-02
158GO:0000027: ribosomal large subunit assembly2.54E-02
159GO:0031408: oxylipin biosynthetic process2.92E-02
160GO:0080092: regulation of pollen tube growth3.11E-02
161GO:0006730: one-carbon metabolic process3.11E-02
162GO:0006096: glycolytic process3.35E-02
163GO:0006817: phosphate ion transport3.51E-02
164GO:0000413: protein peptidyl-prolyl isomerization3.93E-02
165GO:0042631: cellular response to water deprivation3.93E-02
166GO:0010197: polar nucleus fusion4.15E-02
167GO:0010182: sugar mediated signaling pathway4.15E-02
168GO:0006520: cellular amino acid metabolic process4.15E-02
169GO:0006662: glycerol ether metabolic process4.15E-02
170GO:0015986: ATP synthesis coupled proton transport4.37E-02
171GO:0019252: starch biosynthetic process4.59E-02
172GO:0009611: response to wounding4.64E-02
173GO:0016132: brassinosteroid biosynthetic process4.81E-02
174GO:0080156: mitochondrial mRNA modification4.81E-02
175GO:0000302: response to reactive oxygen species4.81E-02
176GO:0045454: cell redox homeostasis4.86E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0046608: carotenoid isomerase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0008859: exoribonuclease II activity0.00E+00
6GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
7GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0008887: glycerate kinase activity0.00E+00
10GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
11GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
16GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
17GO:0019843: rRNA binding2.72E-13
18GO:0004033: aldo-keto reductase (NADP) activity3.75E-07
19GO:0005528: FK506 binding4.79E-07
20GO:0003735: structural constituent of ribosome7.48E-07
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.79E-07
22GO:0016168: chlorophyll binding8.82E-07
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.64E-06
24GO:0022891: substrate-specific transmembrane transporter activity3.46E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.24E-04
26GO:0043495: protein anchor1.24E-04
27GO:0019899: enzyme binding4.66E-04
28GO:0016041: glutamate synthase (ferredoxin) activity4.67E-04
29GO:0004328: formamidase activity4.67E-04
30GO:0000248: C-5 sterol desaturase activity4.67E-04
31GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.67E-04
32GO:0090422: thiamine pyrophosphate transporter activity4.67E-04
33GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.67E-04
34GO:0080132: fatty acid alpha-hydroxylase activity4.67E-04
35GO:0003867: 4-aminobutyrate transaminase activity4.67E-04
36GO:0005080: protein kinase C binding4.67E-04
37GO:0045485: omega-6 fatty acid desaturase activity4.67E-04
38GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.67E-04
39GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.08E-04
40GO:0042389: omega-3 fatty acid desaturase activity1.01E-03
41GO:0010297: heteropolysaccharide binding1.01E-03
42GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.01E-03
43GO:0004617: phosphoglycerate dehydrogenase activity1.01E-03
44GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity1.01E-03
45GO:0004047: aminomethyltransferase activity1.01E-03
46GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.01E-03
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.01E-03
48GO:0008967: phosphoglycolate phosphatase activity1.01E-03
49GO:0070402: NADPH binding1.64E-03
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.64E-03
51GO:0016531: copper chaperone activity1.64E-03
52GO:0019829: cation-transporting ATPase activity1.64E-03
53GO:0017150: tRNA dihydrouridine synthase activity1.64E-03
54GO:0045548: phenylalanine ammonia-lyase activity1.64E-03
55GO:0004148: dihydrolipoyl dehydrogenase activity1.64E-03
56GO:0004075: biotin carboxylase activity1.64E-03
57GO:0003935: GTP cyclohydrolase II activity1.64E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.64E-03
59GO:0016491: oxidoreductase activity1.65E-03
60GO:0043023: ribosomal large subunit binding2.38E-03
61GO:0017089: glycolipid transporter activity2.38E-03
62GO:0004375: glycine dehydrogenase (decarboxylating) activity2.38E-03
63GO:0016149: translation release factor activity, codon specific2.38E-03
64GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.38E-03
65GO:0031409: pigment binding2.46E-03
66GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.46E-03
67GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.46E-03
68GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.46E-03
69GO:0015079: potassium ion transmembrane transporter activity3.01E-03
70GO:0004345: glucose-6-phosphate dehydrogenase activity3.20E-03
71GO:0051861: glycolipid binding3.20E-03
72GO:0052793: pectin acetylesterase activity3.20E-03
73GO:0051538: 3 iron, 4 sulfur cluster binding4.10E-03
74GO:0003989: acetyl-CoA carboxylase activity4.10E-03
75GO:0009922: fatty acid elongase activity4.10E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity5.08E-03
77GO:0004332: fructose-bisphosphate aldolase activity5.08E-03
78GO:0016208: AMP binding5.08E-03
79GO:0004130: cytochrome-c peroxidase activity5.08E-03
80GO:0016688: L-ascorbate peroxidase activity5.08E-03
81GO:0042578: phosphoric ester hydrolase activity5.08E-03
82GO:0050662: coenzyme binding5.85E-03
83GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.13E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.13E-03
85GO:0048038: quinone binding6.73E-03
86GO:0008235: metalloexopeptidase activity7.25E-03
87GO:0003824: catalytic activity8.37E-03
88GO:0043022: ribosome binding8.44E-03
89GO:0015078: hydrogen ion transmembrane transporter activity9.69E-03
90GO:0005375: copper ion transmembrane transporter activity9.69E-03
91GO:0003747: translation release factor activity1.10E-02
92GO:0005381: iron ion transmembrane transporter activity1.24E-02
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.28E-02
94GO:0008047: enzyme activator activity1.38E-02
95GO:0004805: trehalose-phosphatase activity1.38E-02
96GO:0004177: aminopeptidase activity1.53E-02
97GO:0005089: Rho guanyl-nucleotide exchange factor activity1.53E-02
98GO:0015386: potassium:proton antiporter activity1.53E-02
99GO:0004089: carbonate dehydratase activity1.85E-02
100GO:0031072: heat shock protein binding1.85E-02
101GO:0050661: NADP binding1.85E-02
102GO:0000175: 3'-5'-exoribonuclease activity1.85E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.85E-02
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.85E-02
105GO:0005315: inorganic phosphate transmembrane transporter activity1.85E-02
106GO:0004364: glutathione transferase activity2.01E-02
107GO:0008266: poly(U) RNA binding2.01E-02
108GO:0008146: sulfotransferase activity2.19E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding2.27E-02
110GO:0042802: identical protein binding2.34E-02
111GO:0015293: symporter activity2.36E-02
112GO:0051536: iron-sulfur cluster binding2.54E-02
113GO:0051287: NAD binding2.54E-02
114GO:0043424: protein histidine kinase binding2.73E-02
115GO:0008168: methyltransferase activity2.85E-02
116GO:0004540: ribonuclease activity2.92E-02
117GO:0004176: ATP-dependent peptidase activity2.92E-02
118GO:0030570: pectate lyase activity3.31E-02
119GO:0016787: hydrolase activity3.37E-02
120GO:0008514: organic anion transmembrane transporter activity3.51E-02
121GO:0047134: protein-disulfide reductase activity3.72E-02
122GO:0016746: transferase activity, transferring acyl groups4.14E-02
123GO:0005509: calcium ion binding4.32E-02
124GO:0004791: thioredoxin-disulfide reductase activity4.37E-02
125GO:0004872: receptor activity4.59E-02
126GO:0016762: xyloglucan:xyloglucosyl transferase activity4.81E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.85E-82
2GO:0009941: chloroplast envelope9.66E-38
3GO:0009535: chloroplast thylakoid membrane1.08E-37
4GO:0009570: chloroplast stroma5.58E-29
5GO:0009579: thylakoid1.49E-24
6GO:0009543: chloroplast thylakoid lumen2.49E-22
7GO:0009534: chloroplast thylakoid9.35E-15
8GO:0031977: thylakoid lumen5.88E-13
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.48E-13
10GO:0005840: ribosome1.26E-09
11GO:0009654: photosystem II oxygen evolving complex1.43E-08
12GO:0009523: photosystem II1.76E-07
13GO:0031969: chloroplast membrane3.19E-06
14GO:0019898: extrinsic component of membrane4.87E-06
15GO:0030095: chloroplast photosystem II7.70E-06
16GO:0042651: thylakoid membrane1.96E-05
17GO:0010287: plastoglobule7.20E-05
18GO:0009706: chloroplast inner membrane3.32E-04
19GO:0015934: large ribosomal subunit3.74E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]4.67E-04
21GO:0009782: photosystem I antenna complex4.67E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.67E-04
23GO:0016021: integral component of membrane5.01E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex1.01E-03
25GO:0042170: plastid membrane1.01E-03
26GO:0010319: stromule1.23E-03
27GO:0009536: plastid1.38E-03
28GO:0009528: plastid inner membrane1.64E-03
29GO:0030076: light-harvesting complex2.21E-03
30GO:0005960: glycine cleavage complex2.38E-03
31GO:0009527: plastid outer membrane3.20E-03
32GO:0048046: apoplast4.07E-03
33GO:0000178: exosome (RNase complex)4.10E-03
34GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)5.08E-03
35GO:0031209: SCAR complex5.08E-03
36GO:0009533: chloroplast stromal thylakoid7.25E-03
37GO:0016020: membrane8.07E-03
38GO:0005778: peroxisomal membrane8.68E-03
39GO:0009539: photosystem II reaction center9.69E-03
40GO:0005763: mitochondrial small ribosomal subunit1.10E-02
41GO:0016324: apical plasma membrane1.38E-02
42GO:0022626: cytosolic ribosome1.41E-02
43GO:0005759: mitochondrial matrix1.53E-02
44GO:0000311: plastid large ribosomal subunit1.69E-02
45GO:0032040: small-subunit processome1.69E-02
46GO:0015935: small ribosomal subunit2.92E-02
47GO:0009532: plastid stroma2.92E-02
48GO:0009522: photosystem I4.37E-02
<
Gene type



Gene DE type