co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002191: cap-dependent translational initiation	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0039694: viral RNA genome replication	0.00E+00
5	GO:0006680: glucosylceramide catabolic process	5.64E-05
6	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	5.64E-05
7	GO:0006422: aspartyl-tRNA aminoacylation	5.64E-05
8	GO:0042254: ribosome biogenesis	7.20E-05
9	GO:0015706: nitrate transport	7.64E-05
10	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.37E-04
11	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.37E-04
12	GO:0080055: low-affinity nitrate transport	2.34E-04
13	GO:0071494: cellular response to UV-C	2.34E-04
14	GO:0010501: RNA secondary structure unwinding	2.80E-04
15	GO:0048194: Golgi vesicle budding	3.41E-04
16	GO:0007276: gamete generation	3.41E-04
17	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	4.56E-04
18	GO:0060548: negative regulation of cell death	4.56E-04
19	GO:0046345: abscisic acid catabolic process	4.56E-04
20	GO:0042128: nitrate assimilation	5.97E-04
21	GO:0001731: formation of translation preinitiation complex	7.07E-04
22	GO:0016070: RNA metabolic process	7.07E-04
23	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	8.44E-04
24	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.44E-04
25	GO:0001522: pseudouridine synthesis	1.13E-03
26	GO:0000028: ribosomal small subunit assembly	1.13E-03
27	GO:0006002: fructose 6-phosphate metabolic process	1.29E-03
28	GO:0046685: response to arsenic-containing substance	1.45E-03
29	GO:0006364: rRNA processing	1.47E-03
30	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.79E-03
31	GO:0010162: seed dormancy process	1.79E-03
32	GO:0072593: reactive oxygen species metabolic process	1.97E-03
33	GO:0009553: embryo sac development	2.01E-03
34	GO:0010582: floral meristem determinacy	2.16E-03
35	GO:0010102: lateral root morphogenesis	2.36E-03
36	GO:0006446: regulation of translational initiation	2.56E-03
37	GO:0010053: root epidermal cell differentiation	2.76E-03
38	GO:0010167: response to nitrate	2.76E-03
39	GO:0009944: polarity specification of adaxial/abaxial axis	3.18E-03
40	GO:0000027: ribosomal large subunit assembly	3.18E-03
41	GO:0030150: protein import into mitochondrial matrix	3.18E-03
42	GO:0051302: regulation of cell division	3.40E-03
43	GO:0031348: negative regulation of defense response	3.86E-03
44	GO:0009294: DNA mediated transformation	4.10E-03
45	GO:0010227: floral organ abscission	4.10E-03
46	GO:0042147: retrograde transport, endosome to Golgi	4.58E-03
47	GO:0031047: gene silencing by RNA	6.15E-03
48	GO:0019760: glucosinolate metabolic process	6.71E-03
49	GO:0042742: defense response to bacterium	7.45E-03
50	GO:0050832: defense response to fungus	7.58E-03
51	GO:0001666: response to hypoxia	7.59E-03
52	GO:0006974: cellular response to DNA damage stimulus	8.19E-03
53	GO:0032259: methylation	9.58E-03
54	GO:0006499: N-terminal protein myristoylation	9.78E-03
55	GO:0006468: protein phosphorylation	9.81E-03
56	GO:0000154: rRNA modification	1.40E-02
57	GO:0006857: oligopeptide transport	1.67E-02
58	GO:0006096: glycolytic process	1.79E-02
59	GO:0009626: plant-type hypersensitive response	1.88E-02
60	GO:0009620: response to fungus	1.92E-02
61	GO:0006952: defense response	1.94E-02
62	GO:0016569: covalent chromatin modification	1.96E-02
63	GO:0006396: RNA processing	2.09E-02
64	GO:0042744: hydrogen peroxide catabolic process	2.63E-02
65	GO:0006413: translational initiation	2.87E-02
66	GO:0045490: pectin catabolic process	3.02E-02
67	GO:0010228: vegetative to reproductive phase transition of meristem	3.12E-02
68	GO:0007166: cell surface receptor signaling pathway	3.32E-02
69	GO:0009617: response to bacterium	3.42E-02
70	GO:0010468: regulation of gene expression	3.42E-02
71	GO:0009826: unidimensional cell growth	4.01E-02
72	GO:0015031: protein transport	4.57E-02
73	GO:0009409: response to cold	4.86E-02
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02
75	GO:0010200: response to chitin	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0004164: diphthine synthase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0050220: prostaglandin-E synthase activity	0.00E+00
6	GO:0000166: nucleotide binding	2.63E-07
7	GO:0030515: snoRNA binding	1.74E-05
8	GO:0004348: glucosylceramidase activity	5.64E-05
9	GO:0017151: DEAD/H-box RNA helicase binding	5.64E-05
10	GO:0004815: aspartate-tRNA ligase activity	5.64E-05
11	GO:0001054: RNA polymerase I activity	6.52E-05
12	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.37E-04
13	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.37E-04
14	GO:0043021: ribonucleoprotein complex binding	1.37E-04
15	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.37E-04
16	GO:0008026: ATP-dependent helicase activity	2.12E-04
17	GO:0052692: raffinose alpha-galactosidase activity	2.34E-04
18	GO:0008469: histone-arginine N-methyltransferase activity	2.34E-04
19	GO:0080054: low-affinity nitrate transmembrane transporter activity	2.34E-04
20	GO:0004557: alpha-galactosidase activity	2.34E-04
21	GO:0070628: proteasome binding	4.56E-04
22	GO:0004004: ATP-dependent RNA helicase activity	6.28E-04
23	GO:0008168: methyltransferase activity	6.70E-04
24	GO:0005524: ATP binding	7.74E-04
25	GO:0004012: phospholipid-translocating ATPase activity	8.44E-04
26	GO:0003872: 6-phosphofructokinase activity	9.85E-04
27	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.13E-03
28	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.47E-03
29	GO:0015112: nitrate transmembrane transporter activity	1.62E-03
30	GO:0004713: protein tyrosine kinase activity	1.79E-03
31	GO:0004386: helicase activity	2.26E-03
32	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.36E-03
33	GO:0004190: aspartic-type endopeptidase activity	2.76E-03
34	GO:0003954: NADH dehydrogenase activity	3.18E-03
35	GO:0004407: histone deacetylase activity	3.18E-03
36	GO:0033612: receptor serine/threonine kinase binding	3.63E-03
37	GO:0004872: receptor activity	5.61E-03
38	GO:0043531: ADP binding	5.99E-03
39	GO:0004721: phosphoprotein phosphatase activity	8.50E-03
40	GO:0003723: RNA binding	9.97E-03
41	GO:0003746: translation elongation factor activity	1.08E-02
42	GO:0003697: single-stranded DNA binding	1.08E-02
43	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.15E-02
44	GO:0015293: symporter activity	1.40E-02
45	GO:0015035: protein disulfide oxidoreductase activity	2.09E-02
46	GO:0008565: protein transporter activity	2.73E-02
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.87E-02
48	GO:0005525: GTP binding	2.93E-02
49	GO:0003743: translation initiation factor activity	3.37E-02
50	GO:0016301: kinase activity	3.66E-02
51	GO:0000287: magnesium ion binding	4.06E-02
52	GO:0004601: peroxidase activity	4.12E-02
53	GO:0004497: monooxygenase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005730: nucleolus	3.26E-10
4	GO:0005736: DNA-directed RNA polymerase I complex	3.71E-05
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	5.64E-05
6	GO:0032040: small-subunit processome	7.64E-05
7	GO:0031304: intrinsic component of mitochondrial inner membrane	1.37E-04
8	GO:0070545: PeBoW complex	1.37E-04
9	GO:0005945: 6-phosphofructokinase complex	5.78E-04
10	GO:0016282: eukaryotic 43S preinitiation complex	7.07E-04
11	GO:0031428: box C/D snoRNP complex	7.07E-04
12	GO:0030904: retromer complex	7.07E-04
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.88E-04
14	GO:0033290: eukaryotic 48S preinitiation complex	8.44E-04
15	GO:0030687: preribosome, large subunit precursor	9.85E-04
16	GO:0043234: protein complex	2.97E-03
17	GO:0005839: proteasome core complex	3.63E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.34E-03
19	GO:0019898: extrinsic component of membrane	5.61E-03
20	GO:0005634: nucleus	5.78E-03
21	GO:0030529: intracellular ribonucleoprotein complex	7.59E-03
22	GO:0000932: P-body	7.59E-03
23	GO:0009506: plasmodesma	8.22E-03
24	GO:0005829: cytosol	1.11E-02
25	GO:0005618: cell wall	1.17E-02
26	GO:0031902: late endosome membrane	1.22E-02
27	GO:0005834: heterotrimeric G-protein complex	1.88E-02
28	GO:0012505: endomembrane system	2.00E-02
29	GO:0005623: cell	2.45E-02
30	GO:0005802: trans-Golgi network	2.86E-02
31	GO:0005774: vacuolar membrane	3.57E-02
32	GO:0005840: ribosome	3.78E-02
33	GO:0005794: Golgi apparatus	4.06E-02
34	GO:0009505: plant-type cell wall	4.51E-02
35	GO:0022625: cytosolic large ribosomal subunit	4.97E-02