co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0009768: photosynthesis, light harvesting in photosystem I	3.89E-28
3	GO:0018298: protein-chromophore linkage	7.17E-19
4	GO:0015979: photosynthesis	1.30E-18
5	GO:0009645: response to low light intensity stimulus	1.56E-12
6	GO:0010218: response to far red light	3.83E-11
7	GO:0010114: response to red light	1.17E-10
8	GO:0009644: response to high light intensity	1.46E-10
9	GO:0009769: photosynthesis, light harvesting in photosystem II	1.71E-09
10	GO:0009637: response to blue light	1.08E-08
11	GO:0009765: photosynthesis, light harvesting	2.00E-07
12	GO:0010196: nonphotochemical quenching	1.14E-06
13	GO:0009269: response to desiccation	1.59E-05
14	GO:0009409: response to cold	7.25E-05
15	GO:0044211: CTP salvage	7.70E-05
16	GO:0030104: water homeostasis	1.07E-04
17	GO:0010600: regulation of auxin biosynthetic process	1.07E-04
18	GO:0044206: UMP salvage	1.07E-04
19	GO:0043097: pyrimidine nucleoside salvage	1.40E-04
20	GO:0009635: response to herbicide	1.74E-04
21	GO:0006206: pyrimidine nucleobase metabolic process	1.74E-04
22	GO:0009416: response to light stimulus	2.04E-04
23	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.11E-04
24	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.11E-04
25	GO:0010161: red light signaling pathway	2.50E-04
26	GO:0010078: maintenance of root meristem identity	2.90E-04
27	GO:0009704: de-etiolation	2.90E-04
28	GO:0010928: regulation of auxin mediated signaling pathway	2.90E-04
29	GO:0090333: regulation of stomatal closure	3.74E-04
30	GO:0008202: steroid metabolic process	4.18E-04
31	GO:0018119: peptidyl-cysteine S-nitrosylation	5.09E-04
32	GO:0009767: photosynthetic electron transport chain	6.04E-04
33	GO:0010207: photosystem II assembly	6.53E-04
34	GO:0010017: red or far-red light signaling pathway	9.65E-04
35	GO:0071215: cellular response to abscisic acid stimulus	1.02E-03
36	GO:0007018: microtubule-based movement	1.31E-03
37	GO:0016126: sterol biosynthetic process	1.83E-03
38	GO:0010119: regulation of stomatal movement	2.41E-03
39	GO:0008643: carbohydrate transport	3.20E-03
40	GO:0009585: red, far-red light phototransduction	3.72E-03
41	GO:0009058: biosynthetic process	5.72E-03
42	GO:0007049: cell cycle	1.01E-02
43	GO:0080167: response to karrikin	1.09E-02
44	GO:0006869: lipid transport	1.32E-02
45	GO:0009735: response to cytokinin	2.02E-02
46	GO:0051301: cell division	2.29E-02
47	GO:0006468: protein phosphorylation	3.39E-02
48	GO:0042742: defense response to bacterium	3.56E-02

Rank	GO Term	Adjusted P value
1	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
2	GO:0031409: pigment binding	1.99E-25
3	GO:0016168: chlorophyll binding	4.72E-22
4	GO:0046872: metal ion binding	2.14E-05
5	GO:0004845: uracil phosphoribosyltransferase activity	1.07E-04
6	GO:0004506: squalene monooxygenase activity	1.07E-04
7	GO:0004849: uridine kinase activity	2.11E-04
8	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.32E-04
9	GO:0008142: oxysterol binding	3.32E-04
10	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.33E-03
11	GO:0035091: phosphatidylinositol binding	3.20E-03
12	GO:0005198: structural molecule activity	3.29E-03
13	GO:0003777: microtubule motor activity	3.98E-03
14	GO:0022857: transmembrane transporter activity	4.54E-03
15	GO:0015297: antiporter activity	6.67E-03
16	GO:0005515: protein binding	6.85E-03
17	GO:0008017: microtubule binding	7.11E-03
18	GO:0050660: flavin adenine dinucleotide binding	1.03E-02
19	GO:0016301: kinase activity	1.78E-02
20	GO:0008289: lipid binding	1.81E-02
21	GO:0016887: ATPase activity	1.95E-02
22	GO:0004674: protein serine/threonine kinase activity	2.15E-02
23	GO:0005525: GTP binding	3.07E-02
24	GO:0005509: calcium ion binding	3.36E-02
25	GO:0005524: ATP binding	4.35E-02
26	GO:0046983: protein dimerization activity	4.37E-02
27	GO:0004672: protein kinase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009522: photosystem I	2.49E-23
4	GO:0009579: thylakoid	1.33E-20
5	GO:0009534: chloroplast thylakoid	1.42E-20
6	GO:0030076: light-harvesting complex	2.23E-19
7	GO:0010287: plastoglobule	8.90E-19
8	GO:0009535: chloroplast thylakoid membrane	4.11E-17
9	GO:0009941: chloroplast envelope	1.78E-13
10	GO:0009523: photosystem II	3.79E-12
11	GO:0009517: PSII associated light-harvesting complex II	1.25E-10
12	GO:0009507: chloroplast	7.22E-09
13	GO:0042651: thylakoid membrane	1.41E-05
14	GO:0016021: integral component of membrane	4.42E-05
15	GO:0009533: chloroplast stromal thylakoid	2.50E-04
16	GO:0009538: photosystem I reaction center	2.90E-04
17	GO:0016020: membrane	3.84E-04
18	GO:0030095: chloroplast photosystem II	6.53E-04
19	GO:0009654: photosystem II oxygen evolving complex	8.59E-04
20	GO:0005871: kinesin complex	1.13E-03
21	GO:0019898: extrinsic component of membrane	1.37E-03
22	GO:0031977: thylakoid lumen	2.88E-03
23	GO:0031966: mitochondrial membrane	3.54E-03
24	GO:0009543: chloroplast thylakoid lumen	5.52E-03
25	GO:0005874: microtubule	1.06E-02