co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
2	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
3	GO:0000188: inactivation of MAPK activity	0.00E+00
4	GO:0006182: cGMP biosynthetic process	0.00E+00
5	GO:0006903: vesicle targeting	0.00E+00
6	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
7	GO:0000162: tryptophan biosynthetic process	2.57E-08
8	GO:0009851: auxin biosynthetic process	1.50E-05
9	GO:1901183: positive regulation of camalexin biosynthetic process	6.42E-05
10	GO:0052544: defense response by callose deposition in cell wall	7.90E-05
11	GO:0019483: beta-alanine biosynthetic process	1.55E-04
12	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.55E-04
13	GO:0019441: tryptophan catabolic process to kynurenine	1.55E-04
14	GO:0080183: response to photooxidative stress	1.55E-04
15	GO:0050684: regulation of mRNA processing	1.55E-04
16	GO:0002215: defense response to nematode	1.55E-04
17	GO:0006212: uracil catabolic process	1.55E-04
18	GO:0006012: galactose metabolic process	2.59E-04
19	GO:0032784: regulation of DNA-templated transcription, elongation	2.63E-04
20	GO:0006612: protein targeting to membrane	3.82E-04
21	GO:0006893: Golgi to plasma membrane transport	3.82E-04
22	GO:0072334: UDP-galactose transmembrane transport	3.82E-04
23	GO:0009399: nitrogen fixation	3.82E-04
24	GO:0006542: glutamine biosynthetic process	5.10E-04
25	GO:0010222: stem vascular tissue pattern formation	5.10E-04
26	GO:0048830: adventitious root development	5.10E-04
27	GO:0010600: regulation of auxin biosynthetic process	5.10E-04
28	GO:0009617: response to bacterium	6.30E-04
29	GO:0001666: response to hypoxia	6.32E-04
30	GO:0048015: phosphatidylinositol-mediated signaling	6.45E-04
31	GO:0006090: pyruvate metabolic process	6.45E-04
32	GO:0007029: endoplasmic reticulum organization	6.45E-04
33	GO:0010225: response to UV-C	6.45E-04
34	GO:0034052: positive regulation of plant-type hypersensitive response	6.45E-04
35	GO:0006014: D-ribose metabolic process	7.90E-04
36	GO:0009759: indole glucosinolate biosynthetic process	7.90E-04
37	GO:0010311: lateral root formation	8.54E-04
38	GO:0009423: chorismate biosynthetic process	9.40E-04
39	GO:0006897: endocytosis	1.20E-03
40	GO:0010120: camalexin biosynthetic process	1.44E-03
41	GO:0043562: cellular response to nitrogen levels	1.44E-03
42	GO:0009808: lignin metabolic process	1.44E-03
43	GO:0060321: acceptance of pollen	1.44E-03
44	GO:0007338: single fertilization	1.62E-03
45	GO:0009051: pentose-phosphate shunt, oxidative branch	1.62E-03
46	GO:0008202: steroid metabolic process	1.81E-03
47	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.81E-03
48	GO:0042742: defense response to bacterium	1.89E-03
49	GO:0007064: mitotic sister chromatid cohesion	2.01E-03
50	GO:0009688: abscisic acid biosynthetic process	2.01E-03
51	GO:0043069: negative regulation of programmed cell death	2.01E-03
52	GO:0009641: shade avoidance	2.01E-03
53	GO:0072593: reactive oxygen species metabolic process	2.21E-03
54	GO:0009073: aromatic amino acid family biosynthetic process	2.21E-03
55	GO:0009684: indoleacetic acid biosynthetic process	2.21E-03
56	GO:0009682: induced systemic resistance	2.21E-03
57	GO:0009620: response to fungus	2.24E-03
58	GO:0071365: cellular response to auxin stimulus	2.42E-03
59	GO:0000266: mitochondrial fission	2.42E-03
60	GO:0009742: brassinosteroid mediated signaling pathway	2.60E-03
61	GO:0006807: nitrogen compound metabolic process	2.64E-03
62	GO:0006108: malate metabolic process	2.64E-03
63	GO:0055046: microgametogenesis	2.64E-03
64	GO:0046854: phosphatidylinositol phosphorylation	3.09E-03
65	GO:0009969: xyloglucan biosynthetic process	3.09E-03
66	GO:0046686: response to cadmium ion	3.71E-03
67	GO:0051260: protein homooligomerization	4.08E-03
68	GO:0010150: leaf senescence	4.20E-03
69	GO:0035428: hexose transmembrane transport	4.34E-03
70	GO:0006885: regulation of pH	5.72E-03
71	GO:0010182: sugar mediated signaling pathway	5.72E-03
72	GO:0046323: glucose import	5.72E-03
73	GO:0019252: starch biosynthetic process	6.31E-03
74	GO:0016032: viral process	6.92E-03
75	GO:0009630: gravitropism	6.92E-03
76	GO:0071281: cellular response to iron ion	7.24E-03
77	GO:0009723: response to ethylene	7.49E-03
78	GO:0010252: auxin homeostasis	7.55E-03
79	GO:0009567: double fertilization forming a zygote and endosperm	7.55E-03
80	GO:0006904: vesicle docking involved in exocytosis	7.88E-03
81	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.31E-03
82	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.88E-03
83	GO:0042128: nitrate assimilation	9.22E-03
84	GO:0045454: cell redox homeostasis	9.62E-03
85	GO:0050832: defense response to fungus	9.85E-03
86	GO:0009817: defense response to fungus, incompatible interaction	1.03E-02
87	GO:0009651: response to salt stress	1.18E-02
88	GO:0045087: innate immune response	1.22E-02
89	GO:0016051: carbohydrate biosynthetic process	1.22E-02
90	GO:0006099: tricarboxylic acid cycle	1.25E-02
91	GO:0006468: protein phosphorylation	1.33E-02
92	GO:0006887: exocytosis	1.37E-02
93	GO:0010114: response to red light	1.45E-02
94	GO:0051707: response to other organism	1.45E-02
95	GO:0000209: protein polyubiquitination	1.50E-02
96	GO:0005975: carbohydrate metabolic process	1.58E-02
97	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.66E-02
98	GO:0006812: cation transport	1.71E-02
99	GO:0009846: pollen germination	1.71E-02
100	GO:0009809: lignin biosynthetic process	1.80E-02
101	GO:0006813: potassium ion transport	1.80E-02
102	GO:0010224: response to UV-B	1.84E-02
103	GO:0009735: response to cytokinin	1.93E-02
104	GO:0009626: plant-type hypersensitive response	2.12E-02
105	GO:0009611: response to wounding	2.16E-02
106	GO:0006952: defense response	2.51E-02
107	GO:0006633: fatty acid biosynthetic process	3.19E-02
108	GO:0040008: regulation of growth	3.30E-02
109	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.69E-02
110	GO:0006470: protein dephosphorylation	3.75E-02
111	GO:0007166: cell surface receptor signaling pathway	3.75E-02
112	GO:0010468: regulation of gene expression	3.86E-02
113	GO:0009826: unidimensional cell growth	4.52E-02
114	GO:0009733: response to auxin	4.78E-02
115	GO:0009860: pollen tube growth	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0004034: aldose 1-epimerase activity	2.83E-05
4	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	6.42E-05
5	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	6.42E-05
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.42E-05
7	GO:0033984: indole-3-glycerol-phosphate lyase activity	6.42E-05
8	GO:0016303: 1-phosphatidylinositol-3-kinase activity	6.42E-05
9	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.55E-04
10	GO:0004061: arylformamidase activity	1.55E-04
11	GO:0032934: sterol binding	1.55E-04
12	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.63E-04
13	GO:0004383: guanylate cyclase activity	2.63E-04
14	GO:0016595: glutamate binding	2.63E-04
15	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.63E-04
16	GO:0004049: anthranilate synthase activity	2.63E-04
17	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.82E-04
18	GO:0004470: malic enzyme activity	5.10E-04
19	GO:0004031: aldehyde oxidase activity	5.10E-04
20	GO:0050302: indole-3-acetaldehyde oxidase activity	5.10E-04
21	GO:0010279: indole-3-acetic acid amido synthetase activity	5.10E-04
22	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	5.10E-04
23	GO:0004834: tryptophan synthase activity	5.10E-04
24	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.10E-04
25	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	5.10E-04
26	GO:0004356: glutamate-ammonia ligase activity	6.45E-04
27	GO:0005459: UDP-galactose transmembrane transporter activity	6.45E-04
28	GO:0008948: oxaloacetate decarboxylase activity	6.45E-04
29	GO:0004747: ribokinase activity	9.40E-04
30	GO:0030246: carbohydrate binding	1.02E-03
31	GO:0008143: poly(A) binding	1.10E-03
32	GO:0008865: fructokinase activity	1.26E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	1.40E-03
34	GO:0008142: oxysterol binding	1.44E-03
35	GO:0008171: O-methyltransferase activity	2.01E-03
36	GO:0004713: protein tyrosine kinase activity	2.01E-03
37	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.42E-03
38	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.87E-03
39	GO:0004725: protein tyrosine phosphatase activity	3.33E-03
40	GO:0005451: monovalent cation:proton antiporter activity	5.43E-03
41	GO:0010181: FMN binding	6.01E-03
42	GO:0005355: glucose transmembrane transporter activity	6.01E-03
43	GO:0016853: isomerase activity	6.01E-03
44	GO:0015299: solute:proton antiporter activity	6.01E-03
45	GO:0015385: sodium:proton antiporter activity	7.24E-03
46	GO:0030247: polysaccharide binding	9.57E-03
47	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.14E-02
48	GO:0009055: electron carrier activity	1.27E-02
49	GO:0008422: beta-glucosidase activity	1.29E-02
50	GO:0004672: protein kinase activity	1.51E-02
51	GO:0051287: NAD binding	1.66E-02
52	GO:0016301: kinase activity	1.82E-02
53	GO:0005524: ATP binding	1.83E-02
54	GO:0008234: cysteine-type peptidase activity	1.93E-02
55	GO:0004674: protein serine/threonine kinase activity	2.10E-02
56	GO:0015035: protein disulfide oxidoreductase activity	2.36E-02
57	GO:0016746: transferase activity, transferring acyl groups	2.36E-02
58	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.79E-02
59	GO:0005507: copper ion binding	3.01E-02
60	GO:0015144: carbohydrate transmembrane transporter activity	3.08E-02
61	GO:0005351: sugar:proton symporter activity	3.35E-02
62	GO:0008017: microtubule binding	3.52E-02
63	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.04E-02
64	GO:0005506: iron ion binding	4.20E-02
65	GO:0003682: chromatin binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005942: phosphatidylinositol 3-kinase complex	0.00E+00
2	GO:0045252: oxoglutarate dehydrogenase complex	6.42E-05
3	GO:0005950: anthranilate synthase complex	1.55E-04
4	GO:0005886: plasma membrane	1.63E-04
5	GO:0005618: cell wall	2.66E-04
6	GO:0030173: integral component of Golgi membrane	9.40E-04
7	GO:0016021: integral component of membrane	1.10E-03
8	GO:0005829: cytosol	1.16E-03
9	GO:0030131: clathrin adaptor complex	1.26E-03
10	GO:0010494: cytoplasmic stress granule	1.62E-03
11	GO:0030125: clathrin vesicle coat	2.01E-03
12	GO:0030176: integral component of endoplasmic reticulum membrane	3.09E-03
13	GO:0009524: phragmoplast	3.22E-03
14	GO:0005905: clathrin-coated pit	4.08E-03
15	GO:0000145: exocyst	6.92E-03
16	GO:0005783: endoplasmic reticulum	1.11E-02
17	GO:0009506: plasmodesma	1.16E-02
18	GO:0005774: vacuolar membrane	1.24E-02
19	GO:0090406: pollen tube	1.45E-02
20	GO:0005856: cytoskeleton	1.58E-02
21	GO:0005794: Golgi apparatus	2.06E-02
22	GO:0005623: cell	2.76E-02
23	GO:0016020: membrane	3.13E-02
24	GO:0009570: chloroplast stroma	3.21E-02
25	GO:0005615: extracellular space	3.69E-02
26	GO:0048046: apoplast	4.67E-02
27	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.96E-02