co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002188: translation reinitiation	0.00E+00
2	GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	0.00E+00
3	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
4	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
5	GO:0080056: petal vascular tissue pattern formation	0.00E+00
6	GO:0048312: intracellular distribution of mitochondria	0.00E+00
7	GO:0031564: transcription antitermination	0.00E+00
8	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
9	GO:0001732: formation of cytoplasmic translation initiation complex	0.00E+00
10	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.76E-05
11	GO:0006422: aspartyl-tRNA aminoacylation	2.76E-05
12	GO:0000027: ribosomal large subunit assembly	5.28E-05
13	GO:0006996: organelle organization	7.01E-05
14	GO:2000072: regulation of defense response to fungus, incompatible interaction	7.01E-05
15	GO:0060149: negative regulation of posttranscriptional gene silencing	7.01E-05
16	GO:0034470: ncRNA processing	7.01E-05
17	GO:0006421: asparaginyl-tRNA aminoacylation	1.23E-04
18	GO:0042254: ribosome biogenesis	2.20E-04
19	GO:0000460: maturation of 5.8S rRNA	2.48E-04
20	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	2.48E-04
21	GO:0045454: cell redox homeostasis	3.63E-04
22	GO:0016070: RNA metabolic process	3.92E-04
23	GO:0000470: maturation of LSU-rRNA	3.92E-04
24	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.69E-04
25	GO:0006397: mRNA processing	5.00E-04
26	GO:0006364: rRNA processing	6.17E-04
27	GO:0000028: ribosomal small subunit assembly	6.32E-04
28	GO:0010093: specification of floral organ identity	7.18E-04
29	GO:0009553: embryo sac development	8.40E-04
30	GO:0000103: sulfate assimilation	9.92E-04
31	GO:0010162: seed dormancy process	9.92E-04
32	GO:0010588: cotyledon vascular tissue pattern formation	1.29E-03
33	GO:0006413: translational initiation	1.36E-03
34	GO:0009944: polarity specification of adaxial/abaxial axis	1.73E-03
35	GO:0030150: protein import into mitochondrial matrix	1.73E-03
36	GO:0010187: negative regulation of seed germination	1.73E-03
37	GO:0009294: DNA mediated transformation	2.22E-03
38	GO:0000413: protein peptidyl-prolyl isomerization	2.61E-03
39	GO:0042391: regulation of membrane potential	2.61E-03
40	GO:0006662: glycerol ether metabolic process	2.74E-03
41	GO:0010305: leaf vascular tissue pattern formation	2.74E-03
42	GO:0030163: protein catabolic process	3.45E-03
43	GO:0006499: N-terminal protein myristoylation	5.21E-03
44	GO:0009631: cold acclimation	5.38E-03
45	GO:0009867: jasmonic acid mediated signaling pathway	5.73E-03
46	GO:0045087: innate immune response	5.73E-03
47	GO:0034599: cellular response to oxidative stress	5.91E-03
48	GO:0009793: embryo development ending in seed dormancy	6.71E-03
49	GO:0006417: regulation of translation	9.01E-03
50	GO:0048367: shoot system development	9.65E-03
51	GO:0009624: response to nematode	1.07E-02
52	GO:0000398: mRNA splicing, via spliceosome	1.19E-02
53	GO:0009845: seed germination	1.33E-02
54	GO:0009790: embryo development	1.40E-02
55	GO:0006470: protein dephosphorylation	1.74E-02
56	GO:0008380: RNA splicing	1.79E-02
57	GO:0006970: response to osmotic stress	2.27E-02
58	GO:0048366: leaf development	2.42E-02
59	GO:0045892: negative regulation of transcription, DNA-templated	2.89E-02
60	GO:0032259: methylation	3.22E-02
61	GO:0009408: response to heat	3.32E-02
62	GO:0048364: root development	3.42E-02
63	GO:0009734: auxin-activated signaling pathway	4.24E-02
64	GO:0050832: defense response to fungus	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0000166: nucleotide binding	2.85E-07
5	GO:0042134: rRNA primary transcript binding	2.76E-05
6	GO:0004815: aspartate-tRNA ligase activity	2.76E-05
7	GO:0015035: protein disulfide oxidoreductase activity	5.39E-05
8	GO:0004816: asparagine-tRNA ligase activity	1.23E-04
9	GO:0003723: RNA binding	4.48E-04
10	GO:0030515: snoRNA binding	5.49E-04
11	GO:0003729: mRNA binding	6.58E-04
12	GO:0003724: RNA helicase activity	7.18E-04
13	GO:0008026: ATP-dependent helicase activity	9.12E-04
14	GO:0008794: arsenate reductase (glutaredoxin) activity	1.09E-03
15	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.29E-03
16	GO:0003712: transcription cofactor activity	1.50E-03
17	GO:0030552: cAMP binding	1.50E-03
18	GO:0030553: cGMP binding	1.50E-03
19	GO:0003743: translation initiation factor activity	1.69E-03
20	GO:0004407: histone deacetylase activity	1.73E-03
21	GO:0005216: ion channel activity	1.85E-03
22	GO:0047134: protein-disulfide reductase activity	2.48E-03
23	GO:0005249: voltage-gated potassium channel activity	2.61E-03
24	GO:0030551: cyclic nucleotide binding	2.61E-03
25	GO:0004791: thioredoxin-disulfide reductase activity	2.88E-03
26	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-03
27	GO:0009055: electron carrier activity	4.32E-03
28	GO:0004721: phosphoprotein phosphatase activity	4.54E-03
29	GO:0004004: ATP-dependent RNA helicase activity	4.54E-03
30	GO:0003697: single-stranded DNA binding	5.73E-03
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.59E-03
32	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.40E-03
33	GO:0003690: double-stranded DNA binding	8.60E-03
34	GO:0005524: ATP binding	1.75E-02
35	GO:0008168: methyltransferase activity	2.10E-02
36	GO:0000287: magnesium ion binding	2.13E-02
37	GO:0004722: protein serine/threonine phosphatase activity	3.05E-02
38	GO:0016887: ATPase activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e	0.00E+00
2	GO:0055087: Ski complex	0.00E+00
3	GO:0005829: cytosol	2.56E-07
4	GO:0005730: nucleolus	6.83E-07
5	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.37E-05
6	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	2.76E-05
7	GO:0043614: multi-eIF complex	2.76E-05
8	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	2.76E-05
9	GO:0030687: preribosome, large subunit precursor	5.49E-04
10	GO:0016607: nuclear speck	7.46E-04
11	GO:0005654: nucleoplasm	1.04E-03
12	GO:0005852: eukaryotic translation initiation factor 3 complex	1.09E-03
13	GO:0032040: small-subunit processome	1.19E-03
14	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.35E-03
15	GO:0030529: intracellular ribonucleoprotein complex	4.06E-03
16	GO:0000932: P-body	4.06E-03
17	GO:0019005: SCF ubiquitin ligase complex	4.87E-03
18	GO:0009707: chloroplast outer membrane	4.87E-03
19	GO:0005737: cytoplasm	8.09E-03
20	GO:0005681: spliceosomal complex	9.44E-03
21	GO:0005834: heterotrimeric G-protein complex	9.87E-03
22	GO:0005739: mitochondrion	2.01E-02
23	GO:0005886: plasma membrane	2.07E-02
24	GO:0005743: mitochondrial inner membrane	3.15E-02
25	GO:0005887: integral component of plasma membrane	4.13E-02
26	GO:0005774: vacuolar membrane	4.99E-02