Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901485: positive regulation of transcription factor catabolic process0.00E+00
2GO:0080127: fruit septum development0.00E+00
3GO:0033481: galacturonate biosynthetic process4.60E-05
4GO:0080164: regulation of nitric oxide metabolic process4.60E-05
5GO:0019354: siroheme biosynthetic process4.60E-05
6GO:0007154: cell communication1.13E-04
7GO:0071497: cellular response to freezing1.13E-04
8GO:0051592: response to calcium ion1.13E-04
9GO:0009741: response to brassinosteroid2.31E-04
10GO:0046345: abscisic acid catabolic process3.84E-04
11GO:0010411: xyloglucan metabolic process4.87E-04
12GO:0009164: nucleoside catabolic process4.88E-04
13GO:2000762: regulation of phenylpropanoid metabolic process4.88E-04
14GO:0060918: auxin transport5.98E-04
15GO:1900425: negative regulation of defense response to bacterium5.98E-04
16GO:0003006: developmental process involved in reproduction5.98E-04
17GO:0009612: response to mechanical stimulus7.13E-04
18GO:0050829: defense response to Gram-negative bacterium8.33E-04
19GO:0051510: regulation of unidimensional cell growth8.33E-04
20GO:0010038: response to metal ion8.33E-04
21GO:0031347: regulation of defense response1.03E-03
22GO:0048574: long-day photoperiodism, flowering1.09E-03
23GO:0010099: regulation of photomorphogenesis1.09E-03
24GO:0009585: red, far-red light phototransduction1.14E-03
25GO:0048507: meristem development1.22E-03
26GO:0051865: protein autoubiquitination1.22E-03
27GO:0009638: phototropism1.36E-03
28GO:0006779: porphyrin-containing compound biosynthetic process1.36E-03
29GO:0043069: negative regulation of programmed cell death1.51E-03
30GO:1903507: negative regulation of nucleic acid-templated transcription1.66E-03
31GO:0000038: very long-chain fatty acid metabolic process1.66E-03
32GO:0016024: CDP-diacylglycerol biosynthetic process1.81E-03
33GO:0010582: floral meristem determinacy1.81E-03
34GO:0018107: peptidyl-threonine phosphorylation1.98E-03
35GO:0048467: gynoecium development2.14E-03
36GO:0034605: cellular response to heat2.14E-03
37GO:0010143: cutin biosynthetic process2.14E-03
38GO:0009969: xyloglucan biosynthetic process2.31E-03
39GO:0009225: nucleotide-sugar metabolic process2.31E-03
40GO:0005992: trehalose biosynthetic process2.67E-03
41GO:0010017: red or far-red light signaling pathway3.23E-03
42GO:2000022: regulation of jasmonic acid mediated signaling pathway3.23E-03
43GO:0019722: calcium-mediated signaling3.63E-03
44GO:0000271: polysaccharide biosynthetic process4.04E-03
45GO:0010087: phloem or xylem histogenesis4.04E-03
46GO:0048653: anther development4.04E-03
47GO:0009826: unidimensional cell growth4.05E-03
48GO:0009958: positive gravitropism4.25E-03
49GO:0010268: brassinosteroid homeostasis4.25E-03
50GO:0009646: response to absence of light4.47E-03
51GO:0009791: post-embryonic development4.68E-03
52GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.91E-03
53GO:0002229: defense response to oomycetes4.91E-03
54GO:0016132: brassinosteroid biosynthetic process4.91E-03
55GO:0016567: protein ubiquitination5.24E-03
56GO:0071555: cell wall organization5.32E-03
57GO:0046777: protein autophosphorylation5.57E-03
58GO:0016125: sterol metabolic process5.60E-03
59GO:0009639: response to red or far red light5.60E-03
60GO:0009828: plant-type cell wall loosening5.60E-03
61GO:0007267: cell-cell signaling5.84E-03
62GO:0009733: response to auxin6.16E-03
63GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.57E-03
64GO:0048573: photoperiodism, flowering7.08E-03
65GO:0016311: dephosphorylation7.34E-03
66GO:0048767: root hair elongation7.87E-03
67GO:0010218: response to far red light8.14E-03
68GO:0009753: response to jasmonic acid8.24E-03
69GO:0045087: innate immune response8.96E-03
70GO:0009873: ethylene-activated signaling pathway9.92E-03
71GO:0042542: response to hydrogen peroxide1.04E-02
72GO:0010114: response to red light1.07E-02
73GO:0042546: cell wall biogenesis1.10E-02
74GO:0006486: protein glycosylation1.32E-02
75GO:0051603: proteolysis involved in cellular protein catabolic process1.35E-02
76GO:0009909: regulation of flower development1.42E-02
77GO:0045893: positive regulation of transcription, DNA-templated1.57E-02
78GO:0018105: peptidyl-serine phosphorylation1.73E-02
79GO:0009742: brassinosteroid mediated signaling pathway1.77E-02
80GO:0006468: protein phosphorylation2.14E-02
81GO:0006633: fatty acid biosynthetic process2.34E-02
82GO:0009414: response to water deprivation2.71E-02
83GO:0006351: transcription, DNA-templated3.13E-02
84GO:0009658: chloroplast organization3.42E-02
85GO:0006970: response to osmotic stress3.60E-02
86GO:0009860: pollen tube growth3.60E-02
87GO:0009409: response to cold3.75E-02
88GO:0048366: leaf development3.84E-02
89GO:0080167: response to karrikin3.98E-02
90GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.08E-02
91GO:0010200: response to chitin4.08E-02
92GO:0045454: cell redox homeostasis4.52E-02
93GO:0006952: defense response4.59E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity4.60E-05
3GO:0010295: (+)-abscisic acid 8'-hydroxylase activity1.95E-04
4GO:0033843: xyloglucan 6-xylosyltransferase activity2.85E-04
5GO:0050378: UDP-glucuronate 4-epimerase activity3.84E-04
6GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.98E-04
7GO:0035252: UDP-xylosyltransferase activity5.98E-04
8GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.98E-04
9GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides7.13E-04
10GO:0004805: trehalose-phosphatase activity1.51E-03
11GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.14E-03
12GO:0003714: transcription corepressor activity2.67E-03
13GO:0008134: transcription factor binding2.67E-03
14GO:0004674: protein serine/threonine kinase activity2.79E-03
15GO:0016762: xyloglucan:xyloglucosyl transferase activity4.91E-03
16GO:0016791: phosphatase activity5.60E-03
17GO:0016759: cellulose synthase activity5.60E-03
18GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.84E-03
19GO:0030247: polysaccharide binding7.08E-03
20GO:0016798: hydrolase activity, acting on glycosyl bonds7.08E-03
21GO:0004842: ubiquitin-protein transferase activity8.02E-03
22GO:0004185: serine-type carboxypeptidase activity1.07E-02
23GO:0043621: protein self-association1.13E-02
24GO:0043565: sequence-specific DNA binding1.15E-02
25GO:0016298: lipase activity1.35E-02
26GO:0016746: transferase activity, transferring acyl groups1.73E-02
27GO:0015035: protein disulfide oxidoreductase activity1.73E-02
28GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.81E-02
29GO:0016758: transferase activity, transferring hexosyl groups1.95E-02
30GO:0016301: kinase activity2.33E-02
31GO:0016757: transferase activity, transferring glycosyl groups2.51E-02
32GO:0005515: protein binding2.67E-02
33GO:0005506: iron ion binding2.73E-02
34GO:0044212: transcription regulatory region DNA binding2.77E-02
35GO:0003824: catalytic activity3.04E-02
36GO:0008168: methyltransferase activity3.32E-02
37GO:0004672: protein kinase activity4.06E-02
38GO:0004871: signal transducer activity4.68E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall3.03E-05
2GO:0005615: extracellular space3.06E-03
3GO:0015629: actin cytoskeleton3.43E-03
4GO:0046658: anchored component of plasma membrane3.61E-03
5GO:0031225: anchored component of membrane3.82E-03
6GO:0032580: Golgi cisterna membrane5.60E-03
7GO:0048046: apoplast6.86E-03
8GO:0005618: cell wall7.82E-03
9GO:0005794: Golgi apparatus8.74E-03
10GO:0016021: integral component of membrane1.09E-02
11GO:0005576: extracellular region1.09E-02
12GO:0009506: plasmodesma1.56E-02
13GO:0005802: trans-Golgi network2.19E-02
14GO:0005768: endosome2.50E-02
15GO:0005886: plasma membrane3.09E-02
16GO:0000139: Golgi membrane3.75E-02
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Gene type



Gene DE type