Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006793: phosphorus metabolic process0.00E+00
2GO:0051238: sequestering of metal ion0.00E+00
3GO:0000188: inactivation of MAPK activity0.00E+00
4GO:0006182: cGMP biosynthetic process0.00E+00
5GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
6GO:0010055: atrichoblast differentiation0.00E+00
7GO:0043201: response to leucine0.00E+00
8GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
9GO:0080052: response to histidine0.00E+00
10GO:0046109: uridine biosynthetic process0.00E+00
11GO:0080053: response to phenylalanine0.00E+00
12GO:0006014: D-ribose metabolic process6.24E-05
13GO:0009620: response to fungus1.84E-04
14GO:1902065: response to L-glutamate1.86E-04
15GO:0010265: SCF complex assembly1.86E-04
16GO:0032107: regulation of response to nutrient levels1.86E-04
17GO:0099132: ATP hydrolysis coupled cation transmembrane transport1.86E-04
18GO:0006481: C-terminal protein methylation1.86E-04
19GO:0010941: regulation of cell death1.86E-04
20GO:0010726: positive regulation of hydrogen peroxide metabolic process1.86E-04
21GO:0010421: hydrogen peroxide-mediated programmed cell death1.86E-04
22GO:0006562: proline catabolic process1.86E-04
23GO:0010200: response to chitin2.69E-04
24GO:0042939: tripeptide transport4.19E-04
25GO:0019441: tryptophan catabolic process to kynurenine4.19E-04
26GO:0051592: response to calcium ion4.19E-04
27GO:0010133: proline catabolic process to glutamate4.19E-04
28GO:0009805: coumarin biosynthetic process4.19E-04
29GO:0009866: induced systemic resistance, ethylene mediated signaling pathway4.19E-04
30GO:0060919: auxin influx4.19E-04
31GO:0006468: protein phosphorylation6.55E-04
32GO:0009617: response to bacterium6.76E-04
33GO:0010359: regulation of anion channel activity6.84E-04
34GO:0010351: lithium ion transport6.84E-04
35GO:0010476: gibberellin mediated signaling pathway6.84E-04
36GO:0010325: raffinose family oligosaccharide biosynthetic process6.84E-04
37GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway6.84E-04
38GO:0009636: response to toxic substance7.97E-04
39GO:0006874: cellular calcium ion homeostasis8.15E-04
40GO:0006882: cellular zinc ion homeostasis9.77E-04
41GO:0010116: positive regulation of abscisic acid biosynthetic process9.77E-04
42GO:0006537: glutamate biosynthetic process9.77E-04
43GO:0009052: pentose-phosphate shunt, non-oxidative branch9.77E-04
44GO:0006970: response to osmotic stress1.12E-03
45GO:0042991: transcription factor import into nucleus1.29E-03
46GO:0042938: dipeptide transport1.29E-03
47GO:0045227: capsule polysaccharide biosynthetic process1.29E-03
48GO:0046345: abscisic acid catabolic process1.29E-03
49GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.29E-03
50GO:0033358: UDP-L-arabinose biosynthetic process1.29E-03
51GO:0022622: root system development1.29E-03
52GO:0019252: starch biosynthetic process1.65E-03
53GO:0010225: response to UV-C1.65E-03
54GO:0030308: negative regulation of cell growth1.65E-03
55GO:0006623: protein targeting to vacuole1.65E-03
56GO:0009630: gravitropism1.89E-03
57GO:0006561: proline biosynthetic process2.03E-03
58GO:0010942: positive regulation of cell death2.03E-03
59GO:0015691: cadmium ion transport2.03E-03
60GO:0010315: auxin efflux2.03E-03
61GO:1902456: regulation of stomatal opening2.03E-03
62GO:0032259: methylation2.33E-03
63GO:0048280: vesicle fusion with Golgi apparatus2.43E-03
64GO:0048444: floral organ morphogenesis2.43E-03
65GO:0071470: cellular response to osmotic stress2.43E-03
66GO:0009751: response to salicylic acid2.44E-03
67GO:0009753: response to jasmonic acid2.77E-03
68GO:0030026: cellular manganese ion homeostasis2.87E-03
69GO:1900057: positive regulation of leaf senescence2.87E-03
70GO:0000122: negative regulation of transcription from RNA polymerase II promoter2.87E-03
71GO:1902074: response to salt2.87E-03
72GO:1900056: negative regulation of leaf senescence2.87E-03
73GO:0050829: defense response to Gram-negative bacterium2.87E-03
74GO:0009817: defense response to fungus, incompatible interaction3.31E-03
75GO:0006605: protein targeting3.32E-03
76GO:0016559: peroxisome fission3.32E-03
77GO:0010928: regulation of auxin mediated signaling pathway3.32E-03
78GO:0009407: toxin catabolic process3.64E-03
79GO:0007166: cell surface receptor signaling pathway3.66E-03
80GO:0009873: ethylene-activated signaling pathway3.68E-03
81GO:0010120: camalexin biosynthetic process3.80E-03
82GO:0009808: lignin metabolic process3.80E-03
83GO:0009699: phenylpropanoid biosynthetic process3.80E-03
84GO:0009056: catabolic process4.30E-03
85GO:0009821: alkaloid biosynthetic process4.30E-03
86GO:0008202: steroid metabolic process4.82E-03
87GO:0010449: root meristem growth4.82E-03
88GO:0042742: defense response to bacterium4.87E-03
89GO:0009688: abscisic acid biosynthetic process5.36E-03
90GO:0043069: negative regulation of programmed cell death5.36E-03
91GO:0006896: Golgi to vacuole transport5.36E-03
92GO:0055062: phosphate ion homeostasis5.36E-03
93GO:0030148: sphingolipid biosynthetic process5.92E-03
94GO:0006855: drug transmembrane transport6.28E-03
95GO:0000266: mitochondrial fission6.51E-03
96GO:0006812: cation transport6.76E-03
97GO:0042538: hyperosmotic salinity response6.76E-03
98GO:0006626: protein targeting to mitochondrion7.11E-03
99GO:2000028: regulation of photoperiodism, flowering7.11E-03
100GO:0055046: microgametogenesis7.11E-03
101GO:0009718: anthocyanin-containing compound biosynthetic process7.11E-03
102GO:0009809: lignin biosynthetic process7.26E-03
103GO:0046777: protein autophosphorylation7.70E-03
104GO:0016310: phosphorylation7.72E-03
105GO:0010540: basipetal auxin transport7.73E-03
106GO:0070588: calcium ion transmembrane transport8.37E-03
107GO:0009969: xyloglucan biosynthetic process8.37E-03
108GO:0009225: nucleotide-sugar metabolic process8.37E-03
109GO:0005992: trehalose biosynthetic process9.71E-03
110GO:0016998: cell wall macromolecule catabolic process1.11E-02
111GO:0071456: cellular response to hypoxia1.19E-02
112GO:0019748: secondary metabolic process1.19E-02
113GO:0006012: galactose metabolic process1.26E-02
114GO:0009561: megagametogenesis1.34E-02
115GO:0006817: phosphate ion transport1.34E-02
116GO:0009651: response to salt stress1.41E-02
117GO:0042147: retrograde transport, endosome to Golgi1.42E-02
118GO:0010087: phloem or xylem histogenesis1.50E-02
119GO:0042391: regulation of membrane potential1.50E-02
120GO:0006885: regulation of pH1.58E-02
121GO:0006814: sodium ion transport1.66E-02
122GO:0042752: regulation of circadian rhythm1.66E-02
123GO:0048825: cotyledon development1.75E-02
124GO:0009851: auxin biosynthetic process1.75E-02
125GO:0009734: auxin-activated signaling pathway1.79E-02
126GO:0006891: intra-Golgi vesicle-mediated transport1.83E-02
127GO:0002229: defense response to oomycetes1.83E-02
128GO:0009615: response to virus2.38E-02
129GO:0009611: response to wounding2.46E-02
130GO:0009607: response to biotic stimulus2.48E-02
131GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.48E-02
132GO:0009627: systemic acquired resistance2.58E-02
133GO:0006950: response to stress2.67E-02
134GO:0006888: ER to Golgi vesicle-mediated transport2.67E-02
135GO:0030244: cellulose biosynthetic process2.88E-02
136GO:0008219: cell death2.88E-02
137GO:0009832: plant-type cell wall biogenesis2.98E-02
138GO:0048767: root hair elongation2.98E-02
139GO:0009631: cold acclimation3.19E-02
140GO:0048527: lateral root development3.19E-02
141GO:0010119: regulation of stomatal movement3.19E-02
142GO:0048366: leaf development3.27E-02
143GO:0046686: response to cadmium ion3.33E-02
144GO:0045087: innate immune response3.40E-02
145GO:0016051: carbohydrate biosynthetic process3.40E-02
146GO:0009867: jasmonic acid mediated signaling pathway3.40E-02
147GO:0006952: defense response3.63E-02
148GO:0009926: auxin polar transport4.08E-02
149GO:0045892: negative regulation of transcription, DNA-templated4.18E-02
150GO:0006869: lipid transport4.51E-02
151GO:0000165: MAPK cascade4.67E-02
152GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.67E-02
153GO:0016042: lipid catabolic process4.91E-02
RankGO TermAdjusted P value
1GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
2GO:0051670: inulinase activity0.00E+00
3GO:0016301: kinase activity1.51E-05
4GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.45E-05
5GO:0005496: steroid binding4.22E-05
6GO:0004747: ribokinase activity8.69E-05
7GO:0008865: fructokinase activity1.48E-04
8GO:0031219: levanase activity1.86E-04
9GO:0031127: alpha-(1,2)-fucosyltransferase activity1.86E-04
10GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity1.86E-04
11GO:0051669: fructan beta-fructosidase activity1.86E-04
12GO:0004657: proline dehydrogenase activity1.86E-04
13GO:0008171: O-methyltransferase activity3.16E-04
14GO:0004061: arylformamidase activity4.19E-04
15GO:0042937: tripeptide transporter activity4.19E-04
16GO:0010331: gibberellin binding4.19E-04
17GO:0050736: O-malonyltransferase activity4.19E-04
18GO:0045140: inositol phosphoceramide synthase activity4.19E-04
19GO:0004364: glutathione transferase activity6.55E-04
20GO:0004751: ribose-5-phosphate isomerase activity6.84E-04
21GO:0004383: guanylate cyclase activity6.84E-04
22GO:0016595: glutamate binding6.84E-04
23GO:0042409: caffeoyl-CoA O-methyltransferase activity6.84E-04
24GO:0050660: flavin adenine dinucleotide binding1.24E-03
25GO:0004031: aldehyde oxidase activity1.29E-03
26GO:0050302: indole-3-acetaldehyde oxidase activity1.29E-03
27GO:0009916: alternative oxidase activity1.29E-03
28GO:0015368: calcium:cation antiporter activity1.29E-03
29GO:0050373: UDP-arabinose 4-epimerase activity1.29E-03
30GO:0042936: dipeptide transporter activity1.29E-03
31GO:0015369: calcium:proton antiporter activity1.29E-03
32GO:0010328: auxin influx transmembrane transporter activity1.29E-03
33GO:0004674: protein serine/threonine kinase activity1.45E-03
34GO:0010294: abscisic acid glucosyltransferase activity1.65E-03
35GO:0004040: amidase activity1.65E-03
36GO:0004709: MAP kinase kinase kinase activity2.03E-03
37GO:0047714: galactolipase activity2.03E-03
38GO:0005524: ATP binding2.14E-03
39GO:0019900: kinase binding2.43E-03
40GO:0003978: UDP-glucose 4-epimerase activity2.43E-03
41GO:0051213: dioxygenase activity2.54E-03
42GO:0009055: electron carrier activity2.77E-03
43GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity2.87E-03
44GO:0015491: cation:cation antiporter activity3.32E-03
45GO:0015238: drug transmembrane transporter activity3.47E-03
46GO:0008142: oxysterol binding3.80E-03
47GO:0008970: phosphatidylcholine 1-acylhydrolase activity3.80E-03
48GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.19E-03
49GO:0008417: fucosyltransferase activity4.30E-03
50GO:0071949: FAD binding4.30E-03
51GO:0030955: potassium ion binding4.82E-03
52GO:0016844: strictosidine synthase activity4.82E-03
53GO:0004743: pyruvate kinase activity4.82E-03
54GO:0008559: xenobiotic-transporting ATPase activity5.92E-03
55GO:0047372: acylglycerol lipase activity5.92E-03
56GO:0005388: calcium-transporting ATPase activity7.11E-03
57GO:0010329: auxin efflux transmembrane transporter activity7.11E-03
58GO:0004970: ionotropic glutamate receptor activity8.37E-03
59GO:0030552: cAMP binding8.37E-03
60GO:0030553: cGMP binding8.37E-03
61GO:0005217: intracellular ligand-gated ion channel activity8.37E-03
62GO:0004725: protein tyrosine phosphatase activity9.03E-03
63GO:0080043: quercetin 3-O-glucosyltransferase activity9.44E-03
64GO:0080044: quercetin 7-O-glucosyltransferase activity9.44E-03
65GO:0008134: transcription factor binding9.71E-03
66GO:0001046: core promoter sequence-specific DNA binding9.71E-03
67GO:0005216: ion channel activity1.04E-02
68GO:0005516: calmodulin binding1.11E-02
69GO:0005451: monovalent cation:proton antiporter activity1.50E-02
70GO:0005249: voltage-gated potassium channel activity1.50E-02
71GO:0030551: cyclic nucleotide binding1.50E-02
72GO:0015299: solute:proton antiporter activity1.66E-02
73GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.67E-02
74GO:0015297: antiporter activity1.71E-02
75GO:0019901: protein kinase binding1.75E-02
76GO:0004872: receptor activity1.75E-02
77GO:0016787: hydrolase activity1.82E-02
78GO:0008194: UDP-glycosyltransferase activity2.01E-02
79GO:0015385: sodium:proton antiporter activity2.01E-02
80GO:0016597: amino acid binding2.29E-02
81GO:0009931: calcium-dependent protein serine/threonine kinase activity2.58E-02
82GO:0004683: calmodulin-dependent protein kinase activity2.67E-02
83GO:0004806: triglyceride lipase activity2.67E-02
84GO:0030247: polysaccharide binding2.67E-02
85GO:0008168: methyltransferase activity2.68E-02
86GO:0030145: manganese ion binding3.19E-02
87GO:0000149: SNARE binding3.63E-02
88GO:0052689: carboxylic ester hydrolase activity3.80E-02
89GO:0016757: transferase activity, transferring glycosyl groups3.95E-02
90GO:0005484: SNAP receptor activity4.08E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding4.31E-02
92GO:0005198: structural molecule activity4.43E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.23E-06
2GO:0016021: integral component of membrane6.27E-05
3GO:0005770: late endosome1.13E-04
4GO:0005829: cytosol4.67E-04
5GO:0031461: cullin-RING ubiquitin ligase complex9.77E-04
6GO:0030140: trans-Golgi network transport vesicle2.03E-03
7GO:0032580: Golgi cisterna membrane2.14E-03
8GO:0000794: condensed nuclear chromosome2.87E-03
9GO:0005794: Golgi apparatus3.28E-03
10GO:0012507: ER to Golgi transport vesicle membrane3.32E-03
11GO:0000325: plant-type vacuole3.82E-03
12GO:0031902: late endosome membrane4.97E-03
13GO:0005783: endoplasmic reticulum9.25E-03
14GO:0070469: respiratory chain1.04E-02
15GO:0005741: mitochondrial outer membrane1.11E-02
16GO:0043231: intracellular membrane-bounded organelle1.32E-02
17GO:0005618: cell wall1.94E-02
18GO:0071944: cell periphery2.01E-02
19GO:0005778: peroxisomal membrane2.19E-02
20GO:0000151: ubiquitin ligase complex2.88E-02
21GO:0005789: endoplasmic reticulum membrane3.24E-02
22GO:0005819: spindle3.63E-02
23GO:0031201: SNARE complex3.85E-02
24GO:0005802: trans-Golgi network4.30E-02
25GO:0031966: mitochondrial membrane4.79E-02
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Gene type



Gene DE type