co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
2	GO:0072321: chaperone-mediated protein transport	0.00E+00
3	GO:0071433: cell wall repair	0.00E+00
4	GO:0043462: regulation of ATPase activity	0.00E+00
5	GO:0071731: response to nitric oxide	0.00E+00
6	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
7	GO:0045041: protein import into mitochondrial intermembrane space	8.18E-08
8	GO:0042254: ribosome biogenesis	7.91E-07
9	GO:0006458: 'de novo' protein folding	5.84E-06
10	GO:0042026: protein refolding	5.84E-06
11	GO:0010162: seed dormancy process	2.67E-05
12	GO:0031120: snRNA pseudouridine synthesis	3.50E-05
13	GO:0031118: rRNA pseudouridine synthesis	3.50E-05
14	GO:0048448: stamen morphogenesis	3.50E-05
15	GO:0010450: inflorescence meristem growth	3.50E-05
16	GO:0000494: box C/D snoRNA 3'-end processing	3.50E-05
17	GO:1990258: histone glutamine methylation	3.50E-05
18	GO:0009408: response to heat	6.78E-05
19	GO:0009944: polarity specification of adaxial/abaxial axis	7.44E-05
20	GO:0000027: ribosomal large subunit assembly	7.44E-05
21	GO:0048833: specification of floral organ number	8.78E-05
22	GO:0061077: chaperone-mediated protein folding	9.30E-05
23	GO:0007005: mitochondrion organization	1.03E-04
24	GO:0009294: DNA mediated transformation	1.13E-04
25	GO:0006954: inflammatory response	1.52E-04
26	GO:1902626: assembly of large subunit precursor of preribosome	1.52E-04
27	GO:0045039: protein import into mitochondrial inner membrane	1.52E-04
28	GO:0046686: response to cadmium ion	1.87E-04
29	GO:0051131: chaperone-mediated protein complex assembly	2.25E-04
30	GO:0006457: protein folding	2.86E-04
31	GO:0000956: nuclear-transcribed mRNA catabolic process	3.05E-04
32	GO:0031365: N-terminal protein amino acid modification	3.89E-04
33	GO:0031167: rRNA methylation	3.89E-04
34	GO:0042255: ribosome assembly	7.68E-04
35	GO:0006364: rRNA processing	8.23E-04
36	GO:0009880: embryonic pattern specification	8.71E-04
37	GO:0001510: RNA methylation	8.71E-04
38	GO:0006189: 'de novo' IMP biosynthetic process	9.78E-04
39	GO:0090332: stomatal closure	1.09E-03
40	GO:0009735: response to cytokinin	1.26E-03
41	GO:0016485: protein processing	1.32E-03
42	GO:0006626: protein targeting to mitochondrion	1.57E-03
43	GO:0048467: gynoecium development	1.70E-03
44	GO:0046688: response to copper ion	1.84E-03
45	GO:0030150: protein import into mitochondrial matrix	2.12E-03
46	GO:0010187: negative regulation of seed germination	2.12E-03
47	GO:0006825: copper ion transport	2.26E-03
48	GO:0098542: defense response to other organism	2.41E-03
49	GO:0008033: tRNA processing	3.20E-03
50	GO:0006635: fatty acid beta-oxidation	3.88E-03
51	GO:0032502: developmental process	4.06E-03
52	GO:0010286: heat acclimation	4.60E-03
53	GO:0009615: response to virus	4.99E-03
54	GO:0009911: positive regulation of flower development	4.99E-03
55	GO:0048573: photoperiodism, flowering	5.58E-03
56	GO:0016049: cell growth	5.78E-03
57	GO:0048527: lateral root development	6.61E-03
58	GO:0006412: translation	6.93E-03
59	GO:0000154: rRNA modification	9.12E-03
60	GO:0009965: leaf morphogenesis	9.12E-03
61	GO:0009555: pollen development	9.64E-03
62	GO:0016569: covalent chromatin modification	1.27E-02
63	GO:0000398: mRNA splicing, via spliceosome	1.47E-02
64	GO:0006351: transcription, DNA-templated	1.48E-02
65	GO:0009651: response to salt stress	1.59E-02
66	GO:0042742: defense response to bacterium	1.96E-02
67	GO:0009451: RNA modification	1.99E-02
68	GO:0009617: response to bacterium	2.22E-02
69	GO:0015031: protein transport	2.49E-02
70	GO:0009723: response to ethylene	2.96E-02
71	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
72	GO:0048364: root development	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0051082: unfolded protein binding	5.27E-08
2	GO:0001054: RNA polymerase I activity	2.29E-07
3	GO:0030515: snoRNA binding	8.12E-06
4	GO:0001055: RNA polymerase II activity	2.19E-05
5	GO:0003723: RNA binding	3.13E-05
6	GO:0044183: protein binding involved in protein folding	3.20E-05
7	GO:1990259: histone-glutamine methyltransferase activity	3.50E-05
8	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	3.50E-05
9	GO:0001056: RNA polymerase III activity	3.77E-05
10	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.77E-05
11	GO:0004407: histone deacetylase activity	7.44E-05
12	GO:0008649: rRNA methyltransferase activity	1.52E-04
13	GO:0016531: copper chaperone activity	1.52E-04
14	GO:0002020: protease binding	3.89E-04
15	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	4.78E-04
16	GO:0008235: metalloexopeptidase activity	6.66E-04
17	GO:0004177: aminopeptidase activity	1.32E-03
18	GO:0031072: heat shock protein binding	1.57E-03
19	GO:0009982: pseudouridine synthase activity	1.57E-03
20	GO:0003735: structural constituent of ribosome	1.61E-03
21	GO:0005507: copper ion binding	2.19E-03
22	GO:0004721: phosphoprotein phosphatase activity	5.58E-03
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.99E-03
24	GO:0050897: cobalt ion binding	6.61E-03
25	GO:0003746: translation elongation factor activity	7.05E-03
26	GO:0005524: ATP binding	1.37E-02
27	GO:0008026: ATP-dependent helicase activity	1.38E-02
28	GO:0008565: protein transporter activity	1.77E-02
29	GO:0003924: GTPase activity	4.11E-02
30	GO:0004519: endonuclease activity	4.36E-02
31	GO:0046872: metal ion binding	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005730: nucleolus	9.81E-15
3	GO:0005736: DNA-directed RNA polymerase I complex	9.19E-08
4	GO:0031428: box C/D snoRNP complex	4.00E-06
5	GO:0005759: mitochondrial matrix	7.11E-06
6	GO:0005774: vacuolar membrane	1.99E-05
7	GO:0005666: DNA-directed RNA polymerase III complex	2.19E-05
8	GO:0005739: mitochondrion	2.54E-05
9	GO:0000418: DNA-directed RNA polymerase IV complex	2.67E-05
10	GO:0032040: small-subunit processome	3.77E-05
11	GO:0005665: DNA-directed RNA polymerase II, core complex	3.77E-05
12	GO:0005829: cytosol	5.78E-05
13	GO:0005758: mitochondrial intermembrane space	7.44E-05
14	GO:0005618: cell wall	2.07E-04
15	GO:0031429: box H/ACA snoRNP complex	2.25E-04
16	GO:1990726: Lsm1-7-Pat1 complex	2.25E-04
17	GO:0005688: U6 snRNP	7.68E-04
18	GO:0046540: U4/U6 x U5 tri-snRNP complex	8.71E-04
19	GO:0005742: mitochondrial outer membrane translocase complex	8.71E-04
20	GO:0005747: mitochondrial respiratory chain complex I	9.93E-04
21	GO:0015030: Cajal body	1.09E-03
22	GO:0000419: DNA-directed RNA polymerase V complex	1.97E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.87E-03
24	GO:0005840: ribosome	3.63E-03
25	GO:0022625: cytosolic large ribosomal subunit	3.88E-03
26	GO:0005743: mitochondrial inner membrane	5.06E-03
27	GO:0015934: large ribosomal subunit	6.61E-03
28	GO:0009506: plasmodesma	8.40E-03
29	GO:0022626: cytosolic ribosome	9.22E-03
30	GO:0005681: spliceosomal complex	1.17E-02
31	GO:0005732: small nucleolar ribonucleoprotein complex	1.41E-02
32	GO:0005773: vacuole	2.82E-02