co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0034337: RNA folding	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0045014: negative regulation of transcription by glucose	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
10	GO:0015979: photosynthesis	2.95E-11
11	GO:0046620: regulation of organ growth	5.22E-08
12	GO:0042254: ribosome biogenesis	5.33E-07
13	GO:0006412: translation	1.16E-06
14	GO:0010207: photosystem II assembly	1.17E-06
15	GO:0010206: photosystem II repair	1.12E-05
16	GO:0009926: auxin polar transport	1.20E-05
17	GO:0009733: response to auxin	1.69E-05
18	GO:0051513: regulation of monopolar cell growth	2.55E-05
19	GO:0009735: response to cytokinin	2.62E-05
20	GO:0010027: thylakoid membrane organization	3.88E-05
21	GO:0015995: chlorophyll biosynthetic process	5.34E-05
22	GO:0009772: photosynthetic electron transport in photosystem II	1.93E-04
23	GO:0009958: positive gravitropism	2.22E-04
24	GO:0043489: RNA stabilization	2.60E-04
25	GO:0043266: regulation of potassium ion transport	2.60E-04
26	GO:0000481: maturation of 5S rRNA	2.60E-04
27	GO:0042759: long-chain fatty acid biosynthetic process	2.60E-04
28	GO:0042371: vitamin K biosynthetic process	2.60E-04
29	GO:2000021: regulation of ion homeostasis	2.60E-04
30	GO:0032544: plastid translation	3.02E-04
31	GO:0009734: auxin-activated signaling pathway	5.37E-04
32	GO:1900871: chloroplast mRNA modification	5.74E-04
33	GO:0010541: acropetal auxin transport	5.74E-04
34	GO:0001736: establishment of planar polarity	5.74E-04
35	GO:0010024: phytochromobilin biosynthetic process	5.74E-04
36	GO:0009773: photosynthetic electron transport in photosystem I	5.84E-04
37	GO:0016024: CDP-diacylglycerol biosynthetic process	6.67E-04
38	GO:0006006: glucose metabolic process	7.57E-04
39	GO:0006788: heme oxidation	9.31E-04
40	GO:0010160: formation of animal organ boundary	9.31E-04
41	GO:0090391: granum assembly	9.31E-04
42	GO:0006518: peptide metabolic process	9.31E-04
43	GO:0080055: low-affinity nitrate transport	9.31E-04
44	GO:0045493: xylan catabolic process	9.31E-04
45	GO:0045490: pectin catabolic process	1.06E-03
46	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.33E-03
47	GO:0009650: UV protection	1.33E-03
48	GO:1901332: negative regulation of lateral root development	1.33E-03
49	GO:0071484: cellular response to light intensity	1.33E-03
50	GO:0080170: hydrogen peroxide transmembrane transport	1.33E-03
51	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.33E-03
52	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.33E-03
53	GO:0030104: water homeostasis	1.78E-03
54	GO:0022622: root system development	1.78E-03
55	GO:0009306: protein secretion	1.82E-03
56	GO:0048443: stamen development	1.82E-03
57	GO:0042335: cuticle development	2.13E-03
58	GO:0034220: ion transmembrane transport	2.13E-03
59	GO:0010236: plastoquinone biosynthetic process	2.27E-03
60	GO:0009913: epidermal cell differentiation	2.80E-03
61	GO:0006655: phosphatidylglycerol biosynthetic process	2.80E-03
62	GO:0060918: auxin transport	2.80E-03
63	GO:0042549: photosystem II stabilization	2.80E-03
64	GO:1901259: chloroplast rRNA processing	3.36E-03
65	GO:0042372: phylloquinone biosynthetic process	3.36E-03
66	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.36E-03
67	GO:0017148: negative regulation of translation	3.36E-03
68	GO:1900057: positive regulation of leaf senescence	3.97E-03
69	GO:0032880: regulation of protein localization	3.97E-03
70	GO:0010196: nonphotochemical quenching	3.97E-03
71	GO:0030091: protein repair	4.60E-03
72	GO:0006605: protein targeting	4.60E-03
73	GO:0032508: DNA duplex unwinding	4.60E-03
74	GO:0048564: photosystem I assembly	4.60E-03
75	GO:0010311: lateral root formation	5.59E-03
76	GO:0048589: developmental growth	5.98E-03
77	GO:0009051: pentose-phosphate shunt, oxidative branch	5.98E-03
78	GO:0009245: lipid A biosynthetic process	5.98E-03
79	GO:0048527: lateral root development	6.15E-03
80	GO:0009409: response to cold	6.22E-03
81	GO:0010205: photoinhibition	6.71E-03
82	GO:0006535: cysteine biosynthetic process from serine	7.47E-03
83	GO:0048829: root cap development	7.47E-03
84	GO:0030001: metal ion transport	7.69E-03
85	GO:1903507: negative regulation of nucleic acid-templated transcription	8.27E-03
86	GO:0018119: peptidyl-cysteine S-nitrosylation	8.27E-03
87	GO:0048765: root hair cell differentiation	8.27E-03
88	GO:0010015: root morphogenesis	8.27E-03
89	GO:0010152: pollen maturation	9.09E-03
90	GO:0008361: regulation of cell size	9.09E-03
91	GO:0009658: chloroplast organization	9.92E-03
92	GO:0009718: anthocyanin-containing compound biosynthetic process	9.94E-03
93	GO:0010588: cotyledon vascular tissue pattern formation	9.94E-03
94	GO:2000012: regulation of auxin polar transport	9.94E-03
95	GO:0019253: reductive pentose-phosphate cycle	1.08E-02
96	GO:0010540: basipetal auxin transport	1.08E-02
97	GO:0010143: cutin biosynthetic process	1.08E-02
98	GO:0009664: plant-type cell wall organization	1.09E-02
99	GO:0010030: positive regulation of seed germination	1.17E-02
100	GO:0009416: response to light stimulus	1.24E-02
101	GO:0010025: wax biosynthetic process	1.27E-02
102	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-02
103	GO:0006833: water transport	1.27E-02
104	GO:0019344: cysteine biosynthetic process	1.36E-02
105	GO:0000027: ribosomal large subunit assembly	1.36E-02
106	GO:0031408: oxylipin biosynthetic process	1.56E-02
107	GO:0003333: amino acid transmembrane transport	1.56E-02
108	GO:0048511: rhythmic process	1.56E-02
109	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.67E-02
110	GO:0009624: response to nematode	1.68E-02
111	GO:0009411: response to UV	1.77E-02
112	GO:0071369: cellular response to ethylene stimulus	1.77E-02
113	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.77E-02
114	GO:0008284: positive regulation of cell proliferation	1.99E-02
115	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.99E-02
116	GO:0016042: lipid catabolic process	2.06E-02
117	GO:0080022: primary root development	2.11E-02
118	GO:0000413: protein peptidyl-prolyl isomerization	2.11E-02
119	GO:0010087: phloem or xylem histogenesis	2.11E-02
120	GO:0042631: cellular response to water deprivation	2.11E-02
121	GO:0010305: leaf vascular tissue pattern formation	2.22E-02
122	GO:0015986: ATP synthesis coupled proton transport	2.34E-02
123	GO:0042752: regulation of circadian rhythm	2.34E-02
124	GO:0009790: embryo development	2.46E-02
125	GO:0048825: cotyledon development	2.46E-02
126	GO:0000302: response to reactive oxygen species	2.58E-02
127	GO:0030163: protein catabolic process	2.83E-02
128	GO:0007623: circadian rhythm	2.90E-02
129	GO:0009639: response to red or far red light	2.96E-02
130	GO:0009828: plant-type cell wall loosening	2.96E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	2.96E-02
132	GO:0042742: defense response to bacterium	3.52E-02
133	GO:0009627: systemic acquired resistance	3.63E-02
134	GO:0010411: xyloglucan metabolic process	3.77E-02
135	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
136	GO:0010218: response to far red light	4.34E-02
137	GO:0009631: cold acclimation	4.49E-02
138	GO:0006865: amino acid transport	4.64E-02
139	GO:0045087: innate immune response	4.79E-02
140	GO:0016051: carbohydrate biosynthetic process	4.79E-02
141	GO:0009637: response to blue light	4.79E-02
142	GO:0034599: cellular response to oxidative stress	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0005528: FK506 binding	6.22E-10
7	GO:0003735: structural constituent of ribosome	1.56E-08
8	GO:0019843: rRNA binding	2.40E-08
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.62E-08
10	GO:0016851: magnesium chelatase activity	1.00E-07
11	GO:0043023: ribosomal large subunit binding	2.55E-05
12	GO:0010011: auxin binding	4.61E-05
13	GO:0030570: pectate lyase activity	1.41E-04
14	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.74E-04
15	GO:0016829: lyase activity	7.39E-04
16	GO:0004751: ribose-5-phosphate isomerase activity	9.31E-04
17	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.31E-04
18	GO:0080054: low-affinity nitrate transmembrane transporter activity	9.31E-04
19	GO:0008097: 5S rRNA binding	1.33E-03
20	GO:0009044: xylan 1,4-beta-xylosidase activity	1.78E-03
21	GO:0004392: heme oxygenase (decyclizing) activity	1.78E-03
22	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.78E-03
23	GO:0046556: alpha-L-arabinofuranosidase activity	1.78E-03
24	GO:0004659: prenyltransferase activity	1.78E-03
25	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.78E-03
26	GO:0010328: auxin influx transmembrane transporter activity	1.78E-03
27	GO:0052793: pectin acetylesterase activity	1.78E-03
28	GO:0016788: hydrolase activity, acting on ester bonds	2.12E-03
29	GO:0004130: cytochrome-c peroxidase activity	2.80E-03
30	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.80E-03
31	GO:0031177: phosphopantetheine binding	2.80E-03
32	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.80E-03
33	GO:0052689: carboxylic ester hydrolase activity	3.33E-03
34	GO:0004017: adenylate kinase activity	3.36E-03
35	GO:0000035: acyl binding	3.36E-03
36	GO:0004124: cysteine synthase activity	3.36E-03
37	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.36E-03
38	GO:0015250: water channel activity	4.08E-03
39	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.60E-03
40	GO:0008236: serine-type peptidase activity	5.06E-03
41	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.27E-03
42	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.32E-03
43	GO:0015020: glucuronosyltransferase activity	7.47E-03
44	GO:0050661: NADP binding	7.69E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	9.94E-03
46	GO:0031072: heat shock protein binding	9.94E-03
47	GO:0008266: poly(U) RNA binding	1.08E-02
48	GO:0008083: growth factor activity	1.08E-02
49	GO:0003714: transcription corepressor activity	1.36E-02
50	GO:0004707: MAP kinase activity	1.56E-02
51	GO:0016746: transferase activity, transferring acyl groups	1.73E-02
52	GO:0016491: oxidoreductase activity	1.81E-02
53	GO:0003756: protein disulfide isomerase activity	1.88E-02
54	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.22E-02
55	GO:0008080: N-acetyltransferase activity	2.22E-02
56	GO:0004252: serine-type endopeptidase activity	2.33E-02
57	GO:0010181: FMN binding	2.34E-02
58	GO:0016791: phosphatase activity	2.96E-02
59	GO:0005515: protein binding	3.06E-02
60	GO:0005509: calcium ion binding	3.13E-02
61	GO:0016168: chlorophyll binding	3.49E-02
62	GO:0008375: acetylglucosaminyltransferase activity	3.63E-02
63	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.69E-02
64	GO:0005096: GTPase activator activity	4.20E-02
65	GO:0004222: metalloendopeptidase activity	4.34E-02
66	GO:0003746: translation elongation factor activity	4.79E-02
67	GO:0003993: acid phosphatase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	5.17E-34
5	GO:0009570: chloroplast stroma	3.40E-29
6	GO:0009543: chloroplast thylakoid lumen	3.90E-24
7	GO:0009579: thylakoid	6.52E-24
8	GO:0009535: chloroplast thylakoid membrane	4.71E-22
9	GO:0009534: chloroplast thylakoid	4.55E-21
10	GO:0009941: chloroplast envelope	4.08E-20
11	GO:0031977: thylakoid lumen	8.18E-17
12	GO:0005840: ribosome	2.34E-09
13	GO:0010007: magnesium chelatase complex	2.06E-08
14	GO:0030095: chloroplast photosystem II	1.17E-06
15	GO:0009654: photosystem II oxygen evolving complex	9.40E-05
16	GO:0009538: photosystem I reaction center	2.45E-04
17	GO:0009515: granal stacked thylakoid	2.60E-04
18	GO:0043674: columella	2.60E-04
19	GO:0019898: extrinsic component of membrane	2.70E-04
20	GO:0016020: membrane	3.47E-04
21	GO:0009295: nucleoid	4.15E-04
22	GO:0030093: chloroplast photosystem I	5.74E-04
23	GO:0032040: small-subunit processome	6.67E-04
24	GO:0009508: plastid chromosome	7.57E-04
25	GO:0009509: chromoplast	9.31E-04
26	GO:0009531: secondary cell wall	1.33E-03
27	GO:0009522: photosystem I	2.47E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.80E-03
29	GO:0042807: central vacuole	3.97E-03
30	GO:0009986: cell surface	3.97E-03
31	GO:0009533: chloroplast stromal thylakoid	3.97E-03
32	GO:0042644: chloroplast nucleoid	5.98E-03
33	GO:0008180: COP9 signalosome	5.98E-03
34	GO:0055028: cortical microtubule	7.47E-03
35	GO:0000312: plastid small ribosomal subunit	1.08E-02
36	GO:0031969: chloroplast membrane	1.30E-02
37	GO:0015935: small ribosomal subunit	1.56E-02
38	GO:0009505: plant-type cell wall	1.67E-02
39	GO:0010287: plastoglobule	1.99E-02
40	GO:0009523: photosystem II	2.46E-02
41	GO:0009705: plant-type vacuole membrane	2.90E-02
42	GO:0005768: endosome	3.02E-02
43	GO:0010319: stromule	3.09E-02
44	GO:0030529: intracellular ribonucleoprotein complex	3.35E-02
45	GO:0019005: SCF ubiquitin ligase complex	4.05E-02
46	GO:0009536: plastid	4.72E-02
47	GO:0005618: cell wall	4.74E-02