Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0015979: photosynthesis4.77E-12
5GO:0015995: chlorophyll biosynthetic process8.06E-12
6GO:0051513: regulation of monopolar cell growth3.77E-06
7GO:0009735: response to cytokinin2.04E-05
8GO:0010206: photosystem II repair7.31E-05
9GO:0006783: heme biosynthetic process7.31E-05
10GO:0000476: maturation of 4.5S rRNA8.78E-05
11GO:0000967: rRNA 5'-end processing8.78E-05
12GO:0015671: oxygen transport8.78E-05
13GO:0043266: regulation of potassium ion transport8.78E-05
14GO:2000021: regulation of ion homeostasis8.78E-05
15GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.78E-05
16GO:0006782: protoporphyrinogen IX biosynthetic process1.06E-04
17GO:0016024: CDP-diacylglycerol biosynthetic process1.46E-04
18GO:0010541: acropetal auxin transport2.08E-04
19GO:0034470: ncRNA processing2.08E-04
20GO:0045493: xylan catabolic process3.48E-04
21GO:0010160: formation of animal organ boundary3.48E-04
22GO:0048443: stamen development4.27E-04
23GO:0009647: skotomorphogenesis5.01E-04
24GO:0010306: rhamnogalacturonan II biosynthetic process5.01E-04
25GO:0080170: hydrogen peroxide transmembrane transport5.01E-04
26GO:0043481: anthocyanin accumulation in tissues in response to UV light5.01E-04
27GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity5.01E-04
28GO:0009958: positive gravitropism5.37E-04
29GO:0030104: water homeostasis6.66E-04
30GO:0022622: root system development6.66E-04
31GO:0009734: auxin-activated signaling pathway8.73E-04
32GO:0009913: epidermal cell differentiation1.03E-03
33GO:0006655: phosphatidylglycerol biosynthetic process1.03E-03
34GO:0060918: auxin transport1.03E-03
35GO:0048527: lateral root development1.39E-03
36GO:0032880: regulation of protein localization1.44E-03
37GO:0009640: photomorphogenesis1.94E-03
38GO:0048589: developmental growth2.14E-03
39GO:0019432: triglyceride biosynthetic process2.14E-03
40GO:0010205: photoinhibition2.39E-03
41GO:0009664: plant-type cell wall organization2.43E-03
42GO:1903507: negative regulation of nucleic acid-templated transcription2.93E-03
43GO:0018119: peptidyl-cysteine S-nitrosylation2.93E-03
44GO:0010015: root morphogenesis2.93E-03
45GO:0009773: photosynthetic electron transport in photosystem I2.93E-03
46GO:0010152: pollen maturation3.21E-03
47GO:0008361: regulation of cell size3.21E-03
48GO:2000012: regulation of auxin polar transport3.50E-03
49GO:0010207: photosystem II assembly3.80E-03
50GO:0010540: basipetal auxin transport3.80E-03
51GO:0010143: cutin biosynthetic process3.80E-03
52GO:0090351: seedling development4.10E-03
53GO:0010030: positive regulation of seed germination4.10E-03
54GO:0009733: response to auxin4.27E-03
55GO:0007017: microtubule-based process5.07E-03
56GO:0048511: rhythmic process5.42E-03
57GO:2000022: regulation of jasmonic acid mediated signaling pathway5.76E-03
58GO:0040008: regulation of growth6.06E-03
59GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.12E-03
60GO:0007623: circadian rhythm6.35E-03
61GO:0008284: positive regulation of cell proliferation6.86E-03
62GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.86E-03
63GO:0034220: ion transmembrane transport7.24E-03
64GO:0042631: cellular response to water deprivation7.24E-03
65GO:0048868: pollen tube development7.62E-03
66GO:0009741: response to brassinosteroid7.62E-03
67GO:0042752: regulation of circadian rhythm8.02E-03
68GO:0048825: cotyledon development8.42E-03
69GO:0010193: response to ozone8.83E-03
70GO:0000302: response to reactive oxygen species8.83E-03
71GO:0030163: protein catabolic process9.67E-03
72GO:0007275: multicellular organism development9.98E-03
73GO:0009639: response to red or far red light1.01E-02
74GO:0009828: plant-type cell wall loosening1.01E-02
75GO:0010027: thylakoid membrane organization1.14E-02
76GO:0080167: response to karrikin1.22E-02
77GO:0010411: xyloglucan metabolic process1.28E-02
78GO:0000160: phosphorelay signal transduction system1.43E-02
79GO:0045454: cell redox homeostasis1.46E-02
80GO:0010218: response to far red light1.48E-02
81GO:0071555: cell wall organization1.58E-02
82GO:0009637: response to blue light1.63E-02
83GO:0034599: cellular response to oxidative stress1.68E-02
84GO:0030001: metal ion transport1.79E-02
85GO:0006631: fatty acid metabolic process1.84E-02
86GO:0009926: auxin polar transport1.95E-02
87GO:0008152: metabolic process1.99E-02
88GO:0031347: regulation of defense response2.24E-02
89GO:0042538: hyperosmotic salinity response2.29E-02
90GO:0009736: cytokinin-activated signaling pathway2.41E-02
91GO:0010224: response to UV-B2.47E-02
92GO:0009611: response to wounding3.28E-02
93GO:0009845: seed germination3.85E-02
94GO:0042744: hydrogen peroxide catabolic process3.99E-02
95GO:0045490: pectin catabolic process4.58E-02
96GO:0009739: response to gibberellin4.95E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
6GO:0016851: magnesium chelatase activity3.77E-06
7GO:0005344: oxygen transporter activity8.78E-05
8GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.78E-05
9GO:0016630: protochlorophyllide reductase activity2.08E-04
10GO:0005528: FK506 binding2.70E-04
11GO:0009044: xylan 1,4-beta-xylosidase activity6.66E-04
12GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity6.66E-04
13GO:0046556: alpha-L-arabinofuranosidase activity6.66E-04
14GO:0010011: auxin binding6.66E-04
15GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.03E-03
16GO:0004130: cytochrome-c peroxidase activity1.03E-03
17GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.03E-03
18GO:0004017: adenylate kinase activity1.23E-03
19GO:0016832: aldehyde-lyase activity1.23E-03
20GO:0004712: protein serine/threonine/tyrosine kinase activity1.65E-03
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.26E-03
22GO:0008794: arsenate reductase (glutaredoxin) activity2.93E-03
23GO:0005515: protein binding3.34E-03
24GO:0004650: polygalacturonase activity3.37E-03
25GO:0031072: heat shock protein binding3.50E-03
26GO:0010329: auxin efflux transmembrane transporter activity3.50E-03
27GO:0008083: growth factor activity3.80E-03
28GO:0016746: transferase activity, transferring acyl groups3.80E-03
29GO:0003714: transcription corepressor activity4.74E-03
30GO:0016829: lyase activity4.99E-03
31GO:0030570: pectate lyase activity6.12E-03
32GO:0003756: protein disulfide isomerase activity6.48E-03
33GO:0000156: phosphorelay response regulator activity9.67E-03
34GO:0016791: phosphatase activity1.01E-02
35GO:0005200: structural constituent of cytoskeleton1.05E-02
36GO:0015250: water channel activity1.14E-02
37GO:0016168: chlorophyll binding1.19E-02
38GO:0008236: serine-type peptidase activity1.33E-02
39GO:0005096: GTPase activator activity1.43E-02
40GO:0030145: manganese ion binding1.53E-02
41GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.53E-02
42GO:0003924: GTPase activity1.81E-02
43GO:0051537: 2 iron, 2 sulfur cluster binding2.06E-02
44GO:0016491: oxidoreductase activity2.23E-02
45GO:0008289: lipid binding2.52E-02
46GO:0051082: unfolded protein binding3.10E-02
47GO:0015035: protein disulfide oxidoreductase activity3.17E-02
48GO:0019843: rRNA binding3.64E-02
49GO:0004252: serine-type endopeptidase activity3.92E-02
50GO:0005516: calmodulin binding4.80E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009534: chloroplast thylakoid3.79E-20
4GO:0009535: chloroplast thylakoid membrane3.88E-18
5GO:0009507: chloroplast1.09E-13
6GO:0009543: chloroplast thylakoid lumen4.77E-11
7GO:0009570: chloroplast stroma1.14E-08
8GO:0009579: thylakoid1.45E-08
9GO:0030095: chloroplast photosystem II3.86E-08
10GO:0009941: chloroplast envelope1.54E-07
11GO:0031977: thylakoid lumen1.88E-07
12GO:0009538: photosystem I reaction center3.82E-07
13GO:0010007: magnesium chelatase complex1.58E-06
14GO:0009533: chloroplast stromal thylakoid3.54E-05
15GO:0043674: columella8.78E-05
16GO:0009508: plastid chromosome1.68E-04
17GO:0030093: chloroplast photosystem I2.08E-04
18GO:0009531: secondary cell wall5.01E-04
19GO:0009523: photosystem II6.17E-04
20GO:0009295: nucleoid8.40E-04
21GO:0042807: central vacuole1.44E-03
22GO:0031969: chloroplast membrane1.90E-03
23GO:0045298: tubulin complex2.14E-03
24GO:0042644: chloroplast nucleoid2.14E-03
25GO:0010287: plastoglobule4.37E-03
26GO:0009654: photosystem II oxygen evolving complex5.07E-03
27GO:0009705: plant-type vacuole membrane6.35E-03
28GO:0009522: photosystem I8.02E-03
29GO:0019898: extrinsic component of membrane8.42E-03
30GO:0009505: plant-type cell wall2.10E-02
31GO:0005618: cell wall2.84E-02
32GO:0016020: membrane3.80E-02
33GO:0005886: plasma membrane3.96E-02
34GO:0005615: extracellular space4.95E-02
35GO:0031225: anchored component of membrane4.97E-02
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Gene type



Gene DE type