co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0000188: inactivation of MAPK activity	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0007160: cell-matrix adhesion	0.00E+00
6	GO:0043633: polyadenylation-dependent RNA catabolic process	0.00E+00
7	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
8	GO:0048312: intracellular distribution of mitochondria	0.00E+00
9	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
10	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
11	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
12	GO:0010360: negative regulation of anion channel activity	0.00E+00
13	GO:0006468: protein phosphorylation	2.24E-05
14	GO:0016559: peroxisome fission	1.59E-04
15	GO:0031338: regulation of vesicle fusion	1.95E-04
16	GO:0098721: uracil import across plasma membrane	1.95E-04
17	GO:0006144: purine nucleobase metabolic process	1.95E-04
18	GO:0098702: adenine import across plasma membrane	1.95E-04
19	GO:1902466: positive regulation of histone H3-K27 trimethylation	1.95E-04
20	GO:1903648: positive regulation of chlorophyll catabolic process	1.95E-04
21	GO:0098710: guanine import across plasma membrane	1.95E-04
22	GO:0048482: plant ovule morphogenesis	1.95E-04
23	GO:0019628: urate catabolic process	1.95E-04
24	GO:0000303: response to superoxide	1.95E-04
25	GO:0010941: regulation of cell death	1.95E-04
26	GO:0035344: hypoxanthine transport	1.95E-04
27	GO:1902361: mitochondrial pyruvate transmembrane transport	1.95E-04
28	GO:0019441: tryptophan catabolic process to kynurenine	4.38E-04
29	GO:0050684: regulation of mRNA processing	4.38E-04
30	GO:0006212: uracil catabolic process	4.38E-04
31	GO:0007584: response to nutrient	4.38E-04
32	GO:0030010: establishment of cell polarity	4.38E-04
33	GO:0019483: beta-alanine biosynthetic process	4.38E-04
34	GO:0006850: mitochondrial pyruvate transport	4.38E-04
35	GO:0052542: defense response by callose deposition	4.38E-04
36	GO:0000266: mitochondrial fission	4.48E-04
37	GO:0032784: regulation of DNA-templated transcription, elongation	7.14E-04
38	GO:0010359: regulation of anion channel activity	7.14E-04
39	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.14E-04
40	GO:0080055: low-affinity nitrate transport	7.14E-04
41	GO:0090630: activation of GTPase activity	7.14E-04
42	GO:0046621: negative regulation of organ growth	7.14E-04
43	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.02E-03
44	GO:2001289: lipid X metabolic process	1.02E-03
45	GO:0070301: cellular response to hydrogen peroxide	1.02E-03
46	GO:0072334: UDP-galactose transmembrane transport	1.02E-03
47	GO:0006809: nitric oxide biosynthetic process	1.02E-03
48	GO:0009399: nitrogen fixation	1.02E-03
49	GO:0072583: clathrin-dependent endocytosis	1.02E-03
50	GO:0006970: response to osmotic stress	1.23E-03
51	GO:0010188: response to microbial phytotoxin	1.35E-03
52	GO:0006542: glutamine biosynthetic process	1.35E-03
53	GO:0033320: UDP-D-xylose biosynthetic process	1.35E-03
54	GO:0010107: potassium ion import	1.35E-03
55	GO:0005513: detection of calcium ion	1.72E-03
56	GO:0010225: response to UV-C	1.72E-03
57	GO:0009697: salicylic acid biosynthetic process	1.72E-03
58	GO:0006090: pyruvate metabolic process	1.72E-03
59	GO:0007264: small GTPase mediated signal transduction	2.01E-03
60	GO:0010337: regulation of salicylic acid metabolic process	2.12E-03
61	GO:0006014: D-ribose metabolic process	2.12E-03
62	GO:0070814: hydrogen sulfide biosynthetic process	2.12E-03
63	GO:0042732: D-xylose metabolic process	2.12E-03
64	GO:0048317: seed morphogenesis	2.12E-03
65	GO:1902456: regulation of stomatal opening	2.12E-03
66	GO:1900425: negative regulation of defense response to bacterium	2.12E-03
67	GO:0010310: regulation of hydrogen peroxide metabolic process	2.54E-03
68	GO:0009612: response to mechanical stimulus	2.54E-03
69	GO:0009816: defense response to bacterium, incompatible interaction	2.87E-03
70	GO:1900057: positive regulation of leaf senescence	3.00E-03
71	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.00E-03
72	GO:1902074: response to salt	3.00E-03
73	GO:0050790: regulation of catalytic activity	3.00E-03
74	GO:0006955: immune response	3.00E-03
75	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.00E-03
76	GO:0042128: nitrate assimilation	3.03E-03
77	GO:0006605: protein targeting	3.47E-03
78	GO:0032875: regulation of DNA endoreduplication	3.47E-03
79	GO:2000070: regulation of response to water deprivation	3.47E-03
80	GO:0009819: drought recovery	3.47E-03
81	GO:0009642: response to light intensity	3.47E-03
82	GO:1900150: regulation of defense response to fungus	3.47E-03
83	GO:0008219: cell death	3.53E-03
84	GO:0006499: N-terminal protein myristoylation	3.89E-03
85	GO:0030968: endoplasmic reticulum unfolded protein response	3.97E-03
86	GO:0043562: cellular response to nitrogen levels	3.97E-03
87	GO:0009880: embryonic pattern specification	3.97E-03
88	GO:0009873: ethylene-activated signaling pathway	4.06E-03
89	GO:0010119: regulation of stomatal movement	4.08E-03
90	GO:0009051: pentose-phosphate shunt, oxidative branch	4.49E-03
91	GO:0009821: alkaloid biosynthetic process	4.49E-03
92	GO:0042761: very long-chain fatty acid biosynthetic process	5.04E-03
93	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.04E-03
94	GO:0042742: defense response to bacterium	5.48E-03
95	GO:0000103: sulfate assimilation	5.61E-03
96	GO:0043069: negative regulation of programmed cell death	5.61E-03
97	GO:0010629: negative regulation of gene expression	5.61E-03
98	GO:0006995: cellular response to nitrogen starvation	5.61E-03
99	GO:0009651: response to salt stress	5.67E-03
100	GO:0071365: cellular response to auxin stimulus	6.81E-03
101	GO:0012501: programmed cell death	6.81E-03
102	GO:0015706: nitrate transport	6.81E-03
103	GO:0009723: response to ethylene	7.05E-03
104	GO:0006108: malate metabolic process	7.44E-03
105	GO:0010102: lateral root morphogenesis	7.44E-03
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.04E-03
107	GO:0010200: response to chitin	8.04E-03
108	GO:0009225: nucleotide-sugar metabolic process	8.77E-03
109	GO:0007031: peroxisome organization	8.77E-03
110	GO:0080188: RNA-directed DNA methylation	8.77E-03
111	GO:0034976: response to endoplasmic reticulum stress	9.46E-03
112	GO:0009626: plant-type hypersensitive response	9.78E-03
113	GO:2000377: regulation of reactive oxygen species metabolic process	1.02E-02
114	GO:0006825: copper ion transport	1.09E-02
115	GO:0016575: histone deacetylation	1.09E-02
116	GO:0051260: protein homooligomerization	1.17E-02
117	GO:0061077: chaperone-mediated protein folding	1.17E-02
118	GO:0009742: brassinosteroid mediated signaling pathway	1.17E-02
119	GO:0006366: transcription from RNA polymerase II promoter	1.17E-02
120	GO:0046686: response to cadmium ion	1.18E-02
121	GO:0007005: mitochondrion organization	1.24E-02
122	GO:0080092: regulation of pollen tube growth	1.24E-02
123	GO:0006397: mRNA processing	1.33E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.48E-02
125	GO:0008284: positive regulation of cell proliferation	1.48E-02
126	GO:0010118: stomatal movement	1.57E-02
127	GO:0009790: embryo development	1.62E-02
128	GO:0045489: pectin biosynthetic process	1.65E-02
129	GO:0048544: recognition of pollen	1.74E-02
130	GO:0006633: fatty acid biosynthetic process	1.75E-02
131	GO:0019252: starch biosynthetic process	1.83E-02
132	GO:0010183: pollen tube guidance	1.83E-02
133	GO:0010193: response to ozone	1.92E-02
134	GO:0000302: response to reactive oxygen species	1.92E-02
135	GO:0010150: leaf senescence	1.92E-02
136	GO:0006635: fatty acid beta-oxidation	1.92E-02
137	GO:0002229: defense response to oomycetes	1.92E-02
138	GO:0016032: viral process	2.01E-02
139	GO:0006470: protein dephosphorylation	2.19E-02
140	GO:0008380: RNA splicing	2.29E-02
141	GO:0010468: regulation of gene expression	2.29E-02
142	GO:0051607: defense response to virus	2.40E-02
143	GO:0009615: response to virus	2.50E-02
144	GO:0009738: abscisic acid-activated signaling pathway	2.50E-02
145	GO:0001666: response to hypoxia	2.50E-02
146	GO:0035556: intracellular signal transduction	2.79E-02
147	GO:0016049: cell growth	2.91E-02
148	GO:0048527: lateral root development	3.34E-02
149	GO:0055085: transmembrane transport	3.51E-02
150	GO:0016051: carbohydrate biosynthetic process	3.57E-02
151	GO:0009867: jasmonic acid mediated signaling pathway	3.57E-02
152	GO:0046777: protein autophosphorylation	3.93E-02
153	GO:0006897: endocytosis	4.03E-02
154	GO:0006631: fatty acid metabolic process	4.03E-02
155	GO:0045454: cell redox homeostasis	4.39E-02
156	GO:0006886: intracellular protein transport	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0004157: dihydropyrimidinase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
5	GO:0015370: solute:sodium symporter activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0004846: urate oxidase activity	0.00E+00
8	GO:0016301: kinase activity	1.30E-06
9	GO:0005524: ATP binding	8.43E-06
10	GO:0004674: protein serine/threonine kinase activity	5.10E-05
11	GO:0015207: adenine transmembrane transporter activity	1.95E-04
12	GO:0032050: clathrin heavy chain binding	1.95E-04
13	GO:0015208: guanine transmembrane transporter activity	1.95E-04
14	GO:0015294: solute:cation symporter activity	1.95E-04
15	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.95E-04
16	GO:0000386: second spliceosomal transesterification activity	1.95E-04
17	GO:0071949: FAD binding	2.40E-04
18	GO:0004713: protein tyrosine kinase activity	3.37E-04
19	GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.38E-04
20	GO:0004061: arylformamidase activity	4.38E-04
21	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.09E-04
22	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.14E-04
23	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.14E-04
24	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.14E-04
25	GO:0005047: signal recognition particle binding	7.14E-04
26	GO:0019829: cation-transporting ATPase activity	7.14E-04
27	GO:0000975: regulatory region DNA binding	7.14E-04
28	GO:0050833: pyruvate transmembrane transporter activity	7.14E-04
29	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.14E-04
30	GO:0004300: enoyl-CoA hydratase activity	1.02E-03
31	GO:0003727: single-stranded RNA binding	1.22E-03
32	GO:0016004: phospholipase activator activity	1.35E-03
33	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.35E-03
34	GO:0015204: urea transmembrane transporter activity	1.35E-03
35	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.35E-03
36	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.35E-03
37	GO:0015210: uracil transmembrane transporter activity	1.35E-03
38	GO:0070628: proteasome binding	1.35E-03
39	GO:0004470: malic enzyme activity	1.35E-03
40	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.72E-03
41	GO:0004356: glutamate-ammonia ligase activity	1.72E-03
42	GO:0005459: UDP-galactose transmembrane transporter activity	1.72E-03
43	GO:0008948: oxaloacetate decarboxylase activity	1.72E-03
44	GO:0017137: Rab GTPase binding	1.72E-03
45	GO:0035252: UDP-xylosyltransferase activity	2.12E-03
46	GO:0048040: UDP-glucuronate decarboxylase activity	2.12E-03
47	GO:0031593: polyubiquitin binding	2.12E-03
48	GO:0070403: NAD+ binding	2.54E-03
49	GO:0102391: decanoate--CoA ligase activity	2.54E-03
50	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.54E-03
51	GO:0004012: phospholipid-translocating ATPase activity	2.54E-03
52	GO:0004747: ribokinase activity	2.54E-03
53	GO:0008143: poly(A) binding	3.00E-03
54	GO:0004467: long-chain fatty acid-CoA ligase activity	3.00E-03
55	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.47E-03
56	GO:0008865: fructokinase activity	3.47E-03
57	GO:0005096: GTPase activator activity	3.71E-03
58	GO:0005267: potassium channel activity	3.97E-03
59	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.97E-03
60	GO:0005375: copper ion transmembrane transporter activity	3.97E-03
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.88E-03
62	GO:0030955: potassium ion binding	5.04E-03
63	GO:0016844: strictosidine synthase activity	5.04E-03
64	GO:0004743: pyruvate kinase activity	5.04E-03
65	GO:0005543: phospholipid binding	6.20E-03
66	GO:0015293: symporter activity	6.46E-03
67	GO:0004521: endoribonuclease activity	6.81E-03
68	GO:0004497: monooxygenase activity	7.69E-03
69	GO:0004725: protein tyrosine phosphatase activity	9.46E-03
70	GO:0005515: protein binding	9.54E-03
71	GO:0004407: histone deacetylase activity	1.02E-02
72	GO:0043130: ubiquitin binding	1.02E-02
73	GO:0005528: FK506 binding	1.02E-02
74	GO:0030246: carbohydrate binding	1.03E-02
75	GO:0043424: protein histidine kinase binding	1.09E-02
76	GO:0003729: mRNA binding	1.09E-02
77	GO:0033612: receptor serine/threonine kinase binding	1.17E-02
78	GO:0008408: 3'-5' exonuclease activity	1.17E-02
79	GO:0004707: MAP kinase activity	1.17E-02
80	GO:0003756: protein disulfide isomerase activity	1.40E-02
81	GO:0047134: protein-disulfide reductase activity	1.48E-02
82	GO:0015144: carbohydrate transmembrane transporter activity	1.66E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.74E-02
84	GO:0016853: isomerase activity	1.74E-02
85	GO:0010181: FMN binding	1.74E-02
86	GO:0005351: sugar:proton symporter activity	1.87E-02
87	GO:0004197: cysteine-type endopeptidase activity	2.01E-02
88	GO:0003824: catalytic activity	2.19E-02
89	GO:0008483: transaminase activity	2.30E-02
90	GO:0051213: dioxygenase activity	2.50E-02
91	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.70E-02
92	GO:0004683: calmodulin-dependent protein kinase activity	2.80E-02
93	GO:0004806: triglyceride lipase activity	2.80E-02
94	GO:0000287: magnesium ion binding	2.91E-02
95	GO:0046982: protein heterodimerization activity	2.91E-02
96	GO:0004672: protein kinase activity	3.36E-02
97	GO:0003697: single-stranded DNA binding	3.57E-02
98	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.57E-02
99	GO:0003993: acid phosphatase activity	3.68E-02
100	GO:0004364: glutathione transferase activity	4.15E-02
101	GO:0005516: calmodulin binding	4.32E-02
102	GO:0004871: signal transducer activity	4.60E-02
103	GO:0005198: structural molecule activity	4.64E-02
104	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.77E-02
105	GO:0005525: GTP binding	4.81E-02
106	GO:0004722: protein serine/threonine phosphatase activity	4.81E-02
107	GO:0051287: NAD binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0008305: integrin complex	0.00E+00
3	GO:0005886: plasma membrane	8.50E-09
4	GO:0005783: endoplasmic reticulum	5.64E-05
5	GO:0005794: Golgi apparatus	1.05E-04
6	GO:0005829: cytosol	2.95E-04
7	GO:0030125: clathrin vesicle coat	3.37E-04
8	GO:0000176: nuclear exosome (RNase complex)	7.14E-04
9	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.14E-04
10	GO:0005741: mitochondrial outer membrane	9.50E-04
11	GO:0005778: peroxisomal membrane	2.42E-03
12	GO:0030173: integral component of Golgi membrane	2.54E-03
13	GO:0016363: nuclear matrix	2.54E-03
14	GO:0031305: integral component of mitochondrial inner membrane	3.47E-03
15	GO:0030131: clathrin adaptor complex	3.47E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.97E-03
17	GO:0010494: cytoplasmic stress granule	4.49E-03
18	GO:0005768: endosome	4.55E-03
19	GO:0005773: vacuole	5.72E-03
20	GO:0016021: integral component of membrane	6.25E-03
21	GO:0016602: CCAAT-binding factor complex	7.44E-03
22	GO:0005764: lysosome	8.10E-03
23	GO:0005777: peroxisome	8.13E-03
24	GO:0030176: integral component of endoplasmic reticulum membrane	8.77E-03
25	GO:0043234: protein complex	9.46E-03
26	GO:0012505: endomembrane system	1.07E-02
27	GO:0005905: clathrin-coated pit	1.17E-02
28	GO:0005839: proteasome core complex	1.17E-02
29	GO:0005802: trans-Golgi network	1.34E-02
30	GO:0005788: endoplasmic reticulum lumen	2.60E-02
31	GO:0000786: nucleosome	3.46E-02
32	GO:0005789: endoplasmic reticulum membrane	3.56E-02
33	GO:0031902: late endosome membrane	4.03E-02
34	GO:0005634: nucleus	4.17E-02
35	GO:0005774: vacuolar membrane	4.53E-02
36	GO:0016020: membrane	4.93E-02