Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24280

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0051246: regulation of protein metabolic process0.00E+00
9GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0009657: plastid organization3.85E-08
12GO:0009773: photosynthetic electron transport in photosystem I2.03E-07
13GO:0015979: photosynthesis4.64E-07
14GO:1902326: positive regulation of chlorophyll biosynthetic process1.93E-06
15GO:0010027: thylakoid membrane organization1.89E-05
16GO:0006655: phosphatidylglycerol biosynthetic process7.11E-05
17GO:0042549: photosystem II stabilization7.11E-05
18GO:0042026: protein refolding9.88E-05
19GO:1901259: chloroplast rRNA processing9.88E-05
20GO:0006457: protein folding1.51E-04
21GO:0071588: hydrogen peroxide mediated signaling pathway2.02E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.02E-04
23GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.02E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process2.02E-04
25GO:1904964: positive regulation of phytol biosynthetic process2.02E-04
26GO:0033481: galacturonate biosynthetic process2.02E-04
27GO:0009658: chloroplast organization2.07E-04
28GO:0071482: cellular response to light stimulus2.08E-04
29GO:0032544: plastid translation2.08E-04
30GO:0055114: oxidation-reduction process2.18E-04
31GO:0000373: Group II intron splicing2.53E-04
32GO:0045036: protein targeting to chloroplast3.54E-04
33GO:0015995: chlorophyll biosynthetic process3.73E-04
34GO:0006415: translational termination4.10E-04
35GO:0006352: DNA-templated transcription, initiation4.10E-04
36GO:0018298: protein-chromophore linkage4.26E-04
37GO:0030388: fructose 1,6-bisphosphate metabolic process4.52E-04
38GO:0010270: photosystem II oxygen evolving complex assembly4.52E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly4.52E-04
40GO:0016560: protein import into peroxisome matrix, docking4.52E-04
41GO:0009662: etioplast organization4.52E-04
42GO:0097054: L-glutamate biosynthetic process4.52E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process4.52E-04
44GO:0006729: tetrahydrobiopterin biosynthetic process4.52E-04
45GO:0006094: gluconeogenesis5.33E-04
46GO:0010207: photosystem II assembly6.01E-04
47GO:0010020: chloroplast fission6.01E-04
48GO:0006000: fructose metabolic process7.36E-04
49GO:0010581: regulation of starch biosynthetic process7.36E-04
50GO:0006518: peptide metabolic process7.36E-04
51GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition7.36E-04
52GO:0051604: protein maturation7.36E-04
53GO:0009768: photosynthesis, light harvesting in photosystem I9.08E-04
54GO:0051085: chaperone mediated protein folding requiring cofactor1.05E-03
55GO:0010239: chloroplast mRNA processing1.05E-03
56GO:0006537: glutamate biosynthetic process1.05E-03
57GO:0006809: nitric oxide biosynthetic process1.05E-03
58GO:0010731: protein glutathionylation1.05E-03
59GO:0006424: glutamyl-tRNA aminoacylation1.05E-03
60GO:0016556: mRNA modification1.05E-03
61GO:0043572: plastid fission1.05E-03
62GO:2001141: regulation of RNA biosynthetic process1.05E-03
63GO:0006515: misfolded or incompletely synthesized protein catabolic process1.05E-03
64GO:0016117: carotenoid biosynthetic process1.38E-03
65GO:0051781: positive regulation of cell division1.40E-03
66GO:0006661: phosphatidylinositol biosynthetic process1.40E-03
67GO:0006546: glycine catabolic process1.40E-03
68GO:0071483: cellular response to blue light1.40E-03
69GO:0019676: ammonia assimilation cycle1.40E-03
70GO:0006096: glycolytic process1.41E-03
71GO:0009741: response to brassinosteroid1.61E-03
72GO:0032543: mitochondrial translation1.78E-03
73GO:0010236: plastoquinone biosynthetic process1.78E-03
74GO:0045038: protein import into chloroplast thylakoid membrane1.78E-03
75GO:0006461: protein complex assembly1.78E-03
76GO:0009107: lipoate biosynthetic process1.78E-03
77GO:0008654: phospholipid biosynthetic process1.85E-03
78GO:0010358: leaf shaping2.19E-03
79GO:0010190: cytochrome b6f complex assembly2.19E-03
80GO:0006828: manganese ion transport2.19E-03
81GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.19E-03
82GO:0019509: L-methionine salvage from methylthioadenosine2.63E-03
83GO:0006458: 'de novo' protein folding2.63E-03
84GO:0010189: vitamin E biosynthetic process2.63E-03
85GO:0010019: chloroplast-nucleus signaling pathway2.63E-03
86GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.09E-03
87GO:0010196: nonphotochemical quenching3.09E-03
88GO:0050829: defense response to Gram-negative bacterium3.09E-03
89GO:0009645: response to low light intensity stimulus3.09E-03
90GO:0006400: tRNA modification3.09E-03
91GO:0048564: photosystem I assembly3.59E-03
92GO:0045292: mRNA cis splicing, via spliceosome3.59E-03
93GO:0008610: lipid biosynthetic process3.59E-03
94GO:0006353: DNA-templated transcription, termination3.59E-03
95GO:0009451: RNA modification3.68E-03
96GO:0006002: fructose 6-phosphate metabolic process4.10E-03
97GO:0019430: removal of superoxide radicals4.10E-03
98GO:0017004: cytochrome complex assembly4.10E-03
99GO:0006098: pentose-phosphate shunt4.65E-03
100GO:0009637: response to blue light4.69E-03
101GO:0042761: very long-chain fatty acid biosynthetic process5.21E-03
102GO:1900865: chloroplast RNA modification5.21E-03
103GO:0010380: regulation of chlorophyll biosynthetic process5.21E-03
104GO:0006508: proteolysis5.21E-03
105GO:0010114: response to red light6.04E-03
106GO:0006816: calcium ion transport6.41E-03
107GO:0009073: aromatic amino acid family biosynthetic process6.41E-03
108GO:0043085: positive regulation of catalytic activity6.41E-03
109GO:0016485: protein processing6.41E-03
110GO:0009636: response to toxic substance6.78E-03
111GO:0016024: CDP-diacylglycerol biosynthetic process7.04E-03
112GO:0009767: photosynthetic electron transport chain7.70E-03
113GO:0005986: sucrose biosynthetic process7.70E-03
114GO:0019253: reductive pentose-phosphate cycle8.37E-03
115GO:0009793: embryo development ending in seed dormancy8.62E-03
116GO:0009225: nucleotide-sugar metabolic process9.07E-03
117GO:0005985: sucrose metabolic process9.07E-03
118GO:0090351: seedling development9.07E-03
119GO:0010025: wax biosynthetic process9.79E-03
120GO:0016575: histone deacetylation1.13E-02
121GO:0006418: tRNA aminoacylation for protein translation1.13E-02
122GO:0009695: jasmonic acid biosynthetic process1.13E-02
123GO:0061077: chaperone-mediated protein folding1.21E-02
124GO:0031408: oxylipin biosynthetic process1.21E-02
125GO:0032259: methylation1.27E-02
126GO:0016226: iron-sulfur cluster assembly1.29E-02
127GO:0007005: mitochondrion organization1.29E-02
128GO:0040007: growth1.37E-02
129GO:0008152: metabolic process1.52E-02
130GO:0042335: cuticle development1.62E-02
131GO:0000413: protein peptidyl-prolyl isomerization1.62E-02
132GO:0042744: hydrogen peroxide catabolic process1.66E-02
133GO:0010268: brassinosteroid homeostasis1.71E-02
134GO:0009646: response to absence of light1.80E-02
135GO:0006814: sodium ion transport1.80E-02
136GO:0009791: post-embryonic development1.89E-02
137GO:0080156: mitochondrial mRNA modification1.99E-02
138GO:0000302: response to reactive oxygen species1.99E-02
139GO:0010193: response to ozone1.99E-02
140GO:0016132: brassinosteroid biosynthetic process1.99E-02
141GO:0032502: developmental process2.08E-02
142GO:0016125: sterol metabolic process2.28E-02
143GO:0071805: potassium ion transmembrane transport2.38E-02
144GO:0009735: response to cytokinin2.48E-02
145GO:0001666: response to hypoxia2.58E-02
146GO:0009816: defense response to bacterium, incompatible interaction2.69E-02
147GO:0009627: systemic acquired resistance2.80E-02
148GO:0042128: nitrate assimilation2.80E-02
149GO:0048481: plant ovule development3.12E-02
150GO:0008219: cell death3.12E-02
151GO:0009409: response to cold3.21E-02
152GO:0009407: toxin catabolic process3.35E-02
153GO:0010218: response to far red light3.35E-02
154GO:0048527: lateral root development3.46E-02
155GO:0009631: cold acclimation3.46E-02
156GO:0006810: transport3.61E-02
157GO:0048366: leaf development3.67E-02
158GO:0009853: photorespiration3.69E-02
159GO:0009867: jasmonic acid mediated signaling pathway3.69E-02
160GO:0034599: cellular response to oxidative stress3.81E-02
161GO:0009744: response to sucrose4.42E-02
162GO:0009644: response to high light intensity4.68E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0046608: carotenoid isomerase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
8GO:0043874: acireductone synthase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0043014: alpha-tubulin binding0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
17GO:0004176: ATP-dependent peptidase activity2.99E-08
18GO:0004033: aldo-keto reductase (NADP) activity2.94E-06
19GO:0008237: metallopeptidase activity1.48E-05
20GO:0016149: translation release factor activity, codon specific1.63E-05
21GO:0016987: sigma factor activity3.00E-05
22GO:0001053: plastid sigma factor activity3.00E-05
23GO:0019843: rRNA binding4.11E-05
24GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.02E-04
25GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity2.02E-04
26GO:0017169: CDP-alcohol phosphatidyltransferase activity2.02E-04
27GO:0009496: plastoquinol--plastocyanin reductase activity2.02E-04
28GO:0003867: 4-aminobutyrate transaminase activity2.02E-04
29GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.02E-04
30GO:0004321: fatty-acyl-CoA synthase activity2.02E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.02E-04
32GO:0005080: protein kinase C binding2.02E-04
33GO:0016041: glutamate synthase (ferredoxin) activity2.02E-04
34GO:0030941: chloroplast targeting sequence binding2.02E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.02E-04
36GO:0010012: steroid 22-alpha hydroxylase activity2.02E-04
37GO:0003747: translation release factor activity2.53E-04
38GO:0051082: unfolded protein binding2.59E-04
39GO:0005525: GTP binding2.74E-04
40GO:0016168: chlorophyll binding3.24E-04
41GO:0044183: protein binding involved in protein folding4.10E-04
42GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.52E-04
43GO:0008805: carbon-monoxide oxygenase activity4.52E-04
44GO:0016630: protochlorophyllide reductase activity4.52E-04
45GO:0004222: metalloendopeptidase activity4.84E-04
46GO:0031072: heat shock protein binding5.33E-04
47GO:0003924: GTPase activity6.35E-04
48GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity7.36E-04
49GO:0016992: lipoate synthase activity7.36E-04
50GO:0002161: aminoacyl-tRNA editing activity7.36E-04
51GO:0030267: glyoxylate reductase (NADP) activity7.36E-04
52GO:0070402: NADPH binding7.36E-04
53GO:0031409: pigment binding7.47E-04
54GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.61E-04
55GO:0008508: bile acid:sodium symporter activity1.05E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.05E-03
57GO:0048487: beta-tubulin binding1.05E-03
58GO:0051861: glycolipid binding1.40E-03
59GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.40E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity1.40E-03
61GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.40E-03
62GO:0043495: protein anchor1.40E-03
63GO:0050378: UDP-glucuronate 4-epimerase activity1.40E-03
64GO:0008374: O-acyltransferase activity1.78E-03
65GO:0003959: NADPH dehydrogenase activity1.78E-03
66GO:0051538: 3 iron, 4 sulfur cluster binding1.78E-03
67GO:0004605: phosphatidate cytidylyltransferase activity2.19E-03
68GO:0004332: fructose-bisphosphate aldolase activity2.19E-03
69GO:0004130: cytochrome-c peroxidase activity2.19E-03
70GO:0016688: L-ascorbate peroxidase activity2.19E-03
71GO:0003723: RNA binding2.48E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.63E-03
73GO:0016491: oxidoreductase activity2.86E-03
74GO:0019899: enzyme binding3.09E-03
75GO:0004620: phospholipase activity3.09E-03
76GO:0004519: endonuclease activity3.37E-03
77GO:0008236: serine-type peptidase activity3.52E-03
78GO:0008312: 7S RNA binding3.59E-03
79GO:0043022: ribosome binding3.59E-03
80GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.10E-03
81GO:0016207: 4-coumarate-CoA ligase activity4.65E-03
82GO:0046872: metal ion binding4.72E-03
83GO:0042802: identical protein binding4.84E-03
84GO:0005384: manganese ion transmembrane transporter activity5.21E-03
85GO:0008047: enzyme activator activity5.80E-03
86GO:0004364: glutathione transferase activity5.80E-03
87GO:0008168: methyltransferase activity5.93E-03
88GO:0047372: acylglycerol lipase activity6.41E-03
89GO:0043621: protein self-association6.53E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding6.53E-03
91GO:0000049: tRNA binding7.04E-03
92GO:0016787: hydrolase activity7.42E-03
93GO:0009982: pseudouridine synthase activity7.70E-03
94GO:0004022: alcohol dehydrogenase (NAD) activity7.70E-03
95GO:0015095: magnesium ion transmembrane transporter activity7.70E-03
96GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.14E-03
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.37E-03
98GO:0004407: histone deacetylase activity1.05E-02
99GO:0051536: iron-sulfur cluster binding1.05E-02
100GO:0016874: ligase activity1.09E-02
101GO:0043424: protein histidine kinase binding1.13E-02
102GO:0015079: potassium ion transmembrane transporter activity1.13E-02
103GO:0019706: protein-cysteine S-palmitoyltransferase activity1.21E-02
104GO:0022891: substrate-specific transmembrane transporter activity1.37E-02
105GO:0003756: protein disulfide isomerase activity1.45E-02
106GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.50E-02
107GO:0004812: aminoacyl-tRNA ligase activity1.54E-02
108GO:0004791: thioredoxin-disulfide reductase activity1.80E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.18E-02
110GO:0016887: ATPase activity2.34E-02
111GO:0003824: catalytic activity2.36E-02
112GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.01E-02
113GO:0000287: magnesium ion binding3.06E-02
114GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.12E-02
115GO:0030145: manganese ion binding3.46E-02
116GO:0016740: transferase activity3.54E-02
117GO:0020037: heme binding4.00E-02
118GO:0051539: 4 iron, 4 sulfur cluster binding4.05E-02
119GO:0005198: structural molecule activity4.80E-02
120GO:0042803: protein homodimerization activity4.82E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0043233: organelle lumen0.00E+00
3GO:0009507: chloroplast1.32E-61
4GO:0009941: chloroplast envelope1.49E-28
5GO:0009570: chloroplast stroma9.85E-23
6GO:0009535: chloroplast thylakoid membrane3.26E-19
7GO:0009534: chloroplast thylakoid8.56E-11
8GO:0031969: chloroplast membrane2.77E-07
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.03E-06
10GO:0009533: chloroplast stromal thylakoid1.31E-04
11GO:0009523: photosystem II1.64E-04
12GO:0009536: plastid1.78E-04
13GO:0009782: photosystem I antenna complex2.02E-04
14GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.02E-04
15GO:0009543: chloroplast thylakoid lumen3.73E-04
16GO:0080085: signal recognition particle, chloroplast targeting4.52E-04
17GO:0009579: thylakoid5.86E-04
18GO:0030076: light-harvesting complex6.71E-04
19GO:0005782: peroxisomal matrix7.36E-04
20GO:0042651: thylakoid membrane9.08E-04
21GO:0009526: plastid envelope1.40E-03
22GO:0009512: cytochrome b6f complex1.78E-03
23GO:0055035: plastid thylakoid membrane1.78E-03
24GO:0010319: stromule2.54E-03
25GO:0030529: intracellular ribonucleoprotein complex2.85E-03
26GO:0031359: integral component of chloroplast outer membrane3.09E-03
27GO:0043231: intracellular membrane-bounded organelle3.44E-03
28GO:0009707: chloroplast outer membrane3.71E-03
29GO:0009539: photosystem II reaction center4.10E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.10E-03
31GO:0031977: thylakoid lumen5.57E-03
32GO:0009508: plastid chromosome7.70E-03
33GO:0030095: chloroplast photosystem II8.37E-03
34GO:0000312: plastid small ribosomal subunit8.37E-03
35GO:0030659: cytoplasmic vesicle membrane8.37E-03
36GO:0009654: photosystem II oxygen evolving complex1.13E-02
37GO:0009706: chloroplast inner membrane1.16E-02
38GO:0009532: plastid stroma1.21E-02
39GO:0010287: plastoglobule1.38E-02
40GO:0009522: photosystem I1.80E-02
41GO:0005759: mitochondrial matrix1.83E-02
42GO:0005840: ribosome2.20E-02
43GO:0032580: Golgi cisterna membrane2.28E-02
44GO:0009295: nucleoid2.38E-02
45GO:0046658: anchored component of plasma membrane2.67E-02
46GO:0016021: integral component of membrane4.96E-02
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Gene type



Gene DE type