Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0017009: protein-phycocyanobilin linkage0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
12GO:0006429: leucyl-tRNA aminoacylation0.00E+00
13GO:0009773: photosynthetic electron transport in photosystem I5.84E-13
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.42E-07
15GO:0015979: photosynthesis3.28E-07
16GO:0005986: sucrose biosynthetic process1.34E-06
17GO:0006810: transport3.43E-06
18GO:1902326: positive regulation of chlorophyll biosynthetic process4.02E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process4.02E-06
20GO:0071482: cellular response to light stimulus1.11E-05
21GO:0009658: chloroplast organization1.21E-05
22GO:0031022: nuclear migration along microfilament1.44E-05
23GO:0006000: fructose metabolic process1.44E-05
24GO:0019252: starch biosynthetic process2.34E-05
25GO:0006094: gluconeogenesis5.34E-05
26GO:0010027: thylakoid membrane organization5.60E-05
27GO:0010021: amylopectin biosynthetic process5.77E-05
28GO:0019253: reductive pentose-phosphate cycle6.46E-05
29GO:0009904: chloroplast accumulation movement9.10E-05
30GO:0042549: photosystem II stabilization1.32E-04
31GO:0009853: photorespiration1.42E-04
32GO:0009903: chloroplast avoidance movement1.81E-04
33GO:0010196: nonphotochemical quenching2.36E-04
34GO:0009735: response to cytokinin2.57E-04
35GO:0051180: vitamin transport2.97E-04
36GO:0009443: pyridoxal 5'-phosphate salvage2.97E-04
37GO:0030974: thiamine pyrophosphate transport2.97E-04
38GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.97E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process2.97E-04
40GO:1904964: positive regulation of phytol biosynthetic process2.97E-04
41GO:0051775: response to redox state2.97E-04
42GO:0071277: cellular response to calcium ion2.97E-04
43GO:0080093: regulation of photorespiration2.97E-04
44GO:0031998: regulation of fatty acid beta-oxidation2.97E-04
45GO:0048564: photosystem I assembly2.98E-04
46GO:0009704: de-etiolation2.98E-04
47GO:0006002: fructose 6-phosphate metabolic process3.66E-04
48GO:0009657: plastid organization3.66E-04
49GO:0045036: protein targeting to chloroplast6.09E-04
50GO:0080005: photosystem stoichiometry adjustment6.50E-04
51GO:0046741: transport of virus in host, tissue to tissue6.50E-04
52GO:0009662: etioplast organization6.50E-04
53GO:0015893: drug transport6.50E-04
54GO:0034755: iron ion transmembrane transport6.50E-04
55GO:0097054: L-glutamate biosynthetic process6.50E-04
56GO:1904143: positive regulation of carotenoid biosynthetic process6.50E-04
57GO:0071457: cellular response to ozone6.50E-04
58GO:0010270: photosystem II oxygen evolving complex assembly6.50E-04
59GO:0018119: peptidyl-cysteine S-nitrosylation7.02E-04
60GO:0018298: protein-chromophore linkage8.58E-04
61GO:0006108: malate metabolic process9.08E-04
62GO:0009767: photosynthetic electron transport chain9.08E-04
63GO:0010207: photosystem II assembly1.02E-03
64GO:0051604: protein maturation1.05E-03
65GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.05E-03
66GO:0006081: cellular aldehyde metabolic process1.05E-03
67GO:0005977: glycogen metabolic process1.05E-03
68GO:0006011: UDP-glucose metabolic process1.05E-03
69GO:0045910: negative regulation of DNA recombination1.05E-03
70GO:0000913: preprophase band assembly1.05E-03
71GO:0055114: oxidation-reduction process1.23E-03
72GO:0046653: tetrahydrofolate metabolic process1.51E-03
73GO:0006107: oxaloacetate metabolic process1.51E-03
74GO:0006537: glutamate biosynthetic process1.51E-03
75GO:0010731: protein glutathionylation1.51E-03
76GO:0043572: plastid fission1.51E-03
77GO:0016556: mRNA modification1.51E-03
78GO:0006020: inositol metabolic process1.51E-03
79GO:0071484: cellular response to light intensity1.51E-03
80GO:0009152: purine ribonucleotide biosynthetic process1.51E-03
81GO:0016226: iron-sulfur cluster assembly1.86E-03
82GO:0009765: photosynthesis, light harvesting2.02E-03
83GO:0006109: regulation of carbohydrate metabolic process2.02E-03
84GO:0045727: positive regulation of translation2.02E-03
85GO:0015994: chlorophyll metabolic process2.02E-03
86GO:0006021: inositol biosynthetic process2.02E-03
87GO:0071483: cellular response to blue light2.02E-03
88GO:0006734: NADH metabolic process2.02E-03
89GO:0019676: ammonia assimilation cycle2.02E-03
90GO:0071486: cellular response to high light intensity2.02E-03
91GO:0006508: proteolysis2.50E-03
92GO:0042631: cellular response to water deprivation2.57E-03
93GO:0080110: sporopollenin biosynthetic process2.58E-03
94GO:0071493: cellular response to UV-B2.58E-03
95GO:0032543: mitochondrial translation2.58E-03
96GO:0006564: L-serine biosynthetic process2.58E-03
97GO:0045038: protein import into chloroplast thylakoid membrane2.58E-03
98GO:0043097: pyrimidine nucleoside salvage2.58E-03
99GO:0031365: N-terminal protein amino acid modification2.58E-03
100GO:0006097: glyoxylate cycle2.58E-03
101GO:0006461: protein complex assembly2.58E-03
102GO:0007018: microtubule-based movement2.98E-03
103GO:0010190: cytochrome b6f complex assembly3.19E-03
104GO:0006828: manganese ion transport3.19E-03
105GO:0006206: pyrimidine nucleobase metabolic process3.19E-03
106GO:0046855: inositol phosphate dephosphorylation3.19E-03
107GO:0010942: positive regulation of cell death3.19E-03
108GO:0010304: PSII associated light-harvesting complex II catabolic process3.19E-03
109GO:0009791: post-embryonic development3.20E-03
110GO:0016032: viral process3.65E-03
111GO:0006458: 'de novo' protein folding3.84E-03
112GO:0042026: protein refolding3.84E-03
113GO:1901259: chloroplast rRNA processing3.84E-03
114GO:0009854: oxidative photosynthetic carbon pathway3.84E-03
115GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.53E-03
116GO:0009645: response to low light intensity stimulus4.53E-03
117GO:0006400: tRNA modification4.53E-03
118GO:0009058: biosynthetic process5.15E-03
119GO:0005978: glycogen biosynthetic process5.26E-03
120GO:0009642: response to light intensity5.26E-03
121GO:0052543: callose deposition in cell wall5.26E-03
122GO:0019430: removal of superoxide radicals6.03E-03
123GO:0032544: plastid translation6.03E-03
124GO:0017004: cytochrome complex assembly6.03E-03
125GO:0032259: methylation6.50E-03
126GO:0009821: alkaloid biosynthetic process6.83E-03
127GO:0010206: photosystem II repair6.83E-03
128GO:0006098: pentose-phosphate shunt6.83E-03
129GO:0090333: regulation of stomatal closure6.83E-03
130GO:0000373: Group II intron splicing6.83E-03
131GO:0006457: protein folding7.27E-03
132GO:0010205: photoinhibition7.67E-03
133GO:1900865: chloroplast RNA modification7.67E-03
134GO:0005982: starch metabolic process7.67E-03
135GO:0006298: mismatch repair8.55E-03
136GO:0006099: tricarboxylic acid cycle8.56E-03
137GO:0009409: response to cold9.09E-03
138GO:0006816: calcium ion transport9.46E-03
139GO:0043085: positive regulation of catalytic activity9.46E-03
140GO:0006879: cellular iron ion homeostasis9.46E-03
141GO:0006352: DNA-templated transcription, initiation9.46E-03
142GO:0000272: polysaccharide catabolic process9.46E-03
143GO:0006415: translational termination9.46E-03
144GO:0006790: sulfur compound metabolic process1.04E-02
145GO:0005983: starch catabolic process1.04E-02
146GO:0009644: response to high light intensity1.14E-02
147GO:0010628: positive regulation of gene expression1.14E-02
148GO:0006541: glutamine metabolic process1.24E-02
149GO:0010020: chloroplast fission1.24E-02
150GO:0005985: sucrose metabolic process1.34E-02
151GO:0090351: seedling development1.34E-02
152GO:0046854: phosphatidylinositol phosphorylation1.34E-02
153GO:0006364: rRNA processing1.43E-02
154GO:0016575: histone deacetylation1.68E-02
155GO:0006418: tRNA aminoacylation for protein translation1.68E-02
156GO:0009768: photosynthesis, light harvesting in photosystem I1.68E-02
157GO:0007017: microtubule-based process1.68E-02
158GO:0051302: regulation of cell division1.68E-02
159GO:0061077: chaperone-mediated protein folding1.79E-02
160GO:0006730: one-carbon metabolic process1.91E-02
161GO:0010584: pollen exine formation2.16E-02
162GO:0009561: megagametogenesis2.16E-02
163GO:0016117: carotenoid biosynthetic process2.29E-02
164GO:0071472: cellular response to salt stress2.55E-02
165GO:0006662: glycerol ether metabolic process2.55E-02
166GO:0009741: response to brassinosteroid2.55E-02
167GO:0006814: sodium ion transport2.68E-02
168GO:0009646: response to absence of light2.68E-02
169GO:0080156: mitochondrial mRNA modification2.96E-02
170GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.96E-02
171GO:0000302: response to reactive oxygen species2.96E-02
172GO:0008152: metabolic process3.07E-02
173GO:0032502: developmental process3.10E-02
174GO:0005975: carbohydrate metabolic process3.19E-02
175GO:0030163: protein catabolic process3.25E-02
176GO:0046686: response to cadmium ion3.33E-02
177GO:0007623: circadian rhythm3.52E-02
178GO:0071805: potassium ion transmembrane transport3.55E-02
179GO:0000910: cytokinesis3.70E-02
180GO:0001666: response to hypoxia3.85E-02
181GO:0009816: defense response to bacterium, incompatible interaction4.00E-02
182GO:0042128: nitrate assimilation4.16E-02
183GO:0010468: regulation of gene expression4.19E-02
184GO:0009817: defense response to fungus, incompatible interaction4.65E-02
185GO:0042742: defense response to bacterium4.65E-02
RankGO TermAdjusted P value
1GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
2GO:0033721: aldehyde dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0008974: phosphoribulokinase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0004760: serine-pyruvate transaminase activity0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:1990534: thermospermine oxidase activity0.00E+00
14GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
15GO:0051738: xanthophyll binding0.00E+00
16GO:0050281: serine-glyoxylate transaminase activity0.00E+00
17GO:0005048: signal sequence binding0.00E+00
18GO:0046608: carotenoid isomerase activity0.00E+00
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.14E-07
20GO:0031072: heat shock protein binding1.34E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.02E-06
22GO:0051082: unfolded protein binding7.32E-06
23GO:0004033: aldo-keto reductase (NADP) activity7.70E-06
24GO:0050307: sucrose-phosphate phosphatase activity1.44E-05
25GO:0048038: quinone binding2.69E-05
26GO:0009011: starch synthase activity5.77E-05
27GO:0016168: chlorophyll binding6.22E-05
28GO:0004222: metalloendopeptidase activity1.10E-04
29GO:0016615: malate dehydrogenase activity1.32E-04
30GO:0004176: ATP-dependent peptidase activity1.43E-04
31GO:0030060: L-malate dehydrogenase activity1.81E-04
32GO:0022891: substrate-specific transmembrane transporter activity1.85E-04
33GO:0016491: oxidoreductase activity2.68E-04
34GO:0090422: thiamine pyrophosphate transporter activity2.97E-04
35GO:0009496: plastoquinol--plastocyanin reductase activity2.97E-04
36GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.97E-04
37GO:0070006: metalloaminopeptidase activity2.97E-04
38GO:0050308: sugar-phosphatase activity2.97E-04
39GO:0019203: carbohydrate phosphatase activity2.97E-04
40GO:0005080: protein kinase C binding2.97E-04
41GO:0008242: omega peptidase activity2.97E-04
42GO:0003867: 4-aminobutyrate transaminase activity2.97E-04
43GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.97E-04
44GO:0008746: NAD(P)+ transhydrogenase activity2.97E-04
45GO:0016041: glutamate synthase (ferredoxin) activity2.97E-04
46GO:0030941: chloroplast targeting sequence binding2.97E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity6.50E-04
48GO:0033201: alpha-1,4-glucan synthase activity6.50E-04
49GO:0003844: 1,4-alpha-glucan branching enzyme activity6.50E-04
50GO:0008934: inositol monophosphate 1-phosphatase activity6.50E-04
51GO:0034722: gamma-glutamyl-peptidase activity6.50E-04
52GO:0052833: inositol monophosphate 4-phosphatase activity6.50E-04
53GO:0008967: phosphoglycolate phosphatase activity6.50E-04
54GO:0047746: chlorophyllase activity6.50E-04
55GO:0010297: heteropolysaccharide binding6.50E-04
56GO:0004617: phosphoglycerate dehydrogenase activity6.50E-04
57GO:0004177: aminopeptidase activity7.02E-04
58GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.05E-03
59GO:0043169: cation binding1.05E-03
60GO:0004373: glycogen (starch) synthase activity1.05E-03
61GO:0002161: aminoacyl-tRNA editing activity1.05E-03
62GO:0032947: protein complex scaffold1.05E-03
63GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.05E-03
64GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.05E-03
65GO:0070402: NADPH binding1.05E-03
66GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.05E-03
67GO:0008864: formyltetrahydrofolate deformylase activity1.05E-03
68GO:0051536: iron-sulfur cluster binding1.40E-03
69GO:0048487: beta-tubulin binding1.51E-03
70GO:0016149: translation release factor activity, codon specific1.51E-03
71GO:0008508: bile acid:sodium symporter activity1.51E-03
72GO:0015079: potassium ion transmembrane transporter activity1.55E-03
73GO:0008453: alanine-glyoxylate transaminase activity2.02E-03
74GO:0016987: sigma factor activity2.02E-03
75GO:0043495: protein anchor2.02E-03
76GO:0001053: plastid sigma factor activity2.02E-03
77GO:0051861: glycolipid binding2.02E-03
78GO:0051538: 3 iron, 4 sulfur cluster binding2.58E-03
79GO:0008168: methyltransferase activity2.61E-03
80GO:0003777: microtubule motor activity2.63E-03
81GO:0050662: coenzyme binding2.98E-03
82GO:0004332: fructose-bisphosphate aldolase activity3.19E-03
83GO:0004029: aldehyde dehydrogenase (NAD) activity3.19E-03
84GO:0004784: superoxide dismutase activity3.19E-03
85GO:0042578: phosphoric ester hydrolase activity3.19E-03
86GO:2001070: starch binding3.19E-03
87GO:0030983: mismatched DNA binding3.19E-03
88GO:0004849: uridine kinase activity3.84E-03
89GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.84E-03
90GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.84E-03
91GO:0008237: metallopeptidase activity4.40E-03
92GO:0008235: metalloexopeptidase activity4.53E-03
93GO:0019899: enzyme binding4.53E-03
94GO:0019843: rRNA binding4.82E-03
95GO:0046872: metal ion binding4.99E-03
96GO:0008312: 7S RNA binding5.26E-03
97GO:0043022: ribosome binding5.26E-03
98GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.03E-03
99GO:0008135: translation factor activity, RNA binding6.03E-03
100GO:0003824: catalytic activity6.04E-03
101GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.83E-03
102GO:0003747: translation release factor activity6.83E-03
103GO:0005381: iron ion transmembrane transporter activity7.67E-03
104GO:0047617: acyl-CoA hydrolase activity7.67E-03
105GO:0005384: manganese ion transmembrane transporter activity7.67E-03
106GO:0016844: strictosidine synthase activity7.67E-03
107GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.67E-03
108GO:0004519: endonuclease activity7.89E-03
109GO:0008047: enzyme activator activity8.55E-03
110GO:0015386: potassium:proton antiporter activity9.46E-03
111GO:0044183: protein binding involved in protein folding9.46E-03
112GO:0047372: acylglycerol lipase activity9.46E-03
113GO:0004089: carbonate dehydratase activity1.14E-02
114GO:0015095: magnesium ion transmembrane transporter activity1.14E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding1.14E-02
116GO:0005198: structural molecule activity1.19E-02
117GO:0008131: primary amine oxidase activity1.24E-02
118GO:0008266: poly(U) RNA binding1.24E-02
119GO:0051287: NAD binding1.28E-02
120GO:0016788: hydrolase activity, acting on ester bonds1.30E-02
121GO:0016887: ATPase activity1.35E-02
122GO:0031409: pigment binding1.45E-02
123GO:0005528: FK506 binding1.56E-02
124GO:0004857: enzyme inhibitor activity1.56E-02
125GO:0004407: histone deacetylase activity1.56E-02
126GO:0008233: peptidase activity1.63E-02
127GO:0043424: protein histidine kinase binding1.68E-02
128GO:0005215: transporter activity1.87E-02
129GO:0003756: protein disulfide isomerase activity2.16E-02
130GO:0016787: hydrolase activity2.19E-02
131GO:0047134: protein-disulfide reductase activity2.29E-02
132GO:0004812: aminoacyl-tRNA ligase activity2.29E-02
133GO:0004791: thioredoxin-disulfide reductase activity2.68E-02
134GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.25E-02
135GO:0003684: damaged DNA binding3.39E-02
136GO:0008017: microtubule binding3.68E-02
137GO:0016597: amino acid binding3.70E-02
138GO:0004721: phosphoprotein phosphatase activity4.32E-02
139GO:0008236: serine-type peptidase activity4.48E-02
140GO:0015238: drug transmembrane transporter activity4.81E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast1.58E-69
5GO:0009535: chloroplast thylakoid membrane7.00E-39
6GO:0009570: chloroplast stroma1.54E-27
7GO:0009941: chloroplast envelope4.00E-22
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.08E-16
9GO:0009534: chloroplast thylakoid2.72E-16
10GO:0009579: thylakoid7.11E-14
11GO:0009523: photosystem II8.38E-07
12GO:0009543: chloroplast thylakoid lumen9.57E-07
13GO:0031969: chloroplast membrane2.35E-05
14GO:0009654: photosystem II oxygen evolving complex1.24E-04
15GO:0009782: photosystem I antenna complex2.97E-04
16GO:0009344: nitrite reductase complex [NAD(P)H]2.97E-04
17GO:0009501: amyloplast2.98E-04
18GO:0010319: stromule5.29E-04
19GO:0048046: apoplast5.35E-04
20GO:0080085: signal recognition particle, chloroplast targeting6.50E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex6.50E-04
22GO:0010287: plastoglobule8.07E-04
23GO:0005623: cell9.11E-04
24GO:0030095: chloroplast photosystem II1.02E-03
25GO:0042651: thylakoid membrane1.55E-03
26GO:0005777: peroxisome1.64E-03
27GO:0009526: plastid envelope2.02E-03
28GO:0009517: PSII associated light-harvesting complex II2.02E-03
29GO:0030286: dynein complex2.02E-03
30GO:0005871: kinesin complex2.38E-03
31GO:0055035: plastid thylakoid membrane2.58E-03
32GO:0009512: cytochrome b6f complex2.58E-03
33GO:0019898: extrinsic component of membrane3.20E-03
34GO:0009706: chloroplast inner membrane3.62E-03
35GO:0031359: integral component of chloroplast outer membrane4.53E-03
36GO:0009533: chloroplast stromal thylakoid4.53E-03
37GO:0009539: photosystem II reaction center6.03E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.03E-03
39GO:0016020: membrane6.32E-03
40GO:0009707: chloroplast outer membrane6.45E-03
41GO:0031977: thylakoid lumen9.73E-03
42GO:0009508: plastid chromosome1.14E-02
43GO:0019013: viral nucleocapsid1.14E-02
44GO:0030076: light-harvesting complex1.34E-02
45GO:0005875: microtubule associated complex1.45E-02
46GO:0009532: plastid stroma1.79E-02
47GO:0016021: integral component of membrane2.02E-02
48GO:0009536: plastid2.23E-02
49GO:0009504: cell plate2.82E-02
50GO:0005694: chromosome3.10E-02
51GO:0009295: nucleoid3.55E-02
52GO:0030529: intracellular ribonucleoprotein complex3.85E-02
53GO:0005829: cytosol4.90E-02
<
Gene type



Gene DE type