GO Enrichment Analysis of Co-expressed Genes with
AT4G23060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034337: RNA folding | 0.00E+00 |
| 2 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 5 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 6 | GO:0042254: ribosome biogenesis | 5.97E-10 |
| 7 | GO:0006412: translation | 9.91E-09 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 2.85E-08 |
| 9 | GO:0015979: photosynthesis | 6.35E-08 |
| 10 | GO:0010027: thylakoid membrane organization | 1.14E-06 |
| 11 | GO:0009306: protein secretion | 1.19E-05 |
| 12 | GO:0009735: response to cytokinin | 1.27E-05 |
| 13 | GO:0010206: photosystem II repair | 6.04E-05 |
| 14 | GO:0000481: maturation of 5S rRNA | 7.75E-05 |
| 15 | GO:1902458: positive regulation of stomatal opening | 7.75E-05 |
| 16 | GO:0010207: photosystem II assembly | 1.60E-04 |
| 17 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.85E-04 |
| 18 | GO:0090391: granum assembly | 3.11E-04 |
| 19 | GO:0006518: peptide metabolic process | 3.11E-04 |
| 20 | GO:0071705: nitrogen compound transport | 3.11E-04 |
| 21 | GO:0000413: protein peptidyl-prolyl isomerization | 4.24E-04 |
| 22 | GO:0042335: cuticle development | 4.24E-04 |
| 23 | GO:0010731: protein glutathionylation | 4.49E-04 |
| 24 | GO:1901332: negative regulation of lateral root development | 4.49E-04 |
| 25 | GO:0051513: regulation of monopolar cell growth | 4.49E-04 |
| 26 | GO:0080170: hydrogen peroxide transmembrane transport | 4.49E-04 |
| 27 | GO:0030104: water homeostasis | 5.98E-04 |
| 28 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 5.98E-04 |
| 29 | GO:0071249: cellular response to nitrate | 5.98E-04 |
| 30 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.57E-04 |
| 31 | GO:0042549: photosystem II stabilization | 9.24E-04 |
| 32 | GO:1901259: chloroplast rRNA processing | 1.10E-03 |
| 33 | GO:0010196: nonphotochemical quenching | 1.29E-03 |
| 34 | GO:0006605: protein targeting | 1.48E-03 |
| 35 | GO:0032508: DNA duplex unwinding | 1.48E-03 |
| 36 | GO:2000070: regulation of response to water deprivation | 1.48E-03 |
| 37 | GO:0008610: lipid biosynthetic process | 1.48E-03 |
| 38 | GO:0048589: developmental growth | 1.91E-03 |
| 39 | GO:0009245: lipid A biosynthetic process | 1.91E-03 |
| 40 | GO:0010205: photoinhibition | 2.14E-03 |
| 41 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.14E-03 |
| 42 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.37E-03 |
| 43 | GO:0043085: positive regulation of catalytic activity | 2.61E-03 |
| 44 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.61E-03 |
| 45 | GO:0009773: photosynthetic electron transport in photosystem I | 2.61E-03 |
| 46 | GO:0015706: nitrate transport | 2.86E-03 |
| 47 | GO:0010152: pollen maturation | 2.86E-03 |
| 48 | GO:0006006: glucose metabolic process | 3.12E-03 |
| 49 | GO:0019253: reductive pentose-phosphate cycle | 3.38E-03 |
| 50 | GO:0010167: response to nitrate | 3.66E-03 |
| 51 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.94E-03 |
| 52 | GO:0000027: ribosomal large subunit assembly | 4.23E-03 |
| 53 | GO:0006633: fatty acid biosynthetic process | 4.89E-03 |
| 54 | GO:0048443: stamen development | 5.77E-03 |
| 55 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 6.10E-03 |
| 56 | GO:0034220: ion transmembrane transport | 6.44E-03 |
| 57 | GO:0006662: glycerol ether metabolic process | 6.78E-03 |
| 58 | GO:0009658: chloroplast organization | 8.30E-03 |
| 59 | GO:0030163: protein catabolic process | 8.59E-03 |
| 60 | GO:0016126: sterol biosynthetic process | 1.02E-02 |
| 61 | GO:0009627: systemic acquired resistance | 1.10E-02 |
| 62 | GO:0045454: cell redox homeostasis | 1.23E-02 |
| 63 | GO:0010311: lateral root formation | 1.27E-02 |
| 64 | GO:0034599: cellular response to oxidative stress | 1.49E-02 |
| 65 | GO:0030001: metal ion transport | 1.59E-02 |
| 66 | GO:0008152: metabolic process | 1.68E-02 |
| 67 | GO:0009409: response to cold | 1.87E-02 |
| 68 | GO:0006855: drug transmembrane transport | 1.93E-02 |
| 69 | GO:0006096: glycolytic process | 2.41E-02 |
| 70 | GO:0009416: response to light stimulus | 2.71E-02 |
| 71 | GO:0009742: brassinosteroid mediated signaling pathway | 2.87E-02 |
| 72 | GO:0009737: response to abscisic acid | 3.29E-02 |
| 73 | GO:0006457: protein folding | 3.50E-02 |
| 74 | GO:0009790: embryo development | 3.61E-02 |
| 75 | GO:0009793: embryo development ending in seed dormancy | 3.64E-02 |
| 76 | GO:0040008: regulation of growth | 3.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 4 | GO:0003735: structural constituent of ribosome | 5.11E-10 |
| 5 | GO:0019843: rRNA binding | 1.14E-09 |
| 6 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.57E-09 |
| 7 | GO:0016851: magnesium chelatase activity | 4.61E-09 |
| 8 | GO:0005528: FK506 binding | 5.82E-08 |
| 9 | GO:0004163: diphosphomevalonate decarboxylase activity | 7.75E-05 |
| 10 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 7.75E-05 |
| 11 | GO:0045485: omega-6 fatty acid desaturase activity | 7.75E-05 |
| 12 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.85E-04 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.85E-04 |
| 14 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 3.11E-04 |
| 15 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.11E-04 |
| 16 | GO:0008097: 5S rRNA binding | 4.49E-04 |
| 17 | GO:0010011: auxin binding | 5.98E-04 |
| 18 | GO:0052793: pectin acetylesterase activity | 5.98E-04 |
| 19 | GO:0004040: amidase activity | 7.57E-04 |
| 20 | GO:0031177: phosphopantetheine binding | 9.24E-04 |
| 21 | GO:0008236: serine-type peptidase activity | 9.80E-04 |
| 22 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.03E-03 |
| 23 | GO:0004017: adenylate kinase activity | 1.10E-03 |
| 24 | GO:0000035: acyl binding | 1.10E-03 |
| 25 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.48E-03 |
| 26 | GO:0008047: enzyme activator activity | 2.37E-03 |
| 27 | GO:0031072: heat shock protein binding | 3.12E-03 |
| 28 | GO:0004252: serine-type endopeptidase activity | 4.33E-03 |
| 29 | GO:0003756: protein disulfide isomerase activity | 5.77E-03 |
| 30 | GO:0047134: protein-disulfide reductase activity | 6.10E-03 |
| 31 | GO:0008080: N-acetyltransferase activity | 6.78E-03 |
| 32 | GO:0004791: thioredoxin-disulfide reductase activity | 7.13E-03 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 8.46E-03 |
| 34 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.59E-03 |
| 35 | GO:0015250: water channel activity | 1.02E-02 |
| 36 | GO:0052689: carboxylic ester hydrolase activity | 1.14E-02 |
| 37 | GO:0004222: metalloendopeptidase activity | 1.31E-02 |
| 38 | GO:0050661: NADP binding | 1.59E-02 |
| 39 | GO:0004364: glutathione transferase activity | 1.68E-02 |
| 40 | GO:0051287: NAD binding | 1.98E-02 |
| 41 | GO:0003729: mRNA binding | 2.10E-02 |
| 42 | GO:0016887: ATPase activity | 2.37E-02 |
| 43 | GO:0004650: polygalacturonase activity | 2.58E-02 |
| 44 | GO:0051082: unfolded protein binding | 2.75E-02 |
| 45 | GO:0015035: protein disulfide oxidoreductase activity | 2.81E-02 |
| 46 | GO:0016787: hydrolase activity | 3.31E-02 |
| 47 | GO:0016829: lyase activity | 3.42E-02 |
| 48 | GO:0005516: calmodulin binding | 4.07E-02 |
| 49 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.81E-02 |
| 50 | GO:0042802: identical protein binding | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 4.74E-31 |
| 4 | GO:0009507: chloroplast | 7.78E-30 |
| 5 | GO:0009941: chloroplast envelope | 6.31E-20 |
| 6 | GO:0009534: chloroplast thylakoid | 3.50E-19 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 7.21E-19 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 6.55E-15 |
| 9 | GO:0009579: thylakoid | 1.52E-14 |
| 10 | GO:0005840: ribosome | 1.31E-11 |
| 11 | GO:0031977: thylakoid lumen | 3.10E-11 |
| 12 | GO:0010007: magnesium chelatase complex | 9.39E-10 |
| 13 | GO:0009515: granal stacked thylakoid | 7.75E-05 |
| 14 | GO:0043674: columella | 7.75E-05 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 7.75E-05 |
| 16 | GO:0032040: small-subunit processome | 1.22E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 1.60E-04 |
| 18 | GO:0030093: chloroplast photosystem I | 1.85E-04 |
| 19 | GO:0033281: TAT protein transport complex | 3.11E-04 |
| 20 | GO:0009295: nucleoid | 7.15E-04 |
| 21 | GO:0042807: central vacuole | 1.29E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 1.29E-03 |
| 23 | GO:0009538: photosystem I reaction center | 1.48E-03 |
| 24 | GO:0009508: plastid chromosome | 3.12E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 3.12E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 4.52E-03 |
| 27 | GO:0015935: small ribosomal subunit | 4.82E-03 |
| 28 | GO:0009522: photosystem I | 7.13E-03 |
| 29 | GO:0009523: photosystem II | 7.49E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 7.49E-03 |
| 31 | GO:0016020: membrane | 2.52E-02 |
| 32 | GO:0009705: plant-type vacuole membrane | 4.06E-02 |