Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G21280

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0045014: negative regulation of transcription by glucose0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0033494: ferulate metabolic process0.00E+00
11GO:0015805: S-adenosyl-L-methionine transport0.00E+00
12GO:0042493: response to drug0.00E+00
13GO:0042371: vitamin K biosynthetic process0.00E+00
14GO:0006412: translation9.33E-19
15GO:0032544: plastid translation6.01E-14
16GO:0009735: response to cytokinin1.43E-11
17GO:0015979: photosynthesis2.40E-11
18GO:0042254: ribosome biogenesis5.79E-11
19GO:0015995: chlorophyll biosynthetic process1.10E-08
20GO:0090391: granum assembly4.67E-08
21GO:0010207: photosystem II assembly5.78E-08
22GO:0010027: thylakoid membrane organization5.28E-06
23GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.49E-05
24GO:0010206: photosystem II repair2.33E-05
25GO:0009828: plant-type cell wall loosening6.41E-05
26GO:0010236: plastoquinone biosynthetic process1.21E-04
27GO:0009658: chloroplast organization1.84E-04
28GO:0042372: phylloquinone biosynthetic process2.36E-04
29GO:0017148: negative regulation of translation2.36E-04
30GO:0009411: response to UV2.62E-04
31GO:0009772: photosynthetic electron transport in photosystem II3.06E-04
32GO:0010196: nonphotochemical quenching3.06E-04
33GO:0009734: auxin-activated signaling pathway3.39E-04
34GO:1902458: positive regulation of stomatal opening3.52E-04
35GO:0034337: RNA folding3.52E-04
36GO:0071588: hydrogen peroxide mediated signaling pathway3.52E-04
37GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.52E-04
38GO:0043489: RNA stabilization3.52E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process3.52E-04
40GO:0000481: maturation of 5S rRNA3.52E-04
41GO:1904964: positive regulation of phytol biosynthetic process3.52E-04
42GO:0042759: long-chain fatty acid biosynthetic process3.52E-04
43GO:0042335: cuticle development3.63E-04
44GO:0009958: positive gravitropism4.01E-04
45GO:0009664: plant-type cell wall organization4.78E-04
46GO:0006729: tetrahydrobiopterin biosynthetic process7.67E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process7.67E-04
48GO:0006568: tryptophan metabolic process7.67E-04
49GO:0010024: phytochromobilin biosynthetic process7.67E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process7.67E-04
51GO:0010541: acropetal auxin transport7.67E-04
52GO:0001736: establishment of planar polarity7.67E-04
53GO:0048829: root cap development7.77E-04
54GO:0006949: syncytium formation7.77E-04
55GO:0043085: positive regulation of catalytic activity8.95E-04
56GO:0009773: photosynthetic electron transport in photosystem I8.95E-04
57GO:0016024: CDP-diacylglycerol biosynthetic process1.02E-03
58GO:0006006: glucose metabolic process1.16E-03
59GO:0006518: peptide metabolic process1.24E-03
60GO:0010581: regulation of starch biosynthetic process1.24E-03
61GO:0006788: heme oxidation1.24E-03
62GO:0080055: low-affinity nitrate transport1.24E-03
63GO:0010160: formation of animal organ boundary1.24E-03
64GO:0071492: cellular response to UV-A1.24E-03
65GO:0015840: urea transport1.24E-03
66GO:0010143: cutin biosynthetic process1.30E-03
67GO:0006833: water transport1.62E-03
68GO:0071484: cellular response to light intensity1.79E-03
69GO:0009102: biotin biosynthetic process1.79E-03
70GO:0051085: chaperone mediated protein folding requiring cofactor1.79E-03
71GO:0051639: actin filament network formation1.79E-03
72GO:0009650: UV protection1.79E-03
73GO:0006241: CTP biosynthetic process1.79E-03
74GO:0043481: anthocyanin accumulation in tissues in response to UV light1.79E-03
75GO:0006424: glutamyl-tRNA aminoacylation1.79E-03
76GO:1901332: negative regulation of lateral root development1.79E-03
77GO:0006165: nucleoside diphosphate phosphorylation1.79E-03
78GO:0006228: UTP biosynthetic process1.79E-03
79GO:0006986: response to unfolded protein1.79E-03
80GO:0055070: copper ion homeostasis1.79E-03
81GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.79E-03
82GO:2001141: regulation of RNA biosynthetic process1.79E-03
83GO:0009926: auxin polar transport2.18E-03
84GO:0031408: oxylipin biosynthetic process2.18E-03
85GO:0003333: amino acid transmembrane transport2.18E-03
86GO:0071486: cellular response to high light intensity2.40E-03
87GO:0051764: actin crosslink formation2.40E-03
88GO:0006183: GTP biosynthetic process2.40E-03
89GO:0022622: root system development2.40E-03
90GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.40E-03
91GO:0044206: UMP salvage2.40E-03
92GO:0048443: stamen development2.82E-03
93GO:0031365: N-terminal protein amino acid modification3.07E-03
94GO:0000304: response to singlet oxygen3.07E-03
95GO:0032543: mitochondrial translation3.07E-03
96GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
97GO:0043097: pyrimidine nucleoside salvage3.07E-03
98GO:0000413: protein peptidyl-prolyl isomerization3.31E-03
99GO:0009733: response to auxin3.49E-03
100GO:0042549: photosystem II stabilization3.79E-03
101GO:0006655: phosphatidylglycerol biosynthetic process3.79E-03
102GO:0060918: auxin transport3.79E-03
103GO:0006206: pyrimidine nucleobase metabolic process3.79E-03
104GO:0009826: unidimensional cell growth3.85E-03
105GO:0010019: chloroplast-nucleus signaling pathway4.57E-03
106GO:0009955: adaxial/abaxial pattern specification4.57E-03
107GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.57E-03
108GO:1901259: chloroplast rRNA processing4.57E-03
109GO:0010189: vitamin E biosynthetic process4.57E-03
110GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
111GO:0032880: regulation of protein localization5.40E-03
112GO:0009610: response to symbiotic fungus5.40E-03
113GO:0048564: photosystem I assembly6.27E-03
114GO:0008610: lipid biosynthetic process6.27E-03
115GO:0006605: protein targeting6.27E-03
116GO:0032508: DNA duplex unwinding6.27E-03
117GO:0046620: regulation of organ growth6.27E-03
118GO:2000070: regulation of response to water deprivation6.27E-03
119GO:0071482: cellular response to light stimulus7.19E-03
120GO:0015996: chlorophyll catabolic process7.19E-03
121GO:0019430: removal of superoxide radicals7.19E-03
122GO:0007186: G-protein coupled receptor signaling pathway7.19E-03
123GO:0006526: arginine biosynthetic process7.19E-03
124GO:0045454: cell redox homeostasis7.44E-03
125GO:0009051: pentose-phosphate shunt, oxidative branch8.16E-03
126GO:0009245: lipid A biosynthetic process8.16E-03
127GO:0048589: developmental growth8.16E-03
128GO:0006869: lipid transport8.56E-03
129GO:0010311: lateral root formation8.75E-03
130GO:0006633: fatty acid biosynthetic process8.91E-03
131GO:0010205: photoinhibition9.17E-03
132GO:0006779: porphyrin-containing compound biosynthetic process9.17E-03
133GO:0010380: regulation of chlorophyll biosynthetic process9.17E-03
134GO:0048527: lateral root development9.64E-03
135GO:0009631: cold acclimation9.64E-03
136GO:0045490: pectin catabolic process1.01E-02
137GO:0006865: amino acid transport1.01E-02
138GO:0045036: protein targeting to chloroplast1.02E-02
139GO:0006535: cysteine biosynthetic process from serine1.02E-02
140GO:0006782: protoporphyrinogen IX biosynthetic process1.02E-02
141GO:0009637: response to blue light1.06E-02
142GO:0055085: transmembrane transport1.10E-02
143GO:0034599: cellular response to oxidative stress1.11E-02
144GO:0048765: root hair cell differentiation1.13E-02
145GO:0010015: root morphogenesis1.13E-02
146GO:0006352: DNA-templated transcription, initiation1.13E-02
147GO:0030001: metal ion transport1.21E-02
148GO:0008361: regulation of cell size1.25E-02
149GO:0010152: pollen maturation1.25E-02
150GO:0045037: protein import into chloroplast stroma1.25E-02
151GO:0010114: response to red light1.37E-02
152GO:2000012: regulation of auxin polar transport1.37E-02
153GO:0009409: response to cold1.49E-02
154GO:0010540: basipetal auxin transport1.49E-02
155GO:0019253: reductive pentose-phosphate cycle1.49E-02
156GO:0046688: response to copper ion1.61E-02
157GO:0009793: embryo development ending in seed dormancy1.64E-02
158GO:0010025: wax biosynthetic process1.74E-02
159GO:0006636: unsaturated fatty acid biosynthetic process1.74E-02
160GO:0019344: cysteine biosynthetic process1.88E-02
161GO:0009116: nucleoside metabolic process1.88E-02
162GO:0000027: ribosomal large subunit assembly1.88E-02
163GO:0051017: actin filament bundle assembly1.88E-02
164GO:0061077: chaperone-mediated protein folding2.15E-02
165GO:0080167: response to karrikin2.30E-02
166GO:0009306: protein secretion2.59E-02
167GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.74E-02
168GO:0008284: positive regulation of cell proliferation2.74E-02
169GO:0080022: primary root development2.90E-02
170GO:0034220: ion transmembrane transport2.90E-02
171GO:0010182: sugar mediated signaling pathway3.06E-02
172GO:0006520: cellular amino acid metabolic process3.06E-02
173GO:0006662: glycerol ether metabolic process3.06E-02
174GO:0007018: microtubule-based movement3.22E-02
175GO:0015986: ATP synthesis coupled proton transport3.22E-02
176GO:0009737: response to abscisic acid3.49E-02
177GO:0006457: protein folding3.53E-02
178GO:0032259: methylation3.54E-02
179GO:0000302: response to reactive oxygen species3.55E-02
180GO:0002229: defense response to oomycetes3.55E-02
181GO:0032502: developmental process3.72E-02
182GO:0009630: gravitropism3.72E-02
183GO:0042744: hydrogen peroxide catabolic process3.75E-02
184GO:0009790: embryo development3.84E-02
185GO:0030163: protein catabolic process3.90E-02
186GO:0009567: double fertilization forming a zygote and endosperm4.07E-02
187GO:0009639: response to red or far red light4.07E-02
188GO:0040008: regulation of growth4.33E-02
189GO:0016126: sterol biosynthetic process4.62E-02
190GO:0009451: RNA modification4.63E-02
191GO:0009627: systemic acquired resistance4.99E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0019843: rRNA binding2.20E-22
15GO:0003735: structural constituent of ribosome3.07E-21
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.61E-10
17GO:0005528: FK506 binding2.61E-09
18GO:0016851: magnesium chelatase activity2.26E-07
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.97E-05
20GO:0043023: ribosomal large subunit binding4.34E-05
21GO:0010011: auxin binding7.72E-05
22GO:0010328: auxin influx transmembrane transporter activity7.72E-05
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.52E-04
24GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.52E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.52E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity3.52E-04
27GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.52E-04
28GO:0015200: methylammonium transmembrane transporter activity3.52E-04
29GO:0004163: diphosphomevalonate decarboxylase activity3.52E-04
30GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.52E-04
31GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.67E-04
32GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.67E-04
33GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.67E-04
34GO:0008047: enzyme activator activity7.77E-04
35GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.24E-03
36GO:0080054: low-affinity nitrate transmembrane transporter activity1.24E-03
37GO:0050734: hydroxycinnamoyltransferase activity1.24E-03
38GO:0008266: poly(U) RNA binding1.30E-03
39GO:0008097: 5S rRNA binding1.79E-03
40GO:0004550: nucleoside diphosphate kinase activity1.79E-03
41GO:0004659: prenyltransferase activity2.40E-03
42GO:0001053: plastid sigma factor activity2.40E-03
43GO:0004845: uracil phosphoribosyltransferase activity2.40E-03
44GO:0004345: glucose-6-phosphate dehydrogenase activity2.40E-03
45GO:0016836: hydro-lyase activity2.40E-03
46GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.40E-03
47GO:0016987: sigma factor activity2.40E-03
48GO:0052793: pectin acetylesterase activity2.40E-03
49GO:0043495: protein anchor2.40E-03
50GO:0004392: heme oxygenase (decyclizing) activity2.40E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.40E-03
52GO:0015204: urea transmembrane transporter activity2.40E-03
53GO:0022891: substrate-specific transmembrane transporter activity2.60E-03
54GO:0030570: pectate lyase activity2.60E-03
55GO:0004040: amidase activity3.07E-03
56GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.79E-03
57GO:0008519: ammonium transmembrane transporter activity3.79E-03
58GO:0031177: phosphopantetheine binding3.79E-03
59GO:0016208: AMP binding3.79E-03
60GO:0004130: cytochrome-c peroxidase activity3.79E-03
61GO:0016688: L-ascorbate peroxidase activity3.79E-03
62GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.79E-03
63GO:0004791: thioredoxin-disulfide reductase activity3.83E-03
64GO:0004124: cysteine synthase activity4.57E-03
65GO:0051920: peroxiredoxin activity4.57E-03
66GO:0004017: adenylate kinase activity4.57E-03
67GO:0004849: uridine kinase activity4.57E-03
68GO:0000035: acyl binding4.57E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.01E-03
70GO:0008235: metalloexopeptidase activity5.40E-03
71GO:0019899: enzyme binding5.40E-03
72GO:0016209: antioxidant activity6.27E-03
73GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.27E-03
74GO:0015250: water channel activity6.37E-03
75GO:0016168: chlorophyll binding6.74E-03
76GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.19E-03
77GO:0016829: lyase activity7.37E-03
78GO:0008236: serine-type peptidase activity7.91E-03
79GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.33E-03
80GO:0003993: acid phosphatase activity1.11E-02
81GO:0004177: aminopeptidase activity1.13E-02
82GO:0050661: NADP binding1.21E-02
83GO:0005507: copper ion binding1.34E-02
84GO:0042802: identical protein binding1.36E-02
85GO:0031072: heat shock protein binding1.37E-02
86GO:0010329: auxin efflux transmembrane transporter activity1.37E-02
87GO:0008083: growth factor activity1.49E-02
88GO:0015293: symporter activity1.54E-02
89GO:0051287: NAD binding1.66E-02
90GO:0008289: lipid binding1.68E-02
91GO:0016788: hydrolase activity, acting on ester bonds1.79E-02
92GO:0051087: chaperone binding2.01E-02
93GO:0015171: amino acid transmembrane transporter activity2.05E-02
94GO:0005509: calcium ion binding2.13E-02
95GO:0004707: MAP kinase activity2.15E-02
96GO:0003723: RNA binding2.25E-02
97GO:0003756: protein disulfide isomerase activity2.59E-02
98GO:0052689: carboxylic ester hydrolase activity2.61E-02
99GO:0051082: unfolded protein binding2.63E-02
100GO:0016746: transferase activity, transferring acyl groups2.71E-02
101GO:0047134: protein-disulfide reductase activity2.74E-02
102GO:0008080: N-acetyltransferase activity3.06E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.06E-02
104GO:0016740: transferase activity3.24E-02
105GO:0004252: serine-type endopeptidase activity3.65E-02
106GO:0030170: pyridoxal phosphate binding3.65E-02
107GO:0016491: oxidoreductase activity3.85E-02
108GO:0051015: actin filament binding3.90E-02
109GO:0016791: phosphatase activity4.07E-02
110GO:0008483: transaminase activity4.25E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009570: chloroplast stroma4.84E-67
6GO:0009507: chloroplast3.42E-64
7GO:0009941: chloroplast envelope1.75E-50
8GO:0009579: thylakoid7.35E-39
9GO:0009535: chloroplast thylakoid membrane3.31E-35
10GO:0009543: chloroplast thylakoid lumen1.60E-27
11GO:0009534: chloroplast thylakoid5.28E-27
12GO:0031977: thylakoid lumen9.91E-23
13GO:0005840: ribosome3.24E-21
14GO:0010007: magnesium chelatase complex4.67E-08
15GO:0009654: photosystem II oxygen evolving complex2.05E-07
16GO:0016020: membrane8.19E-07
17GO:0019898: extrinsic component of membrane1.63E-06
18GO:0030095: chloroplast photosystem II3.12E-06
19GO:0031969: chloroplast membrane5.97E-06
20GO:0000311: plastid large ribosomal subunit6.40E-05
21GO:0009536: plastid1.25E-04
22GO:0009505: plant-type cell wall1.34E-04
23GO:0009547: plastid ribosome3.52E-04
24GO:0009523: photosystem II4.83E-04
25GO:0010319: stromule7.28E-04
26GO:0030093: chloroplast photosystem I7.67E-04
27GO:0009528: plastid inner membrane1.24E-03
28GO:0009509: chromoplast1.24E-03
29GO:0000312: plastid small ribosomal subunit1.30E-03
30GO:0015934: large ribosomal subunit1.40E-03
31GO:0032432: actin filament bundle1.79E-03
32GO:0015935: small ribosomal subunit2.18E-03
33GO:0009527: plastid outer membrane2.40E-03
34GO:0055035: plastid thylakoid membrane3.07E-03
35GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.79E-03
36GO:0009986: cell surface5.40E-03
37GO:0009533: chloroplast stromal thylakoid5.40E-03
38GO:0042807: central vacuole5.40E-03
39GO:0009295: nucleoid5.67E-03
40GO:0009538: photosystem I reaction center6.27E-03
41GO:0000326: protein storage vacuole7.19E-03
42GO:0005763: mitochondrial small ribosomal subunit8.16E-03
43GO:0008180: COP9 signalosome8.16E-03
44GO:0009707: chloroplast outer membrane8.33E-03
45GO:0005618: cell wall9.17E-03
46GO:0005884: actin filament1.13E-02
47GO:0032040: small-subunit processome1.25E-02
48GO:0009508: plastid chromosome1.37E-02
49GO:0043234: protein complex1.74E-02
50GO:0042651: thylakoid membrane2.01E-02
51GO:0009532: plastid stroma2.15E-02
52GO:0022625: cytosolic large ribosomal subunit2.45E-02
53GO:0009706: chloroplast inner membrane2.63E-02
54GO:0005871: kinesin complex2.74E-02
55GO:0005777: peroxisome2.96E-02
56GO:0010287: plastoglobule3.12E-02
57GO:0005778: peroxisomal membrane4.25E-02
58GO:0031225: anchored component of membrane4.62E-02
59GO:0030529: intracellular ribonucleoprotein complex4.62E-02
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Gene type



Gene DE type