Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G19830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:0034337: RNA folding0.00E+00
4GO:2000505: regulation of energy homeostasis0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0015805: S-adenosyl-L-methionine transport0.00E+00
13GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
14GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
15GO:0042254: ribosome biogenesis8.99E-11
16GO:0006412: translation1.72E-10
17GO:0032544: plastid translation9.61E-09
18GO:0015979: photosynthesis1.01E-06
19GO:0015995: chlorophyll biosynthetic process1.79E-06
20GO:0010207: photosystem II assembly9.94E-06
21GO:0009658: chloroplast organization1.89E-05
22GO:0010027: thylakoid membrane organization2.01E-05
23GO:0009735: response to cytokinin2.41E-05
24GO:0010206: photosystem II repair5.50E-05
25GO:0009773: photosynthetic electron transport in photosystem I1.16E-04
26GO:0016024: CDP-diacylglycerol biosynthetic process1.43E-04
27GO:0006655: phosphatidylglycerol biosynthetic process3.06E-04
28GO:0042372: phylloquinone biosynthetic process4.08E-04
29GO:1901259: chloroplast rRNA processing4.08E-04
30GO:0000481: maturation of 5S rRNA5.06E-04
31GO:1904964: positive regulation of phytol biosynthetic process5.06E-04
32GO:0042759: long-chain fatty acid biosynthetic process5.06E-04
33GO:0043686: co-translational protein modification5.06E-04
34GO:1902458: positive regulation of stomatal opening5.06E-04
35GO:0071588: hydrogen peroxide mediated signaling pathway5.06E-04
36GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.06E-04
37GO:0043489: RNA stabilization5.06E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process5.06E-04
39GO:0009772: photosynthetic electron transport in photosystem II5.24E-04
40GO:0008610: lipid biosynthetic process6.54E-04
41GO:0006353: DNA-templated transcription, termination6.54E-04
42GO:0000413: protein peptidyl-prolyl isomerization7.25E-04
43GO:0006729: tetrahydrobiopterin biosynthetic process1.09E-03
44GO:1903426: regulation of reactive oxygen species biosynthetic process1.09E-03
45GO:0010289: homogalacturonan biosynthetic process1.09E-03
46GO:0010275: NAD(P)H dehydrogenase complex assembly1.09E-03
47GO:0043255: regulation of carbohydrate biosynthetic process1.09E-03
48GO:0010115: regulation of abscisic acid biosynthetic process1.09E-03
49GO:1902326: positive regulation of chlorophyll biosynthetic process1.09E-03
50GO:0010541: acropetal auxin transport1.09E-03
51GO:0010205: photoinhibition1.12E-03
52GO:0018119: peptidyl-cysteine S-nitrosylation1.51E-03
53GO:0090391: granum assembly1.78E-03
54GO:0006518: peptide metabolic process1.78E-03
55GO:0010160: formation of animal organ boundary1.78E-03
56GO:0006006: glucose metabolic process1.96E-03
57GO:0055070: copper ion homeostasis2.58E-03
58GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.58E-03
59GO:0006166: purine ribonucleoside salvage2.58E-03
60GO:0051513: regulation of monopolar cell growth2.58E-03
61GO:0071484: cellular response to light intensity2.58E-03
62GO:0051639: actin filament network formation2.58E-03
63GO:0010239: chloroplast mRNA processing2.58E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch2.58E-03
65GO:0009650: UV protection2.58E-03
66GO:0080170: hydrogen peroxide transmembrane transport2.58E-03
67GO:0043481: anthocyanin accumulation in tissues in response to UV light2.58E-03
68GO:0006424: glutamyl-tRNA aminoacylation2.58E-03
69GO:1901332: negative regulation of lateral root development2.58E-03
70GO:0006168: adenine salvage2.58E-03
71GO:0010025: wax biosynthetic process2.77E-03
72GO:0006636: unsaturated fatty acid biosynthetic process2.77E-03
73GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway3.48E-03
74GO:0006808: regulation of nitrogen utilization3.48E-03
75GO:0051764: actin crosslink formation3.48E-03
76GO:0006183: GTP biosynthetic process3.48E-03
77GO:0045727: positive regulation of translation3.48E-03
78GO:0030104: water homeostasis3.48E-03
79GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.71E-03
80GO:0030001: metal ion transport3.73E-03
81GO:0006564: L-serine biosynthetic process4.46E-03
82GO:0010236: plastoquinone biosynthetic process4.46E-03
83GO:0045038: protein import into chloroplast thylakoid membrane4.46E-03
84GO:0031365: N-terminal protein amino acid modification4.46E-03
85GO:0035434: copper ion transmembrane transport4.46E-03
86GO:0016123: xanthophyll biosynthetic process4.46E-03
87GO:0044209: AMP salvage4.46E-03
88GO:0016120: carotene biosynthetic process4.46E-03
89GO:0032543: mitochondrial translation4.46E-03
90GO:0009306: protein secretion4.86E-03
91GO:0048443: stamen development4.86E-03
92GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.27E-03
93GO:0006561: proline biosynthetic process5.53E-03
94GO:0010405: arabinogalactan protein metabolic process5.53E-03
95GO:0006751: glutathione catabolic process5.53E-03
96GO:0042549: photosystem II stabilization5.53E-03
97GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.53E-03
98GO:0060918: auxin transport5.53E-03
99GO:0010190: cytochrome b6f complex assembly5.53E-03
100GO:0010337: regulation of salicylic acid metabolic process5.53E-03
101GO:0032973: amino acid export5.53E-03
102GO:0018258: protein O-linked glycosylation via hydroxyproline5.53E-03
103GO:0035435: phosphate ion transmembrane transport5.53E-03
104GO:0034220: ion transmembrane transport5.70E-03
105GO:0042335: cuticle development5.70E-03
106GO:0010182: sugar mediated signaling pathway6.15E-03
107GO:0016042: lipid catabolic process6.59E-03
108GO:0009854: oxidative photosynthetic carbon pathway6.67E-03
109GO:0010019: chloroplast-nucleus signaling pathway6.67E-03
110GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.67E-03
111GO:0017148: negative regulation of translation6.67E-03
112GO:0006400: tRNA modification7.90E-03
113GO:0009610: response to symbiotic fungus7.90E-03
114GO:0043090: amino acid import7.90E-03
115GO:0010196: nonphotochemical quenching7.90E-03
116GO:1900057: positive regulation of leaf senescence7.90E-03
117GO:0010444: guard mother cell differentiation7.90E-03
118GO:0032508: DNA duplex unwinding9.20E-03
119GO:2000070: regulation of response to water deprivation9.20E-03
120GO:0048564: photosystem I assembly9.20E-03
121GO:0030091: protein repair9.20E-03
122GO:0042255: ribosome assembly9.20E-03
123GO:0006605: protein targeting9.20E-03
124GO:0046620: regulation of organ growth9.20E-03
125GO:0006526: arginine biosynthetic process1.06E-02
126GO:0015996: chlorophyll catabolic process1.06E-02
127GO:0007186: G-protein coupled receptor signaling pathway1.06E-02
128GO:0016126: sterol biosynthetic process1.10E-02
129GO:0009733: response to auxin1.14E-02
130GO:0048589: developmental growth1.20E-02
131GO:0009051: pentose-phosphate shunt, oxidative branch1.20E-02
132GO:0080144: amino acid homeostasis1.20E-02
133GO:0006779: porphyrin-containing compound biosynthetic process1.35E-02
134GO:0018298: protein-chromophore linkage1.45E-02
135GO:0009688: abscisic acid biosynthetic process1.51E-02
136GO:0043069: negative regulation of programmed cell death1.51E-02
137GO:0006782: protoporphyrinogen IX biosynthetic process1.51E-02
138GO:0006535: cysteine biosynthetic process from serine1.51E-02
139GO:0006032: chitin catabolic process1.51E-02
140GO:0009790: embryo development1.63E-02
141GO:0009750: response to fructose1.67E-02
142GO:0009073: aromatic amino acid family biosynthetic process1.67E-02
143GO:0043085: positive regulation of catalytic activity1.67E-02
144GO:0009631: cold acclimation1.67E-02
145GO:1903507: negative regulation of nucleic acid-templated transcription1.67E-02
146GO:0008361: regulation of cell size1.84E-02
147GO:0010152: pollen maturation1.84E-02
148GO:0045037: protein import into chloroplast stroma1.84E-02
149GO:0016051: carbohydrate biosynthetic process1.84E-02
150GO:0034599: cellular response to oxidative stress1.92E-02
151GO:0006869: lipid transport1.96E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process2.02E-02
153GO:0009725: response to hormone2.02E-02
154GO:0009767: photosynthetic electron transport chain2.02E-02
155GO:0010588: cotyledon vascular tissue pattern formation2.02E-02
156GO:0010102: lateral root morphogenesis2.02E-02
157GO:0019253: reductive pentose-phosphate cycle2.20E-02
158GO:0010540: basipetal auxin transport2.20E-02
159GO:0010143: cutin biosynthetic process2.20E-02
160GO:0009926: auxin polar transport2.37E-02
161GO:0010030: positive regulation of seed germination2.38E-02
162GO:0010053: root epidermal cell differentiation2.38E-02
163GO:0009825: multidimensional cell growth2.38E-02
164GO:0010167: response to nitrate2.38E-02
165GO:0006833: water transport2.58E-02
166GO:0051017: actin filament bundle assembly2.77E-02
167GO:0006855: drug transmembrane transport2.77E-02
168GO:0019344: cysteine biosynthetic process2.77E-02
169GO:0000027: ribosomal large subunit assembly2.77E-02
170GO:0055085: transmembrane transport2.80E-02
171GO:0006457: protein folding2.89E-02
172GO:0016998: cell wall macromolecule catabolic process3.18E-02
173GO:0061077: chaperone-mediated protein folding3.18E-02
174GO:0031408: oxylipin biosynthetic process3.18E-02
175GO:0006364: rRNA processing3.20E-02
176GO:2000022: regulation of jasmonic acid mediated signaling pathway3.40E-02
177GO:0009411: response to UV3.61E-02
178GO:0042127: regulation of cell proliferation3.83E-02
179GO:0009734: auxin-activated signaling pathway3.85E-02
180GO:0080022: primary root development4.29E-02
181GO:0008033: tRNA processing4.29E-02
182GO:0010087: phloem or xylem histogenesis4.29E-02
183GO:0042631: cellular response to water deprivation4.29E-02
184GO:0010305: leaf vascular tissue pattern formation4.53E-02
185GO:0006662: glycerol ether metabolic process4.53E-02
186GO:0009958: positive gravitropism4.53E-02
187GO:0006520: cellular amino acid metabolic process4.53E-02
188GO:0015986: ATP synthesis coupled proton transport4.76E-02
189GO:0006810: transport4.82E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
4GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
14GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
15GO:0019843: rRNA binding2.84E-20
16GO:0003735: structural constituent of ribosome3.01E-12
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.55E-12
18GO:0005528: FK506 binding1.48E-08
19GO:0016851: magnesium chelatase activity6.05E-07
20GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor3.81E-05
21GO:0043023: ribosomal large subunit binding8.16E-05
22GO:0001872: (1->3)-beta-D-glucan binding8.16E-05
23GO:0008266: poly(U) RNA binding2.05E-04
24GO:0052689: carboxylic ester hydrolase activity2.76E-04
25GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.06E-04
26GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.06E-04
27GO:0004163: diphosphomevalonate decarboxylase activity5.06E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.06E-04
29GO:0080132: fatty acid alpha-hydroxylase activity5.06E-04
30GO:0042586: peptide deformylase activity5.06E-04
31GO:0005080: protein kinase C binding5.06E-04
32GO:0045485: omega-6 fatty acid desaturase activity5.06E-04
33GO:0016788: hydrolase activity, acting on ester bonds6.14E-04
34GO:0003839: gamma-glutamylcyclotransferase activity1.09E-03
35GO:0004617: phosphoglycerate dehydrogenase activity1.09E-03
36GO:0003938: IMP dehydrogenase activity1.09E-03
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.09E-03
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.09E-03
39GO:0004751: ribose-5-phosphate isomerase activity1.78E-03
40GO:0016531: copper chaperone activity1.78E-03
41GO:0019829: cation-transporting ATPase activity1.78E-03
42GO:0017150: tRNA dihydrouridine synthase activity1.78E-03
43GO:0030247: polysaccharide binding2.04E-03
44GO:0008097: 5S rRNA binding2.58E-03
45GO:0003999: adenine phosphoribosyltransferase activity2.58E-03
46GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.48E-03
47GO:0004659: prenyltransferase activity3.48E-03
48GO:0010011: auxin binding3.48E-03
49GO:0004345: glucose-6-phosphate dehydrogenase activity3.48E-03
50GO:0052793: pectin acetylesterase activity3.48E-03
51GO:0004506: squalene monooxygenase activity3.48E-03
52GO:0043495: protein anchor3.48E-03
53GO:0004040: amidase activity4.46E-03
54GO:0022891: substrate-specific transmembrane transporter activity4.47E-03
55GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.53E-03
56GO:1990714: hydroxyproline O-galactosyltransferase activity5.53E-03
57GO:0004130: cytochrome-c peroxidase activity5.53E-03
58GO:0016208: AMP binding5.53E-03
59GO:0016688: L-ascorbate peroxidase activity5.53E-03
60GO:0051287: NAD binding5.58E-03
61GO:0016491: oxidoreductase activity6.14E-03
62GO:0004124: cysteine synthase activity6.67E-03
63GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.67E-03
64GO:0004017: adenylate kinase activity6.67E-03
65GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.95E-03
66GO:0004620: phospholipase activity7.90E-03
67GO:0019899: enzyme binding7.90E-03
68GO:0043022: ribosome binding9.20E-03
69GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.06E-02
70GO:0005375: copper ion transmembrane transporter activity1.06E-02
71GO:0015250: water channel activity1.10E-02
72GO:0016168: chlorophyll binding1.17E-02
73GO:0008236: serine-type peptidase activity1.37E-02
74GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.45E-02
75GO:0004568: chitinase activity1.51E-02
76GO:0008047: enzyme activator activity1.51E-02
77GO:0015020: glucuronosyltransferase activity1.51E-02
78GO:0004222: metalloendopeptidase activity1.60E-02
79GO:0003993: acid phosphatase activity1.92E-02
80GO:0031072: heat shock protein binding2.02E-02
81GO:0009982: pseudouridine synthase activity2.02E-02
82GO:0015114: phosphate ion transmembrane transporter activity2.02E-02
83GO:0004565: beta-galactosidase activity2.02E-02
84GO:0010329: auxin efflux transmembrane transporter activity2.02E-02
85GO:0004022: alcohol dehydrogenase (NAD) activity2.02E-02
86GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.02E-02
87GO:0050661: NADP binding2.10E-02
88GO:0008146: sulfotransferase activity2.38E-02
89GO:0042802: identical protein binding2.73E-02
90GO:0003714: transcription corepressor activity2.77E-02
91GO:0043424: protein histidine kinase binding2.98E-02
92GO:0008324: cation transmembrane transporter activity2.98E-02
93GO:0004707: MAP kinase activity3.18E-02
94GO:0003690: double-stranded DNA binding3.31E-02
95GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.40E-02
96GO:0003777: microtubule motor activity3.54E-02
97GO:0030570: pectate lyase activity3.61E-02
98GO:0008289: lipid binding3.78E-02
99GO:0003727: single-stranded RNA binding3.83E-02
100GO:0008514: organic anion transmembrane transporter activity3.83E-02
101GO:0003756: protein disulfide isomerase activity3.83E-02
102GO:0047134: protein-disulfide reductase activity4.06E-02
103GO:0008080: N-acetyltransferase activity4.53E-02
104GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.53E-02
105GO:0016746: transferase activity, transferring acyl groups4.67E-02
106GO:0004791: thioredoxin-disulfide reductase activity4.76E-02
107GO:0050662: coenzyme binding4.76E-02
108GO:0010181: FMN binding4.76E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0000408: EKC/KEOPS complex0.00E+00
5GO:0009507: chloroplast6.06E-51
6GO:0009570: chloroplast stroma1.61E-38
7GO:0009941: chloroplast envelope1.31E-27
8GO:0009535: chloroplast thylakoid membrane7.46E-26
9GO:0009579: thylakoid2.48E-21
10GO:0009543: chloroplast thylakoid lumen2.84E-20
11GO:0009534: chloroplast thylakoid1.64E-16
12GO:0031977: thylakoid lumen8.36E-16
13GO:0005840: ribosome4.84E-14
14GO:0010007: magnesium chelatase complex1.27E-07
15GO:0031969: chloroplast membrane5.18E-06
16GO:0030095: chloroplast photosystem II9.94E-06
17GO:0000311: plastid large ribosomal subunit1.43E-04
18GO:0009654: photosystem II oxygen evolving complex3.71E-04
19GO:0009547: plastid ribosome5.06E-04
20GO:0043674: columella5.06E-04
21GO:0009515: granal stacked thylakoid5.06E-04
22GO:0009533: chloroplast stromal thylakoid5.24E-04
23GO:0009536: plastid6.76E-04
24GO:0009523: photosystem II9.55E-04
25GO:0019898: extrinsic component of membrane9.55E-04
26GO:0030093: chloroplast photosystem I1.09E-03
27GO:0032040: small-subunit processome1.73E-03
28GO:0009528: plastid inner membrane1.78E-03
29GO:0009509: chromoplast1.78E-03
30GO:0046658: anchored component of plasma membrane1.81E-03
31GO:0032432: actin filament bundle2.58E-03
32GO:0015934: large ribosomal subunit2.80E-03
33GO:0042651: thylakoid membrane3.40E-03
34GO:0009527: plastid outer membrane3.48E-03
35GO:0031225: anchored component of membrane5.08E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.53E-03
37GO:0016021: integral component of membrane7.51E-03
38GO:0042807: central vacuole7.90E-03
39GO:0016020: membrane8.65E-03
40GO:0010319: stromule9.82E-03
41GO:0009295: nucleoid9.82E-03
42GO:0009706: chloroplast inner membrane1.00E-02
43GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.20E-02
44GO:0008180: COP9 signalosome1.20E-02
45GO:0005886: plasma membrane1.33E-02
46GO:0009505: plant-type cell wall1.44E-02
47GO:0005884: actin filament1.67E-02
48GO:0009508: plastid chromosome2.02E-02
49GO:0000312: plastid small ribosomal subunit2.20E-02
50GO:0015935: small ribosomal subunit3.18E-02
51GO:0009532: plastid stroma3.18E-02
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Gene type



Gene DE type