Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G19530

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006223: uracil salvage0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0006573: valine metabolic process0.00E+00
7GO:0015976: carbon utilization3.14E-07
8GO:0006633: fatty acid biosynthetic process1.25E-06
9GO:0032544: plastid translation8.58E-06
10GO:0016117: carotenoid biosynthetic process9.15E-06
11GO:0042335: cuticle development1.08E-05
12GO:0051016: barbed-end actin filament capping2.67E-05
13GO:0009773: photosynthetic electron transport in photosystem I2.71E-05
14GO:0019464: glycine decarboxylation via glycine cleavage system4.83E-05
15GO:2000122: negative regulation of stomatal complex development4.83E-05
16GO:0006546: glycine catabolic process4.83E-05
17GO:0010037: response to carbon dioxide4.83E-05
18GO:0009658: chloroplast organization6.99E-05
19GO:0016123: xanthophyll biosynthetic process7.68E-05
20GO:0015979: photosynthesis1.61E-04
21GO:0009409: response to cold1.84E-04
22GO:0009416: response to light stimulus2.20E-04
23GO:0006810: transport2.34E-04
24GO:0006438: valyl-tRNA aminoacylation2.68E-04
25GO:0010442: guard cell morphogenesis2.68E-04
26GO:0071370: cellular response to gibberellin stimulus2.68E-04
27GO:0006723: cuticle hydrocarbon biosynthetic process2.68E-04
28GO:0000481: maturation of 5S rRNA2.68E-04
29GO:0042547: cell wall modification involved in multidimensional cell growth2.68E-04
30GO:0006551: leucine metabolic process2.68E-04
31GO:0042371: vitamin K biosynthetic process2.68E-04
32GO:1902458: positive regulation of stomatal opening2.68E-04
33GO:0034337: RNA folding2.68E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.68E-04
35GO:0000902: cell morphogenesis3.80E-04
36GO:0052541: plant-type cell wall cellulose metabolic process5.89E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process5.89E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process5.89E-04
39GO:0000038: very long-chain fatty acid metabolic process6.07E-04
40GO:0010411: xyloglucan metabolic process6.23E-04
41GO:0045037: protein import into chloroplast stroma6.94E-04
42GO:0030036: actin cytoskeleton organization7.86E-04
43GO:0010207: photosystem II assembly8.84E-04
44GO:0019253: reductive pentose-phosphate cycle8.84E-04
45GO:0009853: photorespiration9.53E-04
46GO:0006518: peptide metabolic process9.55E-04
47GO:0006000: fructose metabolic process9.55E-04
48GO:0043447: alkane biosynthetic process9.55E-04
49GO:0006696: ergosterol biosynthetic process9.55E-04
50GO:2001295: malonyl-CoA biosynthetic process9.55E-04
51GO:0090506: axillary shoot meristem initiation9.55E-04
52GO:0010025: wax biosynthetic process1.10E-03
53GO:0006833: water transport1.10E-03
54GO:0055114: oxidation-reduction process1.32E-03
55GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.36E-03
56GO:1902476: chloride transmembrane transport1.36E-03
57GO:0007231: osmosensory signaling pathway1.36E-03
58GO:0042546: cell wall biogenesis1.37E-03
59GO:0061077: chaperone-mediated protein folding1.46E-03
60GO:0009765: photosynthesis, light harvesting1.83E-03
61GO:0033500: carbohydrate homeostasis1.83E-03
62GO:0045727: positive regulation of translation1.83E-03
63GO:0044206: UMP salvage1.83E-03
64GO:0006542: glutamine biosynthetic process1.83E-03
65GO:0019676: ammonia assimilation cycle1.83E-03
66GO:0009826: unidimensional cell growth2.07E-03
67GO:0034220: ion transmembrane transport2.21E-03
68GO:0010236: plastoquinone biosynthetic process2.33E-03
69GO:0016120: carotene biosynthetic process2.33E-03
70GO:0045038: protein import into chloroplast thylakoid membrane2.33E-03
71GO:0043097: pyrimidine nucleoside salvage2.33E-03
72GO:0009793: embryo development ending in seed dormancy2.38E-03
73GO:0010190: cytochrome b6f complex assembly2.88E-03
74GO:0006206: pyrimidine nucleobase metabolic process2.88E-03
75GO:0032973: amino acid export2.88E-03
76GO:0042549: photosystem II stabilization2.88E-03
77GO:0016132: brassinosteroid biosynthetic process2.94E-03
78GO:0009735: response to cytokinin3.02E-03
79GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.20E-03
80GO:0009955: adaxial/abaxial pattern specification3.46E-03
81GO:0009612: response to mechanical stimulus3.46E-03
82GO:0009082: branched-chain amino acid biosynthetic process3.46E-03
83GO:0010067: procambium histogenesis3.46E-03
84GO:0006694: steroid biosynthetic process3.46E-03
85GO:0009099: valine biosynthetic process3.46E-03
86GO:1901259: chloroplast rRNA processing3.46E-03
87GO:0009854: oxidative photosynthetic carbon pathway3.46E-03
88GO:0010555: response to mannitol3.46E-03
89GO:0042742: defense response to bacterium3.72E-03
90GO:0043090: amino acid import4.08E-03
91GO:0006821: chloride transport4.08E-03
92GO:0051693: actin filament capping4.08E-03
93GO:0030497: fatty acid elongation4.08E-03
94GO:0009645: response to low light intensity stimulus4.08E-03
95GO:0006401: RNA catabolic process4.08E-03
96GO:0016126: sterol biosynthetic process4.25E-03
97GO:0010027: thylakoid membrane organization4.25E-03
98GO:0008610: lipid biosynthetic process4.73E-03
99GO:0009642: response to light intensity4.73E-03
100GO:0032508: DNA duplex unwinding4.73E-03
101GO:2000070: regulation of response to water deprivation4.73E-03
102GO:0045010: actin nucleation4.73E-03
103GO:0006002: fructose 6-phosphate metabolic process5.42E-03
104GO:0015996: chlorophyll catabolic process5.42E-03
105GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.42E-03
106GO:0007186: G-protein coupled receptor signaling pathway5.42E-03
107GO:0009097: isoleucine biosynthetic process5.42E-03
108GO:0009808: lignin metabolic process5.42E-03
109GO:0009932: cell tip growth5.42E-03
110GO:0009817: defense response to fungus, incompatible interaction5.54E-03
111GO:0010206: photosystem II repair6.14E-03
112GO:0080144: amino acid homeostasis6.14E-03
113GO:0010119: regulation of stomatal movement6.40E-03
114GO:0043069: negative regulation of programmed cell death7.68E-03
115GO:0048829: root cap development7.68E-03
116GO:0019684: photosynthesis, light reaction8.50E-03
117GO:0009089: lysine biosynthetic process via diaminopimelate8.50E-03
118GO:0006816: calcium ion transport8.50E-03
119GO:0043085: positive regulation of catalytic activity8.50E-03
120GO:1903507: negative regulation of nucleic acid-templated transcription8.50E-03
121GO:0000272: polysaccharide catabolic process8.50E-03
122GO:0006415: translational termination8.50E-03
123GO:0018119: peptidyl-cysteine S-nitrosylation8.50E-03
124GO:0046686: response to cadmium ion8.85E-03
125GO:0015706: nitrate transport9.35E-03
126GO:0006006: glucose metabolic process1.02E-02
127GO:0009725: response to hormone1.02E-02
128GO:0006094: gluconeogenesis1.02E-02
129GO:0009767: photosynthetic electron transport chain1.02E-02
130GO:0005986: sucrose biosynthetic process1.02E-02
131GO:0010143: cutin biosynthetic process1.11E-02
132GO:0010020: chloroplast fission1.11E-02
133GO:0007015: actin filament organization1.11E-02
134GO:0010223: secondary shoot formation1.11E-02
135GO:0010167: response to nitrate1.21E-02
136GO:0005985: sucrose metabolic process1.21E-02
137GO:0090351: seedling development1.21E-02
138GO:0070588: calcium ion transmembrane transport1.21E-02
139GO:0006364: rRNA processing1.22E-02
140GO:0051603: proteolysis involved in cellular protein catabolic process1.27E-02
141GO:0006636: unsaturated fatty acid biosynthetic process1.30E-02
142GO:0006071: glycerol metabolic process1.30E-02
143GO:0009116: nucleoside metabolic process1.40E-02
144GO:0019344: cysteine biosynthetic process1.40E-02
145GO:0006418: tRNA aminoacylation for protein translation1.50E-02
146GO:0010026: trichome differentiation1.50E-02
147GO:0009768: photosynthesis, light harvesting in photosystem I1.50E-02
148GO:0007017: microtubule-based process1.50E-02
149GO:0003333: amino acid transmembrane transport1.61E-02
150GO:0009814: defense response, incompatible interaction1.71E-02
151GO:2000022: regulation of jasmonic acid mediated signaling pathway1.71E-02
152GO:0006730: one-carbon metabolic process1.71E-02
153GO:0080092: regulation of pollen tube growth1.71E-02
154GO:0045454: cell redox homeostasis1.72E-02
155GO:0001944: vasculature development1.82E-02
156GO:0006284: base-excision repair1.94E-02
157GO:0019722: calcium-mediated signaling1.94E-02
158GO:0010089: xylem development1.94E-02
159GO:0042631: cellular response to water deprivation2.17E-02
160GO:0080022: primary root development2.17E-02
161GO:0000413: protein peptidyl-prolyl isomerization2.17E-02
162GO:0010087: phloem or xylem histogenesis2.17E-02
163GO:0008360: regulation of cell shape2.29E-02
164GO:0006662: glycerol ether metabolic process2.29E-02
165GO:0010182: sugar mediated signaling pathway2.29E-02
166GO:0019252: starch biosynthetic process2.53E-02
167GO:0002229: defense response to oomycetes2.65E-02
168GO:0007264: small GTPase mediated signal transduction2.78E-02
169GO:0048235: pollen sperm cell differentiation2.78E-02
170GO:0032502: developmental process2.78E-02
171GO:1901657: glycosyl compound metabolic process2.91E-02
172GO:0045490: pectin catabolic process3.02E-02
173GO:0007267: cell-cell signaling3.18E-02
174GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.59E-02
175GO:0071555: cell wall organization3.73E-02
176GO:0009627: systemic acquired resistance3.73E-02
177GO:0042128: nitrate assimilation3.73E-02
178GO:0009651: response to salt stress3.78E-02
179GO:0030244: cellulose biosynthetic process4.17E-02
180GO:0018298: protein-chromophore linkage4.17E-02
181GO:0000160: phosphorelay signal transduction system4.32E-02
182GO:0009834: plant-type secondary cell wall biogenesis4.47E-02
183GO:0009407: toxin catabolic process4.47E-02
184GO:0010218: response to far red light4.47E-02
185GO:0007568: aging4.62E-02
186GO:0042254: ribosome biogenesis4.74E-02
187GO:0006865: amino acid transport4.77E-02
188GO:0009867: jasmonic acid mediated signaling pathway4.93E-02
189GO:0016051: carbohydrate biosynthetic process4.93E-02
190GO:0009637: response to blue light4.93E-02
RankGO TermAdjusted P value
1GO:0008859: exoribonuclease II activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
10GO:0050614: delta24-sterol reductase activity0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0019843: rRNA binding9.05E-06
13GO:0004148: dihydrolipoyl dehydrogenase activity1.18E-05
14GO:0004375: glycine dehydrogenase (decarboxylating) activity2.67E-05
15GO:0004089: carbonate dehydratase activity4.22E-05
16GO:0102336: 3-oxo-arachidoyl-CoA synthase activity7.29E-05
17GO:0102337: 3-oxo-cerotoyl-CoA synthase activity7.29E-05
18GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity7.29E-05
19GO:0009922: fatty acid elongase activity7.68E-05
20GO:0080132: fatty acid alpha-hydroxylase activity2.68E-04
21GO:0003984: acetolactate synthase activity2.68E-04
22GO:0009671: nitrate:proton symporter activity2.68E-04
23GO:0004832: valine-tRNA ligase activity2.68E-04
24GO:0051996: squalene synthase activity2.68E-04
25GO:0000248: C-5 sterol desaturase activity2.68E-04
26GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-04
27GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.89E-04
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.89E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.89E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.89E-04
31GO:0010291: carotene beta-ring hydroxylase activity5.89E-04
32GO:0042389: omega-3 fatty acid desaturase activity5.89E-04
33GO:0010297: heteropolysaccharide binding5.89E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.89E-04
35GO:0004047: aminomethyltransferase activity5.89E-04
36GO:0016798: hydrolase activity, acting on glycosyl bonds6.23E-04
37GO:0050734: hydroxycinnamoyltransferase activity9.55E-04
38GO:0004075: biotin carboxylase activity9.55E-04
39GO:0030267: glyoxylate reductase (NADP) activity9.55E-04
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.55E-04
41GO:0005528: FK506 binding1.21E-03
42GO:0016149: translation release factor activity, codon specific1.36E-03
43GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.36E-03
44GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.59E-03
45GO:0030570: pectate lyase activity1.74E-03
46GO:0010328: auxin influx transmembrane transporter activity1.83E-03
47GO:0005253: anion channel activity1.83E-03
48GO:0004845: uracil phosphoribosyltransferase activity1.83E-03
49GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.83E-03
50GO:0016773: phosphotransferase activity, alcohol group as acceptor2.33E-03
51GO:0004356: glutamate-ammonia ligase activity2.33E-03
52GO:0003989: acetyl-CoA carboxylase activity2.33E-03
53GO:0008725: DNA-3-methyladenine glycosylase activity2.33E-03
54GO:0042578: phosphoric ester hydrolase activity2.88E-03
55GO:0005247: voltage-gated chloride channel activity2.88E-03
56GO:0051015: actin filament binding3.35E-03
57GO:0004849: uridine kinase activity3.46E-03
58GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.46E-03
59GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.46E-03
60GO:0051920: peroxiredoxin activity3.46E-03
61GO:0016722: oxidoreductase activity, oxidizing metal ions3.78E-03
62GO:0015250: water channel activity4.25E-03
63GO:0003824: catalytic activity4.46E-03
64GO:0004564: beta-fructofuranosidase activity4.73E-03
65GO:0016209: antioxidant activity4.73E-03
66GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.42E-03
67GO:0003843: 1,3-beta-D-glucan synthase activity5.42E-03
68GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.75E-03
69GO:0008889: glycerophosphodiester phosphodiesterase activity6.14E-03
70GO:0003747: translation release factor activity6.14E-03
71GO:0004575: sucrose alpha-glucosidase activity6.90E-03
72GO:0015112: nitrate transmembrane transporter activity6.90E-03
73GO:0008047: enzyme activator activity7.68E-03
74GO:0042802: identical protein binding8.11E-03
75GO:0005089: Rho guanyl-nucleotide exchange factor activity8.50E-03
76GO:0015386: potassium:proton antiporter activity8.50E-03
77GO:0004185: serine-type carboxypeptidase activity9.06E-03
78GO:0051537: 2 iron, 2 sulfur cluster binding9.81E-03
79GO:0000175: 3'-5'-exoribonuclease activity1.02E-02
80GO:0005198: structural molecule activity1.02E-02
81GO:0005262: calcium channel activity1.02E-02
82GO:0031409: pigment binding1.30E-02
83GO:0015171: amino acid transmembrane transporter activity1.36E-02
84GO:0003714: transcription corepressor activity1.40E-02
85GO:0003735: structural constituent of ribosome1.42E-02
86GO:0015079: potassium ion transmembrane transporter activity1.50E-02
87GO:0004540: ribonuclease activity1.61E-02
88GO:0033612: receptor serine/threonine kinase binding1.61E-02
89GO:0019706: protein-cysteine S-palmitoyltransferase activity1.61E-02
90GO:0008514: organic anion transmembrane transporter activity1.94E-02
91GO:0005102: receptor binding2.05E-02
92GO:0047134: protein-disulfide reductase activity2.05E-02
93GO:0004812: aminoacyl-tRNA ligase activity2.05E-02
94GO:0003924: GTPase activity2.24E-02
95GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.25E-02
96GO:0050662: coenzyme binding2.41E-02
97GO:0004791: thioredoxin-disulfide reductase activity2.41E-02
98GO:0004872: receptor activity2.53E-02
99GO:0048038: quinone binding2.65E-02
100GO:0005525: GTP binding2.76E-02
101GO:0000156: phosphorelay response regulator activity2.91E-02
102GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.91E-02
103GO:0008483: transaminase activity3.18E-02
104GO:0005200: structural constituent of cytoskeleton3.18E-02
105GO:0016597: amino acid binding3.31E-02
106GO:0005509: calcium ion binding3.32E-02
107GO:0005515: protein binding3.58E-02
108GO:0016168: chlorophyll binding3.59E-02
109GO:0005506: iron ion binding3.65E-02
110GO:0102483: scopolin beta-glucosidase activity3.88E-02
111GO:0008236: serine-type peptidase activity4.02E-02
112GO:0004222: metalloendopeptidase activity4.47E-02
113GO:0050897: cobalt ion binding4.62E-02
114GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.62E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0009507: chloroplast2.71E-27
3GO:0009941: chloroplast envelope7.23E-20
4GO:0009535: chloroplast thylakoid membrane2.64E-18
5GO:0009570: chloroplast stroma5.83E-17
6GO:0009579: thylakoid5.24E-12
7GO:0048046: apoplast5.73E-12
8GO:0009543: chloroplast thylakoid lumen1.21E-09
9GO:0031977: thylakoid lumen1.74E-08
10GO:0009534: chloroplast thylakoid1.39E-07
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.55E-07
12GO:0009654: photosystem II oxygen evolving complex3.46E-06
13GO:0031225: anchored component of membrane4.18E-06
14GO:0019898: extrinsic component of membrane1.72E-05
15GO:0005960: glycine cleavage complex2.67E-05
16GO:0009505: plant-type cell wall3.04E-05
17GO:0010319: stromule3.32E-05
18GO:0046658: anchored component of plasma membrane4.71E-05
19GO:0030095: chloroplast photosystem II5.12E-05
20GO:0016020: membrane2.00E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.68E-04
22GO:0005618: cell wall4.32E-04
23GO:0042170: plastid membrane5.89E-04
24GO:0008290: F-actin capping protein complex5.89E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex5.89E-04
26GO:0010287: plastoglobule6.41E-04
27GO:0031969: chloroplast membrane6.54E-04
28GO:0009528: plastid inner membrane9.55E-04
29GO:0005775: vacuolar lumen1.36E-03
30GO:0009532: plastid stroma1.46E-03
31GO:0009527: plastid outer membrane1.83E-03
32GO:0000178: exosome (RNase complex)2.33E-03
33GO:0034707: chloride channel complex2.88E-03
34GO:0005840: ribosome4.08E-03
35GO:0000148: 1,3-beta-D-glucan synthase complex5.42E-03
36GO:0045298: tubulin complex6.14E-03
37GO:0005763: mitochondrial small ribosomal subunit6.14E-03
38GO:0005886: plasma membrane7.38E-03
39GO:0016324: apical plasma membrane7.68E-03
40GO:0005884: actin filament8.50E-03
41GO:0005789: endoplasmic reticulum membrane8.52E-03
42GO:0000311: plastid large ribosomal subunit9.35E-03
43GO:0032040: small-subunit processome9.35E-03
44GO:0030659: cytoplasmic vesicle membrane1.11E-02
45GO:0030176: integral component of endoplasmic reticulum membrane1.21E-02
46GO:0030076: light-harvesting complex1.21E-02
47GO:0022626: cytosolic ribosome1.23E-02
48GO:0009506: plasmodesma1.43E-02
49GO:0042651: thylakoid membrane1.50E-02
50GO:0009706: chloroplast inner membrane1.75E-02
51GO:0009522: photosystem I2.41E-02
52GO:0009523: photosystem II2.53E-02
53GO:0016021: integral component of membrane2.64E-02
54GO:0005759: mitochondrial matrix2.75E-02
55GO:0005887: integral component of plasma membrane3.29E-02
56GO:0005615: extracellular space3.38E-02
57GO:0000932: P-body3.45E-02
58GO:0005773: vacuole3.86E-02
59GO:0005576: extracellular region4.11E-02
60GO:0009707: chloroplast outer membrane4.17E-02
61GO:0000325: plant-type vacuole4.62E-02
62GO:0015934: large ribosomal subunit4.62E-02
63GO:0009536: plastid4.99E-02
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Gene type



Gene DE type