GO Enrichment Analysis of Co-expressed Genes with
AT4G18480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0006412: translation | 1.61E-21 |
| 8 | GO:0042254: ribosome biogenesis | 6.34E-13 |
| 9 | GO:0032544: plastid translation | 1.12E-12 |
| 10 | GO:0009735: response to cytokinin | 5.20E-09 |
| 11 | GO:0090391: granum assembly | 1.15E-08 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 3.08E-08 |
| 13 | GO:0015979: photosynthesis | 3.56E-08 |
| 14 | GO:0010206: photosystem II repair | 6.54E-06 |
| 15 | GO:0010027: thylakoid membrane organization | 2.08E-05 |
| 16 | GO:0010207: photosystem II assembly | 2.94E-05 |
| 17 | GO:0010236: plastoquinone biosynthetic process | 5.09E-05 |
| 18 | GO:0017148: negative regulation of translation | 1.04E-04 |
| 19 | GO:0009772: photosynthetic electron transport in photosystem II | 1.37E-04 |
| 20 | GO:0010196: nonphotochemical quenching | 1.37E-04 |
| 21 | GO:0034337: RNA folding | 2.09E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.09E-04 |
| 23 | GO:0009090: homoserine biosynthetic process | 2.09E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.09E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 2.09E-04 |
| 26 | GO:0042759: long-chain fatty acid biosynthetic process | 2.09E-04 |
| 27 | GO:0042371: vitamin K biosynthetic process | 2.09E-04 |
| 28 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.16E-04 |
| 29 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.71E-04 |
| 30 | GO:0009773: photosynthetic electron transport in photosystem I | 4.29E-04 |
| 31 | GO:0006729: tetrahydrobiopterin biosynthetic process | 4.66E-04 |
| 32 | GO:0006568: tryptophan metabolic process | 4.66E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.66E-04 |
| 34 | GO:0071484: cellular response to light intensity | 1.08E-03 |
| 35 | GO:0009102: biotin biosynthetic process | 1.08E-03 |
| 36 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.08E-03 |
| 37 | GO:0051639: actin filament network formation | 1.08E-03 |
| 38 | GO:0006241: CTP biosynthetic process | 1.08E-03 |
| 39 | GO:0006165: nucleoside diphosphate phosphorylation | 1.08E-03 |
| 40 | GO:0006228: UTP biosynthetic process | 1.08E-03 |
| 41 | GO:1901332: negative regulation of lateral root development | 1.08E-03 |
| 42 | GO:0006986: response to unfolded protein | 1.08E-03 |
| 43 | GO:0055070: copper ion homeostasis | 1.08E-03 |
| 44 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.08E-03 |
| 45 | GO:0009067: aspartate family amino acid biosynthetic process | 1.08E-03 |
| 46 | GO:0009411: response to UV | 1.23E-03 |
| 47 | GO:0009658: chloroplast organization | 1.27E-03 |
| 48 | GO:0009306: protein secretion | 1.34E-03 |
| 49 | GO:0051764: actin crosslink formation | 1.44E-03 |
| 50 | GO:0006183: GTP biosynthetic process | 1.44E-03 |
| 51 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.44E-03 |
| 52 | GO:0000413: protein peptidyl-prolyl isomerization | 1.56E-03 |
| 53 | GO:0042549: photosystem II stabilization | 2.26E-03 |
| 54 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.26E-03 |
| 55 | GO:1901259: chloroplast rRNA processing | 2.71E-03 |
| 56 | GO:0042372: phylloquinone biosynthetic process | 2.71E-03 |
| 57 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.71E-03 |
| 58 | GO:0010189: vitamin E biosynthetic process | 2.71E-03 |
| 59 | GO:0009854: oxidative photosynthetic carbon pathway | 2.71E-03 |
| 60 | GO:0009088: threonine biosynthetic process | 2.71E-03 |
| 61 | GO:0010019: chloroplast-nucleus signaling pathway | 2.71E-03 |
| 62 | GO:0006457: protein folding | 2.96E-03 |
| 63 | GO:0009790: embryo development | 3.07E-03 |
| 64 | GO:0009627: systemic acquired resistance | 3.32E-03 |
| 65 | GO:0006633: fatty acid biosynthetic process | 3.37E-03 |
| 66 | GO:0048564: photosystem I assembly | 3.71E-03 |
| 67 | GO:0008610: lipid biosynthetic process | 3.71E-03 |
| 68 | GO:0006605: protein targeting | 3.71E-03 |
| 69 | GO:0006526: arginine biosynthetic process | 4.24E-03 |
| 70 | GO:0009245: lipid A biosynthetic process | 4.80E-03 |
| 71 | GO:0048589: developmental growth | 4.80E-03 |
| 72 | GO:0034599: cellular response to oxidative stress | 5.13E-03 |
| 73 | GO:0009086: methionine biosynthetic process | 5.38E-03 |
| 74 | GO:0030001: metal ion transport | 5.60E-03 |
| 75 | GO:0006949: syncytium formation | 5.99E-03 |
| 76 | GO:0006535: cysteine biosynthetic process from serine | 5.99E-03 |
| 77 | GO:0045036: protein targeting to chloroplast | 5.99E-03 |
| 78 | GO:0042742: defense response to bacterium | 6.48E-03 |
| 79 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.62E-03 |
| 80 | GO:0043085: positive regulation of catalytic activity | 6.62E-03 |
| 81 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.62E-03 |
| 82 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.28E-03 |
| 83 | GO:0010152: pollen maturation | 7.28E-03 |
| 84 | GO:0006006: glucose metabolic process | 7.96E-03 |
| 85 | GO:0010143: cutin biosynthetic process | 8.66E-03 |
| 86 | GO:0019253: reductive pentose-phosphate cycle | 8.66E-03 |
| 87 | GO:0046688: response to copper ion | 9.37E-03 |
| 88 | GO:0010025: wax biosynthetic process | 1.01E-02 |
| 89 | GO:0019344: cysteine biosynthetic process | 1.09E-02 |
| 90 | GO:0045454: cell redox homeostasis | 1.09E-02 |
| 91 | GO:0000027: ribosomal large subunit assembly | 1.09E-02 |
| 92 | GO:0051017: actin filament bundle assembly | 1.09E-02 |
| 93 | GO:0016114: terpenoid biosynthetic process | 1.25E-02 |
| 94 | GO:0032259: methylation | 1.35E-02 |
| 95 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.41E-02 |
| 96 | GO:0048443: stamen development | 1.50E-02 |
| 97 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.59E-02 |
| 98 | GO:0042335: cuticle development | 1.68E-02 |
| 99 | GO:0006520: cellular amino acid metabolic process | 1.77E-02 |
| 100 | GO:0006662: glycerol ether metabolic process | 1.77E-02 |
| 101 | GO:0015986: ATP synthesis coupled proton transport | 1.86E-02 |
| 102 | GO:0000302: response to reactive oxygen species | 2.06E-02 |
| 103 | GO:0045490: pectin catabolic process | 2.11E-02 |
| 104 | GO:0030163: protein catabolic process | 2.25E-02 |
| 105 | GO:0009567: double fertilization forming a zygote and endosperm | 2.36E-02 |
| 106 | GO:0009739: response to gibberellin | 2.36E-02 |
| 107 | GO:0009828: plant-type cell wall loosening | 2.36E-02 |
| 108 | GO:0016126: sterol biosynthetic process | 2.67E-02 |
| 109 | GO:0009793: embryo development ending in seed dormancy | 2.73E-02 |
| 110 | GO:0016310: phosphorylation | 3.01E-02 |
| 111 | GO:0009817: defense response to fungus, incompatible interaction | 3.23E-02 |
| 112 | GO:0018298: protein-chromophore linkage | 3.23E-02 |
| 113 | GO:0010311: lateral root formation | 3.34E-02 |
| 114 | GO:0007568: aging | 3.58E-02 |
| 115 | GO:0009631: cold acclimation | 3.58E-02 |
| 116 | GO:0009853: photorespiration | 3.82E-02 |
| 117 | GO:0080167: response to karrikin | 4.04E-02 |
| 118 | GO:0042542: response to hydrogen peroxide | 4.45E-02 |
| 119 | GO:0010114: response to red light | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 7 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 8 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 9 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 10 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 11 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 12 | GO:0019843: rRNA binding | 1.42E-23 |
| 13 | GO:0003735: structural constituent of ribosome | 2.50E-23 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.15E-08 |
| 15 | GO:0005528: FK506 binding | 1.26E-06 |
| 16 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 7.54E-06 |
| 17 | GO:0016851: magnesium chelatase activity | 1.73E-05 |
| 18 | GO:0043023: ribosomal large subunit binding | 1.73E-05 |
| 19 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.09E-04 |
| 20 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.09E-04 |
| 21 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 2.09E-04 |
| 22 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.09E-04 |
| 23 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.09E-04 |
| 24 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.09E-04 |
| 25 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 2.09E-04 |
| 26 | GO:0004163: diphosphomevalonate decarboxylase activity | 2.09E-04 |
| 27 | GO:0004412: homoserine dehydrogenase activity | 4.66E-04 |
| 28 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.66E-04 |
| 29 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.66E-04 |
| 30 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 7.59E-04 |
| 31 | GO:0005507: copper ion binding | 9.10E-04 |
| 32 | GO:0051087: chaperone binding | 9.49E-04 |
| 33 | GO:0008097: 5S rRNA binding | 1.08E-03 |
| 34 | GO:0004072: aspartate kinase activity | 1.08E-03 |
| 35 | GO:0004550: nucleoside diphosphate kinase activity | 1.08E-03 |
| 36 | GO:0010011: auxin binding | 1.44E-03 |
| 37 | GO:0016836: hydro-lyase activity | 1.44E-03 |
| 38 | GO:0043495: protein anchor | 1.44E-03 |
| 39 | GO:0004659: prenyltransferase activity | 1.44E-03 |
| 40 | GO:0004040: amidase activity | 1.83E-03 |
| 41 | GO:0004130: cytochrome-c peroxidase activity | 2.26E-03 |
| 42 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.26E-03 |
| 43 | GO:0031177: phosphopantetheine binding | 2.26E-03 |
| 44 | GO:0016688: L-ascorbate peroxidase activity | 2.26E-03 |
| 45 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.26E-03 |
| 46 | GO:0004124: cysteine synthase activity | 2.71E-03 |
| 47 | GO:0051920: peroxiredoxin activity | 2.71E-03 |
| 48 | GO:0015631: tubulin binding | 2.71E-03 |
| 49 | GO:0004017: adenylate kinase activity | 2.71E-03 |
| 50 | GO:0000035: acyl binding | 2.71E-03 |
| 51 | GO:0016168: chlorophyll binding | 3.15E-03 |
| 52 | GO:0019899: enzyme binding | 3.20E-03 |
| 53 | GO:0008236: serine-type peptidase activity | 3.69E-03 |
| 54 | GO:0016209: antioxidant activity | 3.71E-03 |
| 55 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.71E-03 |
| 56 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.88E-03 |
| 57 | GO:0042802: identical protein binding | 5.14E-03 |
| 58 | GO:0050661: NADP binding | 5.60E-03 |
| 59 | GO:0008047: enzyme activator activity | 5.99E-03 |
| 60 | GO:0051287: NAD binding | 7.66E-03 |
| 61 | GO:0031072: heat shock protein binding | 7.96E-03 |
| 62 | GO:0008266: poly(U) RNA binding | 8.66E-03 |
| 63 | GO:0042803: protein homodimerization activity | 1.16E-02 |
| 64 | GO:0051082: unfolded protein binding | 1.22E-02 |
| 65 | GO:0004707: MAP kinase activity | 1.25E-02 |
| 66 | GO:0004176: ATP-dependent peptidase activity | 1.25E-02 |
| 67 | GO:0022891: substrate-specific transmembrane transporter activity | 1.41E-02 |
| 68 | GO:0030570: pectate lyase activity | 1.41E-02 |
| 69 | GO:0003756: protein disulfide isomerase activity | 1.50E-02 |
| 70 | GO:0047134: protein-disulfide reductase activity | 1.59E-02 |
| 71 | GO:0004252: serine-type endopeptidase activity | 1.70E-02 |
| 72 | GO:0030170: pyridoxal phosphate binding | 1.70E-02 |
| 73 | GO:0008080: N-acetyltransferase activity | 1.77E-02 |
| 74 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.77E-02 |
| 75 | GO:0004791: thioredoxin-disulfide reductase activity | 1.86E-02 |
| 76 | GO:0005509: calcium ion binding | 1.95E-02 |
| 77 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.25E-02 |
| 78 | GO:0051015: actin filament binding | 2.25E-02 |
| 79 | GO:0016791: phosphatase activity | 2.36E-02 |
| 80 | GO:0008483: transaminase activity | 2.46E-02 |
| 81 | GO:0008237: metallopeptidase activity | 2.46E-02 |
| 82 | GO:0016597: amino acid binding | 2.57E-02 |
| 83 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.11E-02 |
| 84 | GO:0008168: methyltransferase activity | 3.15E-02 |
| 85 | GO:0003746: translation elongation factor activity | 3.82E-02 |
| 86 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.19E-02 |
| 87 | GO:0004185: serine-type carboxypeptidase activity | 4.57E-02 |
| 88 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 4 | GO:0009570: chloroplast stroma | 2.33E-71 |
| 5 | GO:0009507: chloroplast | 3.21E-61 |
| 6 | GO:0009941: chloroplast envelope | 8.57E-49 |
| 7 | GO:0009579: thylakoid | 2.99E-38 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 6.50E-28 |
| 9 | GO:0009534: chloroplast thylakoid | 4.98E-27 |
| 10 | GO:0005840: ribosome | 4.58E-24 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 8.78E-22 |
| 12 | GO:0031977: thylakoid lumen | 1.17E-17 |
| 13 | GO:0030095: chloroplast photosystem II | 5.78E-07 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.59E-06 |
| 15 | GO:0010007: magnesium chelatase complex | 7.54E-06 |
| 16 | GO:0019898: extrinsic component of membrane | 8.25E-06 |
| 17 | GO:0000311: plastid large ribosomal subunit | 1.92E-05 |
| 18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.09E-04 |
| 19 | GO:0009547: plastid ribosome | 2.09E-04 |
| 20 | GO:0016020: membrane | 2.99E-04 |
| 21 | GO:0030093: chloroplast photosystem I | 4.66E-04 |
| 22 | GO:0000312: plastid small ribosomal subunit | 6.29E-04 |
| 23 | GO:0009509: chromoplast | 7.59E-04 |
| 24 | GO:0033281: TAT protein transport complex | 7.59E-04 |
| 25 | GO:0009536: plastid | 7.83E-04 |
| 26 | GO:0015935: small ribosomal subunit | 1.04E-03 |
| 27 | GO:0032432: actin filament bundle | 1.08E-03 |
| 28 | GO:0055035: plastid thylakoid membrane | 1.83E-03 |
| 29 | GO:0009523: photosystem II | 1.94E-03 |
| 30 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.26E-03 |
| 31 | GO:0010319: stromule | 2.66E-03 |
| 32 | GO:0009295: nucleoid | 2.66E-03 |
| 33 | GO:0009533: chloroplast stromal thylakoid | 3.20E-03 |
| 34 | GO:0015934: large ribosomal subunit | 4.48E-03 |
| 35 | GO:0005884: actin filament | 6.62E-03 |
| 36 | GO:0032040: small-subunit processome | 7.28E-03 |
| 37 | GO:0009508: plastid chromosome | 7.96E-03 |
| 38 | GO:0022625: cytosolic large ribosomal subunit | 9.27E-03 |
| 39 | GO:0042651: thylakoid membrane | 1.17E-02 |
| 40 | GO:0009706: chloroplast inner membrane | 1.22E-02 |
| 41 | GO:0009522: photosystem I | 1.86E-02 |
| 42 | GO:0005759: mitochondrial matrix | 1.92E-02 |
| 43 | GO:0048046: apoplast | 2.25E-02 |
| 44 | GO:0005618: cell wall | 2.64E-02 |
| 45 | GO:0022626: cytosolic ribosome | 2.78E-02 |
| 46 | GO:0022627: cytosolic small ribosomal subunit | 2.80E-02 |
| 47 | GO:0009707: chloroplast outer membrane | 3.23E-02 |
| 48 | GO:0031969: chloroplast membrane | 4.04E-02 |