Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032928: regulation of superoxide anion generation0.00E+00
2GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:1902171: regulation of tocopherol cyclase activity0.00E+00
5GO:0009768: photosynthesis, light harvesting in photosystem I4.49E-19
6GO:0018298: protein-chromophore linkage7.08E-14
7GO:0009645: response to low light intensity stimulus3.90E-11
8GO:0015979: photosynthesis8.00E-10
9GO:0009644: response to high light intensity7.16E-09
10GO:0010114: response to red light4.53E-07
11GO:0007623: circadian rhythm6.34E-06
12GO:0009769: photosynthesis, light harvesting in photosystem II6.71E-06
13GO:0009416: response to light stimulus1.05E-05
14GO:0010218: response to far red light1.23E-05
15GO:0009637: response to blue light1.55E-05
16GO:0009688: abscisic acid biosynthetic process2.24E-05
17GO:0010362: negative regulation of anion channel activity by blue light3.12E-05
18GO:0016122: xanthophyll metabolic process7.88E-05
19GO:0010155: regulation of proton transport7.88E-05
20GO:0010017: red or far-red light signaling pathway8.76E-05
21GO:0031145: anaphase-promoting complex-dependent catabolic process1.37E-04
22GO:1902448: positive regulation of shade avoidance1.37E-04
23GO:0030071: regulation of mitotic metaphase/anaphase transition2.04E-04
24GO:0015846: polyamine transport2.76E-04
25GO:0030104: water homeostasis2.76E-04
26GO:0009765: photosynthesis, light harvesting2.76E-04
27GO:0010600: regulation of auxin biosynthetic process2.76E-04
28GO:0000160: phosphorelay signal transduction system3.49E-04
29GO:0080167: response to karrikin3.52E-04
30GO:0010117: photoprotection3.53E-04
31GO:0009904: chloroplast accumulation movement3.53E-04
32GO:0016123: xanthophyll biosynthetic process3.53E-04
33GO:0032876: negative regulation of DNA endoreduplication3.53E-04
34GO:0010119: regulation of stomatal movement3.84E-04
35GO:0009635: response to herbicide4.34E-04
36GO:0045926: negative regulation of growth5.20E-04
37GO:0009903: chloroplast avoidance movement5.20E-04
38GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.20E-04
39GO:0051510: regulation of unidimensional cell growth6.07E-04
40GO:0010161: red light signaling pathway6.07E-04
41GO:0009704: de-etiolation6.99E-04
42GO:0032875: regulation of DNA endoreduplication6.99E-04
43GO:0050821: protein stabilization6.99E-04
44GO:0010928: regulation of auxin mediated signaling pathway6.99E-04
45GO:0009819: drought recovery6.99E-04
46GO:0009642: response to light intensity6.99E-04
47GO:0009409: response to cold7.26E-04
48GO:0090333: regulation of stomatal closure8.92E-04
49GO:0009638: phototropism9.92E-04
50GO:0006535: cysteine biosynthetic process from serine1.10E-03
51GO:0043085: positive regulation of catalytic activity1.20E-03
52GO:0018107: peptidyl-threonine phosphorylation1.43E-03
53GO:0009767: photosynthetic electron transport chain1.43E-03
54GO:0009785: blue light signaling pathway1.43E-03
55GO:0009266: response to temperature stimulus1.55E-03
56GO:0090351: seedling development1.67E-03
57GO:0019344: cysteine biosynthetic process1.92E-03
58GO:0003333: amino acid transmembrane transport2.19E-03
59GO:0009269: response to desiccation2.19E-03
60GO:0071215: cellular response to abscisic acid stimulus2.46E-03
61GO:0009651: response to salt stress2.84E-03
62GO:0010087: phloem or xylem histogenesis2.90E-03
63GO:0000226: microtubule cytoskeleton organization2.90E-03
64GO:0009723: response to ethylene2.99E-03
65GO:0006662: glycerol ether metabolic process3.05E-03
66GO:0010182: sugar mediated signaling pathway3.05E-03
67GO:0009741: response to brassinosteroid3.05E-03
68GO:0006814: sodium ion transport3.20E-03
69GO:0009791: post-embryonic development3.36E-03
70GO:0045454: cell redox homeostasis3.82E-03
71GO:0048573: photoperiodism, flowering5.05E-03
72GO:0015995: chlorophyll biosynthetic process5.05E-03
73GO:0006865: amino acid transport6.18E-03
74GO:0034599: cellular response to oxidative stress6.58E-03
75GO:0009737: response to abscisic acid7.39E-03
76GO:0008283: cell proliferation7.60E-03
77GO:0009640: photomorphogenesis7.60E-03
78GO:0009735: response to cytokinin7.61E-03
79GO:0035556: intracellular signal transduction8.79E-03
80GO:0006812: cation transport8.91E-03
81GO:0009585: red, far-red light phototransduction9.36E-03
82GO:0009909: regulation of flower development1.01E-02
83GO:0006468: protein phosphorylation1.01E-02
84GO:0009624: response to nematode1.20E-02
85GO:0018105: peptidyl-serine phosphorylation1.22E-02
86GO:0009742: brassinosteroid mediated signaling pathway1.25E-02
87GO:0010228: vegetative to reproductive phase transition of meristem1.82E-02
88GO:0006470: protein dephosphorylation1.94E-02
89GO:0009826: unidimensional cell growth2.34E-02
90GO:0006970: response to osmotic stress2.54E-02
91GO:0055114: oxidation-reduction process2.73E-02
92GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.88E-02
93GO:0046777: protein autophosphorylation2.95E-02
94GO:0044550: secondary metabolite biosynthetic process2.98E-02
95GO:0045892: negative regulation of transcription, DNA-templated3.23E-02
96GO:0032259: methylation3.59E-02
97GO:0006629: lipid metabolic process3.71E-02
98GO:0009408: response to heat3.71E-02
RankGO TermAdjusted P value
1GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
2GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0031409: pigment binding8.51E-17
5GO:0016168: chlorophyll binding3.10E-14
6GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.12E-05
7GO:0050017: L-3-cyanoalanine synthase activity7.88E-05
8GO:0004672: protein kinase activity1.23E-04
9GO:0010277: chlorophyllide a oxygenase [overall] activity1.37E-04
10GO:0009882: blue light photoreceptor activity2.04E-04
11GO:0015203: polyamine transmembrane transporter activity2.04E-04
12GO:0004602: glutathione peroxidase activity5.20E-04
13GO:0004124: cysteine synthase activity5.20E-04
14GO:0051537: 2 iron, 2 sulfur cluster binding5.80E-04
15GO:0015293: symporter activity6.02E-04
16GO:0071949: FAD binding8.92E-04
17GO:0015174: basic amino acid transmembrane transporter activity9.92E-04
18GO:0015035: protein disulfide oxidoreductase activity1.03E-03
19GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.10E-03
20GO:0008047: enzyme activator activity1.10E-03
21GO:0004674: protein serine/threonine kinase activity1.15E-03
22GO:0047372: acylglycerol lipase activity1.20E-03
23GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.27E-03
24GO:0046872: metal ion binding1.35E-03
25GO:0005315: inorganic phosphate transmembrane transporter activity1.43E-03
26GO:0000155: phosphorelay sensor kinase activity1.43E-03
27GO:0015297: antiporter activity1.61E-03
28GO:0003712: transcription cofactor activity1.67E-03
29GO:0004190: aspartic-type endopeptidase activity1.67E-03
30GO:0008514: organic anion transmembrane transporter activity2.61E-03
31GO:0047134: protein-disulfide reductase activity2.75E-03
32GO:0004791: thioredoxin-disulfide reductase activity3.20E-03
33GO:0010181: FMN binding3.20E-03
34GO:0000156: phosphorelay response regulator activity3.84E-03
35GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-03
36GO:0005515: protein binding7.31E-03
37GO:0005198: structural molecule activity8.24E-03
38GO:0016301: kinase activity9.79E-03
39GO:0015171: amino acid transmembrane transporter activity1.01E-02
40GO:0016874: ligase activity1.15E-02
41GO:0030170: pyridoxal phosphate binding1.51E-02
42GO:0015144: carbohydrate transmembrane transporter activity1.60E-02
43GO:0005506: iron ion binding1.66E-02
44GO:0005351: sugar:proton symporter activity1.74E-02
45GO:0042802: identical protein binding2.09E-02
46GO:0008168: methyltransferase activity2.34E-02
47GO:0005524: ATP binding2.47E-02
48GO:0008233: peptidase activity2.77E-02
49GO:0004497: monooxygenase activity2.81E-02
50GO:0004722: protein serine/threonine phosphatase activity3.41E-02
51GO:0009055: electron carrier activity3.90E-02
52GO:0004519: endonuclease activity3.93E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I3.23E-15
2GO:0009535: chloroplast thylakoid membrane2.03E-14
3GO:0030076: light-harvesting complex2.39E-14
4GO:0009941: chloroplast envelope8.52E-14
5GO:0010287: plastoglobule1.16E-13
6GO:0009579: thylakoid6.17E-13
7GO:0009534: chloroplast thylakoid2.73E-11
8GO:0009523: photosystem II2.85E-08
9GO:0009507: chloroplast2.55E-07
10GO:0009517: PSII associated light-harvesting complex II1.24E-06
11GO:0042651: thylakoid membrane7.08E-05
12GO:0009898: cytoplasmic side of plasma membrane2.76E-04
13GO:0030660: Golgi-associated vesicle membrane2.76E-04
14GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.76E-04
15GO:0009986: cell surface6.07E-04
16GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane6.99E-04
17GO:0009538: photosystem I reaction center6.99E-04
18GO:0005680: anaphase-promoting complex8.92E-04
19GO:0016604: nuclear body9.92E-04
20GO:0005765: lysosomal membrane1.20E-03
21GO:0016021: integral component of membrane1.32E-03
22GO:0031969: chloroplast membrane3.20E-03
23GO:0016020: membrane3.32E-03
24GO:0009570: chloroplast stroma7.84E-03
25GO:0010008: endosome membrane1.08E-02
26GO:0009706: chloroplast inner membrane1.20E-02
27GO:0005623: cell1.43E-02
28GO:0005886: plasma membrane3.20E-02
29GO:0005887: integral component of plasma membrane4.61E-02
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Gene type



Gene DE type