Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090470: shoot organ boundary specification0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:0015670: carbon dioxide transport0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0006429: leucyl-tRNA aminoacylation0.00E+00
13GO:0009773: photosynthetic electron transport in photosystem I4.19E-15
14GO:0015979: photosynthesis3.19E-08
15GO:0009658: chloroplast organization1.31E-06
16GO:1902326: positive regulation of chlorophyll biosynthetic process4.35E-06
17GO:0018298: protein-chromophore linkage6.47E-06
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.45E-05
19GO:0009735: response to cytokinin5.91E-05
20GO:0016120: carotene biosynthetic process9.74E-05
21GO:0006810: transport1.18E-04
22GO:0010196: nonphotochemical quenching2.51E-04
23GO:0051180: vitamin transport3.09E-04
24GO:0009443: pyridoxal 5'-phosphate salvage3.09E-04
25GO:0030974: thiamine pyrophosphate transport3.09E-04
26GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.09E-04
27GO:0071277: cellular response to calcium ion3.09E-04
28GO:0000481: maturation of 5S rRNA3.09E-04
29GO:1902458: positive regulation of stomatal opening3.09E-04
30GO:0034337: RNA folding3.09E-04
31GO:0009704: de-etiolation3.17E-04
32GO:0032544: plastid translation3.89E-04
33GO:0010027: thylakoid membrane organization6.61E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process6.76E-04
35GO:0080005: photosystem stoichiometry adjustment6.76E-04
36GO:0015893: drug transport6.76E-04
37GO:0034755: iron ion transmembrane transport6.76E-04
38GO:0009662: etioplast organization6.76E-04
39GO:0097054: L-glutamate biosynthetic process6.76E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process6.76E-04
41GO:0009767: photosynthetic electron transport chain9.61E-04
42GO:0006094: gluconeogenesis9.61E-04
43GO:0010207: photosystem II assembly1.08E-03
44GO:0019253: reductive pentose-phosphate cycle1.08E-03
45GO:0031022: nuclear migration along microfilament1.10E-03
46GO:0006000: fructose metabolic process1.10E-03
47GO:0006954: inflammatory response1.10E-03
48GO:0006518: peptide metabolic process1.10E-03
49GO:0071484: cellular response to light intensity1.57E-03
50GO:0009152: purine ribonucleotide biosynthetic process1.57E-03
51GO:0046653: tetrahydrofolate metabolic process1.57E-03
52GO:0006537: glutamate biosynthetic process1.57E-03
53GO:0009800: cinnamic acid biosynthetic process1.57E-03
54GO:0010731: protein glutathionylation1.57E-03
55GO:0055070: copper ion homeostasis1.57E-03
56GO:0046836: glycolipid transport1.57E-03
57GO:0010371: regulation of gibberellin biosynthetic process1.57E-03
58GO:0009768: photosynthesis, light harvesting in photosystem I1.64E-03
59GO:0009644: response to high light intensity1.89E-03
60GO:0016226: iron-sulfur cluster assembly1.97E-03
61GO:0009765: photosynthesis, light harvesting2.11E-03
62GO:0006109: regulation of carbohydrate metabolic process2.11E-03
63GO:0045727: positive regulation of translation2.11E-03
64GO:0015994: chlorophyll metabolic process2.11E-03
65GO:0019676: ammonia assimilation cycle2.11E-03
66GO:0006364: rRNA processing2.49E-03
67GO:0016117: carotenoid biosynthetic process2.53E-03
68GO:0032543: mitochondrial translation2.69E-03
69GO:0043097: pyrimidine nucleoside salvage2.69E-03
70GO:0010117: photoprotection2.69E-03
71GO:0006564: L-serine biosynthetic process2.69E-03
72GO:0009904: chloroplast accumulation movement2.69E-03
73GO:0045038: protein import into chloroplast thylakoid membrane2.69E-03
74GO:0035434: copper ion transmembrane transport2.69E-03
75GO:0006461: protein complex assembly2.69E-03
76GO:0009913: epidermal cell differentiation3.32E-03
77GO:0010190: cytochrome b6f complex assembly3.32E-03
78GO:0006559: L-phenylalanine catabolic process3.32E-03
79GO:0006206: pyrimidine nucleobase metabolic process3.32E-03
80GO:0018258: protein O-linked glycosylation via hydroxyproline3.32E-03
81GO:0010405: arabinogalactan protein metabolic process3.32E-03
82GO:0042549: photosystem II stabilization3.32E-03
83GO:0042026: protein refolding4.00E-03
84GO:0006458: 'de novo' protein folding4.00E-03
85GO:0009903: chloroplast avoidance movement4.00E-03
86GO:0080167: response to karrikin4.21E-03
87GO:0009645: response to low light intensity stimulus4.72E-03
88GO:0010444: guard mother cell differentiation4.72E-03
89GO:0006400: tRNA modification4.72E-03
90GO:0006401: RNA catabolic process4.72E-03
91GO:0048564: photosystem I assembly5.48E-03
92GO:0008610: lipid biosynthetic process5.48E-03
93GO:0009642: response to light intensity5.48E-03
94GO:0006605: protein targeting5.48E-03
95GO:0032508: DNA duplex unwinding5.48E-03
96GO:2000070: regulation of response to water deprivation5.48E-03
97GO:0009231: riboflavin biosynthetic process5.48E-03
98GO:0009058: biosynthetic process5.57E-03
99GO:0009699: phenylpropanoid biosynthetic process6.28E-03
100GO:0006002: fructose 6-phosphate metabolic process6.28E-03
101GO:0071482: cellular response to light stimulus6.28E-03
102GO:0015996: chlorophyll catabolic process6.28E-03
103GO:0007186: G-protein coupled receptor signaling pathway6.28E-03
104GO:0009657: plastid organization6.28E-03
105GO:0017004: cytochrome complex assembly6.28E-03
106GO:0009051: pentose-phosphate shunt, oxidative branch7.12E-03
107GO:0009821: alkaloid biosynthetic process7.12E-03
108GO:0006098: pentose-phosphate shunt7.12E-03
109GO:0090305: nucleic acid phosphodiester bond hydrolysis7.12E-03
110GO:0090333: regulation of stomatal closure7.12E-03
111GO:0000373: Group II intron splicing7.12E-03
112GO:0000902: cell morphogenesis7.12E-03
113GO:0055085: transmembrane transport7.81E-03
114GO:0010205: photoinhibition8.01E-03
115GO:0009638: phototropism8.01E-03
116GO:1900865: chloroplast RNA modification8.01E-03
117GO:0009853: photorespiration8.69E-03
118GO:0000038: very long-chain fatty acid metabolic process9.88E-03
119GO:0008285: negative regulation of cell proliferation9.88E-03
120GO:0043085: positive regulation of catalytic activity9.88E-03
121GO:0006879: cellular iron ion homeostasis9.88E-03
122GO:0018119: peptidyl-cysteine S-nitrosylation9.88E-03
123GO:0045037: protein import into chloroplast stroma1.09E-02
124GO:0005986: sucrose biosynthetic process1.19E-02
125GO:0010628: positive regulation of gene expression1.19E-02
126GO:0006006: glucose metabolic process1.19E-02
127GO:0009718: anthocyanin-containing compound biosynthetic process1.19E-02
128GO:0009636: response to toxic substance1.26E-02
129GO:0006541: glutamine metabolic process1.30E-02
130GO:0006855: drug transmembrane transport1.31E-02
131GO:0005985: sucrose metabolic process1.40E-02
132GO:0010025: wax biosynthetic process1.52E-02
133GO:0006636: unsaturated fatty acid biosynthetic process1.52E-02
134GO:0006833: water transport1.52E-02
135GO:0016575: histone deacetylation1.75E-02
136GO:0006418: tRNA aminoacylation for protein translation1.75E-02
137GO:0010073: meristem maintenance1.75E-02
138GO:0009416: response to light stimulus1.81E-02
139GO:0061077: chaperone-mediated protein folding1.87E-02
140GO:0031408: oxylipin biosynthetic process1.87E-02
141GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.88E-02
142GO:0035428: hexose transmembrane transport2.00E-02
143GO:0010227: floral organ abscission2.12E-02
144GO:0055114: oxidation-reduction process2.23E-02
145GO:0006817: phosphate ion transport2.25E-02
146GO:0042127: regulation of cell proliferation2.25E-02
147GO:0009306: protein secretion2.25E-02
148GO:0042335: cuticle development2.52E-02
149GO:0034220: ion transmembrane transport2.52E-02
150GO:0006520: cellular amino acid metabolic process2.66E-02
151GO:0006662: glycerol ether metabolic process2.66E-02
152GO:0010182: sugar mediated signaling pathway2.66E-02
153GO:0046323: glucose import2.66E-02
154GO:0032259: methylation2.78E-02
155GO:0015986: ATP synthesis coupled proton transport2.80E-02
156GO:0007018: microtubule-based movement2.80E-02
157GO:0009409: response to cold2.92E-02
158GO:0009791: post-embryonic development2.95E-02
159GO:0080156: mitochondrial mRNA modification3.09E-02
160GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.09E-02
161GO:0002229: defense response to oomycetes3.09E-02
162GO:0016032: viral process3.24E-02
163GO:0006413: translational initiation3.49E-02
164GO:0071805: potassium ion transmembrane transport3.70E-02
165GO:0007623: circadian rhythm3.74E-02
166GO:0009451: RNA modification3.82E-02
167GO:0001666: response to hypoxia4.02E-02
168GO:0015995: chlorophyll biosynthetic process4.51E-02
169GO:0030244: cellulose biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0046608: carotenoid isomerase activity0.00E+00
2GO:0045436: lycopene beta cyclase activity0.00E+00
3GO:0008859: exoribonuclease II activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0008974: phosphoribulokinase activity0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:1990534: thermospermine oxidase activity0.00E+00
16GO:0016168: chlorophyll binding3.73E-06
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.18E-05
18GO:0043495: protein anchor6.18E-05
19GO:0022891: substrate-specific transmembrane transporter activity2.01E-04
20GO:0019899: enzyme binding2.51E-04
21GO:0090422: thiamine pyrophosphate transporter activity3.09E-04
22GO:0009496: plastoquinol--plastocyanin reductase activity3.09E-04
23GO:0003867: 4-aminobutyrate transaminase activity3.09E-04
24GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.09E-04
25GO:0070006: metalloaminopeptidase activity3.09E-04
26GO:0005080: protein kinase C binding3.09E-04
27GO:0008242: omega peptidase activity3.09E-04
28GO:0016041: glutamate synthase (ferredoxin) activity3.09E-04
29GO:0004328: formamidase activity3.09E-04
30GO:0004033: aldo-keto reductase (NADP) activity3.17E-04
31GO:0048038: quinone binding4.12E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.76E-04
33GO:0018708: thiol S-methyltransferase activity6.76E-04
34GO:0034722: gamma-glutamyl-peptidase activity6.76E-04
35GO:0008967: phosphoglycolate phosphatase activity6.76E-04
36GO:0047746: chlorophyllase activity6.76E-04
37GO:0004617: phosphoglycerate dehydrogenase activity6.76E-04
38GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.76E-04
39GO:0004222: metalloendopeptidase activity1.04E-03
40GO:0016531: copper chaperone activity1.10E-03
41GO:0019829: cation-transporting ATPase activity1.10E-03
42GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.10E-03
43GO:0045548: phenylalanine ammonia-lyase activity1.10E-03
44GO:0002161: aminoacyl-tRNA editing activity1.10E-03
45GO:0032947: protein complex scaffold1.10E-03
46GO:0003935: GTP cyclohydrolase II activity1.10E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.10E-03
48GO:0070402: NADPH binding1.10E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.10E-03
50GO:0031409: pigment binding1.34E-03
51GO:0005528: FK506 binding1.49E-03
52GO:0051536: iron-sulfur cluster binding1.49E-03
53GO:0017089: glycolipid transporter activity1.57E-03
54GO:0048487: beta-tubulin binding1.57E-03
55GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.57E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.57E-03
57GO:0015079: potassium ion transmembrane transporter activity1.64E-03
58GO:0004176: ATP-dependent peptidase activity1.80E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity2.11E-03
60GO:0051861: glycolipid binding2.11E-03
61GO:0005215: transporter activity2.20E-03
62GO:0051538: 3 iron, 4 sulfur cluster binding2.69E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity3.32E-03
64GO:0004332: fructose-bisphosphate aldolase activity3.32E-03
65GO:0004849: uridine kinase activity4.00E-03
66GO:0043022: ribosome binding5.48E-03
67GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.28E-03
68GO:0015078: hydrogen ion transmembrane transporter activity6.28E-03
69GO:0005375: copper ion transmembrane transporter activity6.28E-03
70GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.28E-03
71GO:0008135: translation factor activity, RNA binding6.28E-03
72GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.12E-03
73GO:0015238: drug transmembrane transporter activity7.20E-03
74GO:0005381: iron ion transmembrane transporter activity8.01E-03
75GO:0016844: strictosidine synthase activity8.01E-03
76GO:0008047: enzyme activator activity8.92E-03
77GO:0016491: oxidoreductase activity9.70E-03
78GO:0015386: potassium:proton antiporter activity9.88E-03
79GO:0004177: aminopeptidase activity9.88E-03
80GO:0044183: protein binding involved in protein folding9.88E-03
81GO:0004364: glutathione transferase activity1.08E-02
82GO:0000175: 3'-5'-exoribonuclease activity1.19E-02
83GO:0004565: beta-galactosidase activity1.19E-02
84GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.19E-02
85GO:0004022: alcohol dehydrogenase (NAD) activity1.19E-02
86GO:0005315: inorganic phosphate transmembrane transporter activity1.19E-02
87GO:0005198: structural molecule activity1.26E-02
88GO:0008168: methyltransferase activity1.30E-02
89GO:0008131: primary amine oxidase activity1.30E-02
90GO:0008266: poly(U) RNA binding1.30E-02
91GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.31E-02
92GO:0008146: sulfotransferase activity1.40E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.52E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.52E-02
95GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.52E-02
96GO:0004857: enzyme inhibitor activity1.63E-02
97GO:0004407: histone deacetylase activity1.63E-02
98GO:0043424: protein histidine kinase binding1.75E-02
99GO:0004540: ribonuclease activity1.87E-02
100GO:0047134: protein-disulfide reductase activity2.39E-02
101GO:0004812: aminoacyl-tRNA ligase activity2.39E-02
102GO:0019843: rRNA binding2.71E-02
103GO:0004791: thioredoxin-disulfide reductase activity2.80E-02
104GO:0005355: glucose transmembrane transporter activity2.80E-02
105GO:0050662: coenzyme binding2.80E-02
106GO:0030246: carbohydrate binding2.81E-02
107GO:0003723: RNA binding2.94E-02
108GO:0004518: nuclease activity3.24E-02
109GO:0004519: endonuclease activity3.26E-02
110GO:0000156: phosphorelay response regulator activity3.39E-02
111GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.39E-02
112GO:0015297: antiporter activity3.57E-02
113GO:0008237: metallopeptidase activity3.70E-02
114GO:0016597: amino acid binding3.86E-02
115GO:0046872: metal ion binding3.90E-02
116GO:0015250: water channel activity4.02E-02
117GO:0003743: translation initiation factor activity4.36E-02
118GO:0004721: phosphoprotein phosphatase activity4.51E-02
119GO:0042802: identical protein binding4.73E-02
120GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.73E-02
121GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast4.41E-59
4GO:0009535: chloroplast thylakoid membrane6.01E-37
5GO:0009534: chloroplast thylakoid2.65E-17
6GO:0009570: chloroplast stroma1.13E-16
7GO:0009941: chloroplast envelope1.53E-16
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.51E-14
9GO:0009579: thylakoid2.38E-11
10GO:0031969: chloroplast membrane1.05E-09
11GO:0009543: chloroplast thylakoid lumen6.58E-08
12GO:0016021: integral component of membrane7.10E-08
13GO:0042651: thylakoid membrane5.45E-06
14GO:0009523: photosystem II2.64E-05
15GO:0031977: thylakoid lumen2.12E-04
16GO:0009782: photosystem I antenna complex3.09E-04
17GO:0010319: stromule5.71E-04
18GO:0010287: plastoglobule8.84E-04
19GO:0009528: plastid inner membrane1.10E-03
20GO:0030076: light-harvesting complex1.21E-03
21GO:0009654: photosystem II oxygen evolving complex1.64E-03
22GO:0009527: plastid outer membrane2.11E-03
23GO:0000178: exosome (RNase complex)2.69E-03
24GO:0009512: cytochrome b6f complex2.69E-03
25GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.32E-03
26GO:0019898: extrinsic component of membrane3.39E-03
27GO:0009706: chloroplast inner membrane3.91E-03
28GO:0009533: chloroplast stromal thylakoid4.72E-03
29GO:0032040: small-subunit processome1.09E-02
30GO:0030095: chloroplast photosystem II1.30E-02
31GO:0016020: membrane1.47E-02
32GO:0009532: plastid stroma1.87E-02
33GO:0005871: kinesin complex2.39E-02
34GO:0048046: apoplast2.78E-02
35GO:0005623: cell2.79E-02
36GO:0009522: photosystem I2.80E-02
37GO:0030529: intracellular ribonucleoprotein complex4.02E-02
38GO:0000932: P-body4.02E-02
39GO:0009707: chloroplast outer membrane4.85E-02
40GO:0046658: anchored component of plasma membrane4.93E-02
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Gene type



Gene DE type