Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006182: cGMP biosynthetic process0.00E+00
2GO:0000162: tryptophan biosynthetic process2.74E-10
3GO:0043069: negative regulation of programmed cell death9.96E-07
4GO:0052544: defense response by callose deposition in cell wall1.31E-06
5GO:0009617: response to bacterium4.93E-06
6GO:0071456: cellular response to hypoxia8.04E-06
7GO:0009697: salicylic acid biosynthetic process8.97E-06
8GO:0009759: indole glucosinolate biosynthetic process1.38E-05
9GO:0009851: auxin biosynthetic process2.04E-05
10GO:0009627: systemic acquired resistance4.92E-05
11GO:0051245: negative regulation of cellular defense response7.39E-05
12GO:0010266: response to vitamin B17.39E-05
13GO:0042742: defense response to bacterium8.63E-05
14GO:0009682: induced systemic resistance9.76E-05
15GO:0042343: indole glucosinolate metabolic process1.70E-04
16GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.77E-04
17GO:0019441: tryptophan catabolic process to kynurenine1.77E-04
18GO:0080183: response to photooxidative stress1.77E-04
19GO:0006612: protein targeting to membrane4.32E-04
20GO:0048530: fruit morphogenesis4.32E-04
21GO:0019438: aromatic compound biosynthetic process4.32E-04
22GO:0048830: adventitious root development5.75E-04
23GO:0010363: regulation of plant-type hypersensitive response5.75E-04
24GO:0010600: regulation of auxin biosynthetic process5.75E-04
25GO:0080142: regulation of salicylic acid biosynthetic process5.75E-04
26GO:0010222: stem vascular tissue pattern formation5.75E-04
27GO:0030308: negative regulation of cell growth7.29E-04
28GO:0006564: L-serine biosynthetic process7.29E-04
29GO:0007029: endoplasmic reticulum organization7.29E-04
30GO:0050832: defense response to fungus9.02E-04
31GO:0010311: lateral root formation1.02E-03
32GO:0042372: phylloquinone biosynthetic process1.06E-03
33GO:0010199: organ boundary specification between lateral organs and the meristem1.06E-03
34GO:0006499: N-terminal protein myristoylation1.07E-03
35GO:0080027: response to herbivore1.24E-03
36GO:0009061: anaerobic respiration1.43E-03
37GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.43E-03
38GO:0009808: lignin metabolic process1.63E-03
39GO:0007338: single fertilization1.83E-03
40GO:0010112: regulation of systemic acquired resistance1.83E-03
41GO:0008202: steroid metabolic process2.05E-03
42GO:0055114: oxidation-reduction process2.10E-03
43GO:0032259: methylation2.21E-03
44GO:0009688: abscisic acid biosynthetic process2.28E-03
45GO:0009641: shade avoidance2.28E-03
46GO:0009684: indoleacetic acid biosynthetic process2.51E-03
47GO:0009620: response to fungus2.70E-03
48GO:0002213: defense response to insect2.75E-03
49GO:0071365: cellular response to auxin stimulus2.75E-03
50GO:0000266: mitochondrial fission2.75E-03
51GO:0006952: defense response3.08E-03
52GO:0002237: response to molecule of bacterial origin3.25E-03
53GO:0009863: salicylic acid mediated signaling pathway4.06E-03
54GO:0080147: root hair cell development4.06E-03
55GO:0009735: response to cytokinin4.30E-03
56GO:0048278: vesicle docking4.63E-03
57GO:0031348: negative regulation of defense response4.93E-03
58GO:0006012: galactose metabolic process5.23E-03
59GO:0010584: pollen exine formation5.54E-03
60GO:0010118: stomatal movement6.18E-03
61GO:0046323: glucose import6.51E-03
62GO:0061025: membrane fusion6.84E-03
63GO:0016032: viral process7.89E-03
64GO:0009630: gravitropism7.89E-03
65GO:1901657: glycosyl compound metabolic process8.25E-03
66GO:0009567: double fertilization forming a zygote and endosperm8.61E-03
67GO:0019760: glucosinolate metabolic process8.61E-03
68GO:0009723: response to ethylene9.05E-03
69GO:0009615: response to virus9.74E-03
70GO:0009816: defense response to bacterium, incompatible interaction1.01E-02
71GO:0006906: vesicle fusion1.05E-02
72GO:0009817: defense response to fungus, incompatible interaction1.17E-02
73GO:0010043: response to zinc ion1.30E-02
74GO:0009867: jasmonic acid mediated signaling pathway1.39E-02
75GO:0045087: innate immune response1.39E-02
76GO:0006099: tricarboxylic acid cycle1.43E-02
77GO:0006887: exocytosis1.57E-02
78GO:0051707: response to other organism1.66E-02
79GO:0010114: response to red light1.66E-02
80GO:0009846: pollen germination1.95E-02
81GO:0009809: lignin biosynthetic process2.05E-02
82GO:0046686: response to cadmium ion2.07E-02
83GO:0009742: brassinosteroid mediated signaling pathway2.75E-02
84GO:0040008: regulation of growth3.77E-02
85GO:0010150: leaf senescence3.89E-02
86GO:0007166: cell surface receptor signaling pathway4.28E-02
87GO:0006508: proteolysis4.79E-02
RankGO TermAdjusted P value
1GO:0015575: mannitol transmembrane transporter activity0.00E+00
2GO:0015591: D-ribose transmembrane transporter activity0.00E+00
3GO:0015148: D-xylose transmembrane transporter activity0.00E+00
4GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
5GO:0015576: sorbitol transmembrane transporter activity0.00E+00
6GO:0004834: tryptophan synthase activity5.37E-06
7GO:0004425: indole-3-glycerol-phosphate synthase activity7.39E-05
8GO:0033984: indole-3-glycerol-phosphate lyase activity7.39E-05
9GO:0008909: isochorismate synthase activity7.39E-05
10GO:0015168: glycerol transmembrane transporter activity7.39E-05
11GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity7.39E-05
12GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity7.39E-05
13GO:0008171: O-methyltransferase activity8.25E-05
14GO:0032934: sterol binding1.77E-04
15GO:0004061: arylformamidase activity1.77E-04
16GO:0004566: beta-glucuronidase activity1.77E-04
17GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.99E-04
18GO:0004383: guanylate cyclase activity2.99E-04
19GO:0016595: glutamate binding2.99E-04
20GO:0004049: anthranilate synthase activity2.99E-04
21GO:0005354: galactose transmembrane transporter activity4.32E-04
22GO:0016656: monodehydroascorbate reductase (NADH) activity4.32E-04
23GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.75E-04
24GO:0004031: aldehyde oxidase activity5.75E-04
25GO:0050302: indole-3-acetaldehyde oxidase activity5.75E-04
26GO:0015145: monosaccharide transmembrane transporter activity7.29E-04
27GO:0005496: steroid binding7.29E-04
28GO:0008757: S-adenosylmethionine-dependent methyltransferase activity9.27E-04
29GO:0004656: procollagen-proline 4-dioxygenase activity1.06E-03
30GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.12E-03
31GO:0050660: flavin adenine dinucleotide binding1.31E-03
32GO:0004034: aldose 1-epimerase activity1.43E-03
33GO:0004033: aldo-keto reductase (NADP) activity1.43E-03
34GO:0008142: oxysterol binding1.63E-03
35GO:0051537: 2 iron, 2 sulfur cluster binding1.68E-03
36GO:0071949: FAD binding1.83E-03
37GO:0004713: protein tyrosine kinase activity2.28E-03
38GO:0008234: cysteine-type peptidase activity2.30E-03
39GO:0005506: iron ion binding2.46E-03
40GO:0009055: electron carrier activity2.55E-03
41GO:0004022: alcohol dehydrogenase (NAD) activity3.00E-03
42GO:0008061: chitin binding3.51E-03
43GO:0031418: L-ascorbic acid binding4.06E-03
44GO:0004540: ribonuclease activity4.63E-03
45GO:0016853: isomerase activity6.84E-03
46GO:0010181: FMN binding6.84E-03
47GO:0005355: glucose transmembrane transporter activity6.84E-03
48GO:0008168: methyltransferase activity7.53E-03
49GO:0043531: ADP binding8.58E-03
50GO:0102483: scopolin beta-glucosidase activity1.09E-02
51GO:0030247: polysaccharide binding1.09E-02
52GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.26E-02
53GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.39E-02
54GO:0008422: beta-glucosidase activity1.48E-02
55GO:0000149: SNARE binding1.48E-02
56GO:0005484: SNAP receptor activity1.66E-02
57GO:0020037: heme binding2.10E-02
58GO:0015035: protein disulfide oxidoreductase activity2.69E-02
59GO:0016746: transferase activity, transferring acyl groups2.69E-02
60GO:0004674: protein serine/threonine kinase activity2.79E-02
61GO:0030246: carbohydrate binding3.43E-02
62GO:0015144: carbohydrate transmembrane transporter activity3.52E-02
63GO:0019825: oxygen binding3.63E-02
64GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.70E-02
65GO:0005351: sugar:proton symporter activity3.83E-02
66GO:0008017: microtubule binding4.02E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane6.05E-05
2GO:0045252: oxoglutarate dehydrogenase complex7.39E-05
3GO:0005950: anthranilate synthase complex1.77E-04
4GO:0005783: endoplasmic reticulum4.23E-04
5GO:0005765: lysosomal membrane2.51E-03
6GO:0009570: chloroplast stroma4.29E-03
7GO:0005886: plasma membrane4.49E-03
8GO:0031201: SNARE complex1.57E-02
9GO:0010008: endosome membrane2.37E-02
10GO:0012505: endomembrane system2.58E-02
11GO:0005794: Golgi apparatus2.96E-02
12GO:0009524: phragmoplast3.21E-02
13GO:0016020: membrane4.76E-02
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Gene type



Gene DE type