co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G14540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051503: adenine nucleotide transport	0.00E+00
2	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
3	GO:0071482: cellular response to light stimulus	1.03E-05
4	GO:0006352: DNA-templated transcription, initiation	2.37E-05
5	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.88E-05
6	GO:0009767: photosynthetic electron transport chain	3.28E-05
7	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.28E-05
8	GO:0033014: tetrapyrrole biosynthetic process	1.89E-04
9	GO:2001141: regulation of RNA biosynthetic process	1.89E-04
10	GO:0046902: regulation of mitochondrial membrane permeability	1.89E-04
11	GO:0071483: cellular response to blue light	2.57E-04
12	GO:0009902: chloroplast relocation	2.57E-04
13	GO:0010236: plastoquinone biosynthetic process	3.30E-04
14	GO:1902183: regulation of shoot apical meristem development	3.30E-04
15	GO:0010100: negative regulation of photomorphogenesis	7.44E-04
16	GO:2000024: regulation of leaf development	8.35E-04
17	GO:0006783: heme biosynthetic process	8.35E-04
18	GO:0000902: cell morphogenesis	8.35E-04
19	GO:0006779: porphyrin-containing compound biosynthetic process	9.29E-04
20	GO:0006535: cysteine biosynthetic process from serine	1.03E-03
21	GO:0019684: photosynthesis, light reaction	1.13E-03
22	GO:0045037: protein import into chloroplast stroma	1.23E-03
23	GO:0090351: seedling development	1.56E-03
24	GO:0009944: polarity specification of adaxial/abaxial axis	1.79E-03
25	GO:0019344: cysteine biosynthetic process	1.79E-03
26	GO:0080092: regulation of pollen tube growth	2.17E-03
27	GO:0006730: one-carbon metabolic process	2.17E-03
28	GO:0006810: transport	4.04E-03
29	GO:0006629: lipid metabolic process	4.25E-03
30	GO:0008152: metabolic process	4.68E-03
31	GO:0009744: response to sucrose	7.08E-03
32	GO:0048367: shoot system development	1.00E-02
33	GO:0048316: seed development	1.00E-02
34	GO:0018105: peptidyl-serine phosphorylation	1.14E-02
35	GO:0009790: embryo development	1.46E-02
36	GO:0009739: response to gibberellin	1.78E-02
37	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.12E-02
38	GO:0009658: chloroplast organization	2.24E-02
39	GO:0009723: response to ethylene	2.48E-02
40	GO:0080167: response to karrikin	2.61E-02
41	GO:0046777: protein autophosphorylation	2.74E-02
42	GO:0009751: response to salicylic acid	3.41E-02
43	GO:0048364: root development	3.55E-02
44	GO:0009753: response to jasmonic acid	3.62E-02
45	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.21E-02
46	GO:0009735: response to cytokinin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0001053: plastid sigma factor activity	1.08E-06
2	GO:0016987: sigma factor activity	1.08E-06
3	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.23E-06
4	GO:0004325: ferrochelatase activity	2.88E-05
5	GO:0050017: L-3-cyanoalanine synthase activity	7.28E-05
6	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.28E-05
7	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.57E-04
8	GO:0005471: ATP:ADP antiporter activity	3.30E-04
9	GO:0008374: O-acyltransferase activity	3.30E-04
10	GO:0080030: methyl indole-3-acetate esterase activity	4.06E-04
11	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.86E-04
12	GO:0004124: cysteine synthase activity	4.86E-04
13	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.49E-04
14	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.13E-03
15	GO:0008081: phosphoric diester hydrolase activity	1.34E-03
16	GO:0005528: FK506 binding	1.79E-03
17	GO:0005509: calcium ion binding	2.25E-03
18	GO:0016597: amino acid binding	4.05E-03
19	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.54E-03
20	GO:0004683: calmodulin-dependent protein kinase activity	4.71E-03
21	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.88E-03
22	GO:0000987: core promoter proximal region sequence-specific DNA binding	6.13E-03
23	GO:0005198: structural molecule activity	7.68E-03
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.88E-03
25	GO:0016740: transferase activity	9.16E-03
26	GO:0016746: transferase activity, transferring acyl groups	1.14E-02
27	GO:0016758: transferase activity, transferring hexosyl groups	1.28E-02
28	GO:0030170: pyridoxal phosphate binding	1.41E-02
29	GO:0008565: protein transporter activity	1.48E-02
30	GO:0008194: UDP-glycosyltransferase activity	1.78E-02
31	GO:0016788: hydrolase activity, acting on ester bonds	2.27E-02
32	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.97E-02
33	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.20E-02
34	GO:0016787: hydrolase activity	3.27E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	2.14E-06
3	GO:0009507: chloroplast	1.43E-05
4	GO:0030095: chloroplast photosystem II	3.80E-05
5	GO:0009654: photosystem II oxygen evolving complex	6.29E-05
6	GO:0009543: chloroplast thylakoid lumen	7.85E-05
7	GO:0019898: extrinsic component of membrane	1.44E-04
8	GO:0055035: plastid thylakoid membrane	3.30E-04
9	GO:0005623: cell	1.15E-03
10	GO:0031969: chloroplast membrane	2.89E-03
11	GO:0010319: stromule	3.89E-03
12	GO:0009941: chloroplast envelope	4.03E-03
13	GO:0009707: chloroplast outer membrane	5.05E-03
14	GO:0009570: chloroplast stroma	6.68E-03
15	GO:0009534: chloroplast thylakoid	9.07E-03
16	GO:0009706: chloroplast inner membrane	1.12E-02
17	GO:0009536: plastid	1.87E-02
18	GO:0005743: mitochondrial inner membrane	3.27E-02