Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
3GO:1902171: regulation of tocopherol cyclase activity0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0033231: carbohydrate export0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0015995: chlorophyll biosynthetic process1.74E-05
9GO:0000476: maturation of 4.5S rRNA4.31E-05
10GO:0000967: rRNA 5'-end processing4.31E-05
11GO:0046467: membrane lipid biosynthetic process4.31E-05
12GO:0010450: inflorescence meristem growth4.31E-05
13GO:0000305: response to oxygen radical4.31E-05
14GO:1902334: fructose export from vacuole to cytoplasm4.31E-05
15GO:0015755: fructose transport4.31E-05
16GO:0034470: ncRNA processing1.07E-04
17GO:0045165: cell fate commitment1.84E-04
18GO:0009734: auxin-activated signaling pathway2.00E-04
19GO:0006749: glutathione metabolic process3.64E-04
20GO:1902183: regulation of shoot apical meristem development4.63E-04
21GO:0010158: abaxial cell fate specification4.63E-04
22GO:0009643: photosynthetic acclimation5.67E-04
23GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.67E-04
24GO:0009228: thiamine biosynthetic process5.67E-04
25GO:0009942: longitudinal axis specification6.76E-04
26GO:0010019: chloroplast-nucleus signaling pathway6.76E-04
27GO:1900056: negative regulation of leaf senescence7.90E-04
28GO:0009926: auxin polar transport7.97E-04
29GO:0050821: protein stabilization9.08E-04
30GO:0005978: glycogen biosynthetic process9.08E-04
31GO:0046620: regulation of organ growth9.08E-04
32GO:0010100: negative regulation of photomorphogenesis1.03E-03
33GO:0007389: pattern specification process1.03E-03
34GO:0010093: specification of floral organ identity1.03E-03
35GO:0071482: cellular response to light stimulus1.03E-03
36GO:0009657: plastid organization1.03E-03
37GO:2000024: regulation of leaf development1.16E-03
38GO:0010380: regulation of chlorophyll biosynthetic process1.29E-03
39GO:0006995: cellular response to nitrogen starvation1.43E-03
40GO:0043085: positive regulation of catalytic activity1.57E-03
41GO:0009750: response to fructose1.57E-03
42GO:0010207: photosystem II assembly2.03E-03
43GO:0009933: meristem structural organization2.03E-03
44GO:0010030: positive regulation of seed germination2.19E-03
45GO:0006636: unsaturated fatty acid biosynthetic process2.36E-03
46GO:0006833: water transport2.36E-03
47GO:0034976: response to endoplasmic reticulum stress2.36E-03
48GO:0009944: polarity specification of adaxial/abaxial axis2.52E-03
49GO:0007623: circadian rhythm2.52E-03
50GO:0006289: nucleotide-excision repair2.52E-03
51GO:0016114: terpenoid biosynthetic process2.88E-03
52GO:0051260: protein homooligomerization2.88E-03
53GO:0070417: cellular response to cold3.63E-03
54GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.63E-03
55GO:0034220: ion transmembrane transport3.82E-03
56GO:0042631: cellular response to water deprivation3.82E-03
57GO:0009658: chloroplast organization3.88E-03
58GO:0010154: fruit development4.02E-03
59GO:0009646: response to absence of light4.23E-03
60GO:0019252: starch biosynthetic process4.43E-03
61GO:0010583: response to cyclopentenone4.86E-03
62GO:0010252: auxin homeostasis5.30E-03
63GO:0045454: cell redox homeostasis5.75E-03
64GO:0006629: lipid metabolic process7.08E-03
65GO:0007568: aging7.95E-03
66GO:0009910: negative regulation of flower development7.95E-03
67GO:0009631: cold acclimation7.95E-03
68GO:0034599: cellular response to oxidative stress8.74E-03
69GO:0010114: response to red light1.01E-02
70GO:0006364: rRNA processing1.25E-02
71GO:0009585: red, far-red light phototransduction1.25E-02
72GO:0006813: potassium ion transport1.25E-02
73GO:0006857: oligopeptide transport1.31E-02
74GO:0009909: regulation of flower development1.34E-02
75GO:0006417: regulation of translation1.34E-02
76GO:0055085: transmembrane transport1.60E-02
77GO:0006396: RNA processing1.64E-02
78GO:0006633: fatty acid biosynthetic process2.21E-02
79GO:0040008: regulation of growth2.29E-02
80GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.56E-02
81GO:0009733: response to auxin2.87E-02
82GO:0042254: ribosome biogenesis3.27E-02
83GO:0009723: response to ethylene3.58E-02
84GO:0006810: transport3.75E-02
85GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.85E-02
86GO:0015979: photosynthesis4.13E-02
87GO:0006869: lipid transport4.56E-02
88GO:0032259: methylation4.81E-02
89GO:0007275: multicellular organism development4.99E-02
RankGO TermAdjusted P value
1GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
2GO:0015284: fructose uniporter activity0.00E+00
3GO:0046906: tetrapyrrole binding4.31E-05
4GO:0005353: fructose transmembrane transporter activity1.07E-04
5GO:0004362: glutathione-disulfide reductase activity1.07E-04
6GO:0016868: intramolecular transferase activity, phosphotransferases1.07E-04
7GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity1.07E-04
8GO:0004312: fatty acid synthase activity1.07E-04
9GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.84E-04
10GO:0022890: inorganic cation transmembrane transporter activity2.70E-04
11GO:0070628: proteasome binding3.64E-04
12GO:0008878: glucose-1-phosphate adenylyltransferase activity3.64E-04
13GO:0016846: carbon-sulfur lyase activity4.63E-04
14GO:0031593: polyubiquitin binding5.67E-04
15GO:0035673: oligopeptide transmembrane transporter activity5.67E-04
16GO:0019899: enzyme binding7.90E-04
17GO:0016298: lipase activity1.09E-03
18GO:0000989: transcription factor activity, transcription factor binding1.16E-03
19GO:0009672: auxin:proton symporter activity1.29E-03
20GO:0019904: protein domain specific binding1.57E-03
21GO:0015386: potassium:proton antiporter activity1.57E-03
22GO:0015198: oligopeptide transporter activity1.72E-03
23GO:0010329: auxin efflux transmembrane transporter activity1.87E-03
24GO:0051119: sugar transmembrane transporter activity2.19E-03
25GO:0003954: NADH dehydrogenase activity2.52E-03
26GO:0043130: ubiquitin binding2.52E-03
27GO:0015079: potassium ion transmembrane transporter activity2.70E-03
28GO:0003756: protein disulfide isomerase activity3.43E-03
29GO:0003727: single-stranded RNA binding3.43E-03
30GO:0015299: solute:proton antiporter activity4.23E-03
31GO:0003684: damaged DNA binding5.30E-03
32GO:0015250: water channel activity5.98E-03
33GO:0004712: protein serine/threonine/tyrosine kinase activity9.01E-03
34GO:0050661: NADP binding9.28E-03
35GO:0008289: lipid binding9.85E-03
36GO:0043621: protein self-association1.07E-02
37GO:0015144: carbohydrate transmembrane transporter activity2.13E-02
38GO:0005515: protein binding2.17E-02
39GO:0005351: sugar:proton symporter activity2.32E-02
40GO:0003743: translation initiation factor activity2.64E-02
41GO:0005215: transporter activity2.83E-02
42GO:0008168: methyltransferase activity3.14E-02
43GO:0046982: protein heterodimerization activity3.18E-02
44GO:0050660: flavin adenine dinucleotide binding3.58E-02
RankGO TermAdjusted P value
1GO:0009534: chloroplast thylakoid4.38E-05
2GO:0009941: chloroplast envelope1.05E-04
3GO:0031304: intrinsic component of mitochondrial inner membrane1.07E-04
4GO:0009507: chloroplast1.43E-04
5GO:0009570: chloroplast stroma2.45E-04
6GO:0031969: chloroplast membrane5.97E-04
7GO:0016602: CCAAT-binding factor complex1.87E-03
8GO:0009535: chloroplast thylakoid membrane2.90E-03
9GO:0031977: thylakoid lumen9.56E-03
10GO:0005887: integral component of plasma membrane9.61E-03
11GO:0009706: chloroplast inner membrane1.60E-02
12GO:0010287: plastoglobule1.81E-02
13GO:0009543: chloroplast thylakoid lumen1.88E-02
14GO:0005623: cell1.91E-02
15GO:0009705: plant-type vacuole membrane2.36E-02
16GO:0005886: plasma membrane4.82E-02
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Gene type



Gene DE type