co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010394: homogalacturonan metabolic process	0.00E+00
2	GO:0080094: response to trehalose-6-phosphate	0.00E+00
3	GO:0006633: fatty acid biosynthetic process	1.76E-08
4	GO:0010411: xyloglucan metabolic process	1.17E-07
5	GO:0071555: cell wall organization	6.54E-07
6	GO:0042546: cell wall biogenesis	6.70E-07
7	GO:0045489: pectin biosynthetic process	9.58E-07
8	GO:0006085: acetyl-CoA biosynthetic process	1.12E-05
9	GO:0010583: response to cyclopentenone	6.25E-05
10	GO:0010442: guard cell morphogenesis	1.14E-04
11	GO:0071370: cellular response to gibberellin stimulus	1.14E-04
12	GO:0042547: cell wall modification involved in multidimensional cell growth	1.14E-04
13	GO:0045488: pectin metabolic process	1.14E-04
14	GO:0006436: tryptophanyl-tRNA aminoacylation	1.14E-04
15	GO:0019510: S-adenosylhomocysteine catabolic process	1.14E-04
16	GO:0006169: adenosine salvage	1.14E-04
17	GO:0000038: very long-chain fatty acid metabolic process	1.82E-04
18	GO:0030036: actin cytoskeleton organization	2.41E-04
19	GO:0033353: S-adenosylmethionine cycle	2.65E-04
20	GO:0071258: cellular response to gravity	2.65E-04
21	GO:2000123: positive regulation of stomatal complex development	2.65E-04
22	GO:0010424: DNA methylation on cytosine within a CG sequence	2.65E-04
23	GO:0006152: purine nucleoside catabolic process	2.65E-04
24	GO:0052541: plant-type cell wall cellulose metabolic process	2.65E-04
25	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.65E-04
26	GO:0060919: auxin influx	2.65E-04
27	GO:0010025: wax biosynthetic process	3.44E-04
28	GO:0006833: water transport	3.44E-04
29	GO:0045793: positive regulation of cell size	4.38E-04
30	GO:0006065: UDP-glucuronate biosynthetic process	4.38E-04
31	GO:0015840: urea transport	4.38E-04
32	GO:0009294: DNA mediated transformation	5.51E-04
33	GO:0040007: growth	5.51E-04
34	GO:0080170: hydrogen peroxide transmembrane transport	6.29E-04
35	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.29E-04
36	GO:0051016: barbed-end actin filament capping	6.29E-04
37	GO:0000271: polysaccharide biosynthetic process	6.98E-04
38	GO:0034220: ion transmembrane transport	6.98E-04
39	GO:0042335: cuticle development	6.98E-04
40	GO:2000038: regulation of stomatal complex development	8.35E-04
41	GO:0044209: AMP salvage	1.05E-03
42	GO:0010375: stomatal complex patterning	1.05E-03
43	GO:0048359: mucilage metabolic process involved in seed coat development	1.05E-03
44	GO:0007267: cell-cell signaling	1.17E-03
45	GO:0009635: response to herbicide	1.29E-03
46	GO:0045490: pectin catabolic process	1.30E-03
47	GO:0009612: response to mechanical stimulus	1.54E-03
48	GO:0006694: steroid biosynthetic process	1.54E-03
49	GO:0009645: response to low light intensity stimulus	1.81E-03
50	GO:0045995: regulation of embryonic development	1.81E-03
51	GO:0030497: fatty acid elongation	1.81E-03
52	GO:0007568: aging	1.95E-03
53	GO:0045010: actin nucleation	2.09E-03
54	GO:0007155: cell adhesion	2.09E-03
55	GO:0016051: carbohydrate biosynthetic process	2.13E-03
56	GO:0009826: unidimensional cell growth	2.15E-03
57	GO:0009808: lignin metabolic process	2.39E-03
58	GO:0009932: cell tip growth	2.39E-03
59	GO:0006631: fatty acid metabolic process	2.52E-03
60	GO:0006754: ATP biosynthetic process	2.70E-03
61	GO:0048589: developmental growth	2.70E-03
62	GO:0015780: nucleotide-sugar transport	2.70E-03
63	GO:0055085: transmembrane transport	3.01E-03
64	GO:0006349: regulation of gene expression by genetic imprinting	3.02E-03
65	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.09E-03
66	GO:0043069: negative regulation of programmed cell death	3.36E-03
67	GO:0048829: root cap development	3.36E-03
68	GO:0010216: maintenance of DNA methylation	3.71E-03
69	GO:0006857: oligopeptide transport	3.93E-03
70	GO:0015706: nitrate transport	4.06E-03
71	GO:0050826: response to freezing	4.43E-03
72	GO:0010020: chloroplast fission	4.81E-03
73	GO:0006629: lipid metabolic process	4.85E-03
74	GO:0010167: response to nitrate	5.21E-03
75	GO:0005985: sucrose metabolic process	5.21E-03
76	GO:0006071: glycerol metabolic process	5.61E-03
77	GO:0007010: cytoskeleton organization	6.03E-03
78	GO:0006418: tRNA aminoacylation for protein translation	6.45E-03
79	GO:0010026: trichome differentiation	6.45E-03
80	GO:0007017: microtubule-based process	6.45E-03
81	GO:0003333: amino acid transmembrane transport	6.89E-03
82	GO:0030245: cellulose catabolic process	7.34E-03
83	GO:0006730: one-carbon metabolic process	7.34E-03
84	GO:0009814: defense response, incompatible interaction	7.34E-03
85	GO:0019722: calcium-mediated signaling	8.26E-03
86	GO:0016117: carotenoid biosynthetic process	8.74E-03
87	GO:0080022: primary root development	9.23E-03
88	GO:0009741: response to brassinosteroid	9.73E-03
89	GO:0009416: response to light stimulus	1.01E-02
90	GO:0007166: cell surface receptor signaling pathway	1.03E-02
91	GO:0009617: response to bacterium	1.08E-02
92	GO:0019252: starch biosynthetic process	1.08E-02
93	GO:0016132: brassinosteroid biosynthetic process	1.13E-02
94	GO:0071554: cell wall organization or biogenesis	1.13E-02
95	GO:0016032: viral process	1.18E-02
96	GO:0016126: sterol biosynthetic process	1.46E-02
97	GO:0009911: positive regulation of flower development	1.46E-02
98	GO:0042128: nitrate assimilation	1.58E-02
99	GO:0015995: chlorophyll biosynthetic process	1.64E-02
100	GO:0048481: plant ovule development	1.77E-02
101	GO:0048767: root hair elongation	1.83E-02
102	GO:0009813: flavonoid biosynthetic process	1.83E-02
103	GO:0010311: lateral root formation	1.83E-02
104	GO:0009834: plant-type secondary cell wall biogenesis	1.89E-02
105	GO:0009910: negative regulation of flower development	1.96E-02
106	GO:0006865: amino acid transport	2.02E-02
107	GO:0006839: mitochondrial transport	2.29E-02
108	GO:0009926: auxin polar transport	2.50E-02
109	GO:0051707: response to other organism	2.50E-02
110	GO:0008643: carbohydrate transport	2.65E-02
111	GO:0048367: shoot system development	3.57E-02
112	GO:0009734: auxin-activated signaling pathway	3.61E-02
113	GO:0009740: gibberellic acid mediated signaling pathway	3.81E-02
114	GO:0016569: covalent chromatin modification	3.81E-02
115	GO:0042545: cell wall modification	3.89E-02
116	GO:0006810: transport	3.95E-02
117	GO:0006468: protein phosphorylation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0047974: guanosine deaminase activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
6	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.61E-08
7	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.17E-07
8	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.46E-06
9	GO:0003878: ATP citrate synthase activity	5.94E-06
10	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.08E-05
11	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.08E-05
12	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.08E-05
13	GO:0009922: fatty acid elongase activity	1.85E-05
14	GO:0005200: structural constituent of cytoskeleton	8.30E-05
15	GO:0004830: tryptophan-tRNA ligase activity	1.14E-04
16	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.14E-04
17	GO:0004013: adenosylhomocysteinase activity	1.14E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	1.14E-04
19	GO:0004001: adenosine kinase activity	1.14E-04
20	GO:0005507: copper ion binding	1.51E-04
21	GO:0004312: fatty acid synthase activity	2.65E-04
22	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.38E-04
23	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.38E-04
24	GO:0005504: fatty acid binding	4.38E-04
25	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.07E-04
26	GO:0030570: pectate lyase activity	5.51E-04
27	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.29E-04
28	GO:0015204: urea transmembrane transporter activity	8.35E-04
29	GO:0010328: auxin influx transmembrane transporter activity	8.35E-04
30	GO:0045430: chalcone isomerase activity	8.35E-04
31	GO:0016829: lyase activity	9.65E-04
32	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.17E-03
33	GO:0015250: water channel activity	1.30E-03
34	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.54E-03
35	GO:0051753: mannan synthase activity	1.54E-03
36	GO:0004564: beta-fructofuranosidase activity	2.09E-03
37	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.70E-03
38	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.70E-03
39	GO:0015112: nitrate transmembrane transporter activity	3.02E-03
40	GO:0004575: sucrose alpha-glucosidase activity	3.02E-03
41	GO:0015293: symporter activity	3.07E-03
42	GO:0051287: NAD binding	3.30E-03
43	GO:0004650: polygalacturonase activity	4.76E-03
44	GO:0016758: transferase activity, transferring hexosyl groups	6.35E-03
45	GO:0008810: cellulase activity	7.79E-03
46	GO:0008514: organic anion transmembrane transporter activity	8.26E-03
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.39E-03
48	GO:0004812: aminoacyl-tRNA ligase activity	8.74E-03
49	GO:0030276: clathrin binding	9.73E-03
50	GO:0019901: protein kinase binding	1.08E-02
51	GO:0004672: protein kinase activity	1.09E-02
52	GO:0051015: actin filament binding	1.24E-02
53	GO:0016413: O-acetyltransferase activity	1.40E-02
54	GO:0005516: calmodulin binding	1.69E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.96E-02
56	GO:0009055: electron carrier activity	2.75E-02
57	GO:0005215: transporter activity	2.78E-02
58	GO:0015171: amino acid transmembrane transporter activity	3.33E-02
59	GO:0045330: aspartyl esterase activity	3.33E-02
60	GO:0016491: oxidoreductase activity	3.45E-02
61	GO:0045735: nutrient reservoir activity	3.49E-02
62	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.57E-02
63	GO:0005524: ATP binding	3.67E-02
64	GO:0030599: pectinesterase activity	3.81E-02
65	GO:0003779: actin binding	3.89E-02
66	GO:0016746: transferase activity, transferring acyl groups	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0031225: anchored component of membrane	4.91E-15
3	GO:0046658: anchored component of plasma membrane	7.94E-11
4	GO:0005886: plasma membrane	2.48E-09
5	GO:0048046: apoplast	2.94E-09
6	GO:0005618: cell wall	5.05E-09
7	GO:0005576: extracellular region	4.82E-08
8	GO:0009346: citrate lyase complex	5.94E-06
9	GO:0009505: plant-type cell wall	1.53E-05
10	GO:0000139: Golgi membrane	1.98E-05
11	GO:0016020: membrane	1.44E-04
12	GO:0005794: Golgi apparatus	3.49E-04
13	GO:0009506: plasmodesma	3.85E-04
14	GO:0016021: integral component of membrane	4.51E-04
15	GO:0005775: vacuolar lumen	6.29E-04
16	GO:0005774: vacuolar membrane	1.15E-03
17	GO:0010168: ER body	1.29E-03
18	GO:0042807: central vacuole	1.81E-03
19	GO:0000325: plant-type vacuole	1.95E-03
20	GO:0000326: protein storage vacuole	2.39E-03
21	GO:0045298: tubulin complex	2.70E-03
22	GO:0005773: vacuole	2.92E-03
23	GO:0005856: cytoskeleton	3.07E-03
24	GO:0005802: trans-Golgi network	4.28E-03
25	GO:0005768: endosome	5.20E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	5.21E-03
27	GO:0005875: microtubule associated complex	5.61E-03
28	GO:0030136: clathrin-coated vesicle	8.74E-03
29	GO:0005789: endoplasmic reticulum membrane	1.16E-02
30	GO:0009570: chloroplast stroma	1.35E-02
31	GO:0009941: chloroplast envelope	2.14E-02
32	GO:0031902: late endosome membrane	2.36E-02
33	GO:0005887: integral component of plasma membrane	3.48E-02
34	GO:0005783: endoplasmic reticulum	4.12E-02