co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032497: detection of lipopolysaccharide	0.00E+00
2	GO:0035266: meristem growth	2.76E-05
3	GO:0007292: female gamete generation	2.76E-05
4	GO:0010184: cytokinin transport	2.76E-05
5	GO:0046520: sphingoid biosynthetic process	2.76E-05
6	GO:0051788: response to misfolded protein	7.01E-05
7	GO:0060968: regulation of gene silencing	1.23E-04
8	GO:0006882: cellular zinc ion homeostasis	1.83E-04
9	GO:2001289: lipid X metabolic process	1.83E-04
10	GO:0015749: monosaccharide transport	1.83E-04
11	GO:0006878: cellular copper ion homeostasis	2.48E-04
12	GO:0045087: innate immune response	3.60E-04
13	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.92E-04
14	GO:0048827: phyllome development	3.92E-04
15	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	3.92E-04
16	GO:0048232: male gamete generation	3.92E-04
17	GO:0043248: proteasome assembly	3.92E-04
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.69E-04
19	GO:0098869: cellular oxidant detoxification	5.49E-04
20	GO:0009395: phospholipid catabolic process	5.49E-04
21	GO:0010078: maintenance of root meristem identity	6.32E-04
22	GO:0009808: lignin metabolic process	7.18E-04
23	GO:0001510: RNA methylation	7.18E-04
24	GO:0048367: shoot system development	7.46E-04
25	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.99E-04
26	GO:0048829: root cap development	9.92E-04
27	GO:0007064: mitotic sister chromatid cohesion	9.92E-04
28	GO:0010015: root morphogenesis	1.09E-03
29	GO:0009790: embryo development	1.24E-03
30	GO:0010102: lateral root morphogenesis	1.29E-03
31	GO:0009933: meristem structural organization	1.40E-03
32	GO:0090351: seedling development	1.50E-03
33	GO:0006863: purine nucleobase transport	1.62E-03
34	GO:0010468: regulation of gene expression	1.72E-03
35	GO:0030433: ubiquitin-dependent ERAD pathway	2.09E-03
36	GO:0006979: response to oxidative stress	2.35E-03
37	GO:0046323: glucose import	2.74E-03
38	GO:0048544: recognition of pollen	2.88E-03
39	GO:0006635: fatty acid beta-oxidation	3.16E-03
40	GO:0006914: autophagy	3.60E-03
41	GO:0048364: root development	4.20E-03
42	GO:0048573: photoperiodism, flowering	4.54E-03
43	GO:0006950: response to stress	4.54E-03
44	GO:0010311: lateral root formation	5.04E-03
45	GO:0006811: ion transport	5.21E-03
46	GO:0006499: N-terminal protein myristoylation	5.21E-03
47	GO:0006099: tricarboxylic acid cycle	5.91E-03
48	GO:0042542: response to hydrogen peroxide	6.64E-03
49	GO:0009640: photomorphogenesis	6.82E-03
50	GO:0009636: response to toxic substance	7.40E-03
51	GO:0009965: leaf morphogenesis	7.40E-03
52	GO:0000165: MAPK cascade	7.79E-03
53	GO:0006511: ubiquitin-dependent protein catabolic process	9.68E-03
54	GO:0009626: plant-type hypersensitive response	9.87E-03
55	GO:0009651: response to salt stress	1.08E-02
56	GO:0006396: RNA processing	1.10E-02
57	GO:0007623: circadian rhythm	1.58E-02
58	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.71E-02
59	GO:0006470: protein dephosphorylation	1.74E-02
60	GO:0009826: unidimensional cell growth	2.10E-02
61	GO:0046686: response to cadmium ion	2.26E-02
62	GO:0006970: response to osmotic stress	2.27E-02
63	GO:0048366: leaf development	2.42E-02
64	GO:0016192: vesicle-mediated transport	2.61E-02
65	GO:0046777: protein autophosphorylation	2.64E-02
66	GO:0044550: secondary metabolite biosynthetic process	2.67E-02
67	GO:0045454: cell redox homeostasis	2.86E-02
68	GO:0007165: signal transduction	3.02E-02
69	GO:0009408: response to heat	3.32E-02

Rank	GO Term	Adjusted P value
1	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
4	GO:0009679: hexose:proton symporter activity	2.76E-05
5	GO:0000170: sphingosine hydroxylase activity	2.76E-05
6	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.76E-05
7	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.76E-05
8	GO:0047209: coniferyl-alcohol glucosyltransferase activity	7.01E-05
9	GO:0004566: beta-glucuronidase activity	7.01E-05
10	GO:0042284: sphingolipid delta-4 desaturase activity	7.01E-05
11	GO:0004108: citrate (Si)-synthase activity	1.83E-04
12	GO:0015145: monosaccharide transmembrane transporter activity	3.18E-04
13	GO:0036402: proteasome-activating ATPase activity	3.92E-04
14	GO:0004602: glutathione peroxidase activity	4.69E-04
15	GO:0003950: NAD+ ADP-ribosyltransferase activity	4.69E-04
16	GO:0004525: ribonuclease III activity	6.32E-04
17	GO:0015144: carbohydrate transmembrane transporter activity	1.26E-03
18	GO:0005351: sugar:proton symporter activity	1.42E-03
19	GO:0017025: TBP-class protein binding	1.50E-03
20	GO:0043424: protein histidine kinase binding	1.85E-03
21	GO:0005345: purine nucleobase transmembrane transporter activity	1.85E-03
22	GO:0004707: MAP kinase activity	1.97E-03
23	GO:0005506: iron ion binding	2.28E-03
24	GO:0003993: acid phosphatase activity	5.91E-03
25	GO:0016301: kinase activity	7.39E-03
26	GO:0031625: ubiquitin protein ligase binding	9.01E-03
27	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.01E-02
28	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.01E-02
29	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.28E-02
30	GO:0008194: UDP-glycosyltransferase activity	1.71E-02
31	GO:0004674: protein serine/threonine kinase activity	1.75E-02
32	GO:0008168: methyltransferase activity	2.10E-02
33	GO:0004672: protein kinase activity	2.13E-02
34	GO:0046982: protein heterodimerization activity	2.13E-02
35	GO:0016788: hydrolase activity, acting on ester bonds	2.19E-02
36	GO:0003682: chromatin binding	2.24E-02
37	GO:0020037: heme binding	2.29E-02
38	GO:0004497: monooxygenase activity	2.51E-02
39	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.02E-02
40	GO:0004722: protein serine/threonine phosphatase activity	3.05E-02
41	GO:0016887: ATPase activity	4.53E-02
42	GO:0016757: transferase activity, transferring glycosyl groups	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005776: autophagosome	2.48E-04
2	GO:0031597: cytosolic proteasome complex	4.69E-04
3	GO:0016363: nuclear matrix	4.69E-04
4	GO:0031595: nuclear proteasome complex	5.49E-04
5	GO:0008540: proteasome regulatory particle, base subcomplex	8.99E-04
6	GO:0005765: lysosomal membrane	1.09E-03
7	GO:0005886: plasma membrane	1.45E-03
8	GO:0031410: cytoplasmic vesicle	2.09E-03
9	GO:0000786: nucleosome	5.55E-03
10	GO:0000502: proteasome complex	8.40E-03
11	GO:0016021: integral component of membrane	8.82E-03
12	GO:0010008: endosome membrane	9.65E-03
13	GO:0005774: vacuolar membrane	1.12E-02
14	GO:0005623: cell	1.28E-02
15	GO:0016020: membrane	1.94E-02
16	GO:0005789: endoplasmic reticulum membrane	2.21E-02
17	GO:0005783: endoplasmic reticulum	2.72E-02
18	GO:0043231: intracellular membrane-bounded organelle	3.56E-02
19	GO:0005887: integral component of plasma membrane	4.13E-02