Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0097164: ammonium ion metabolic process0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0010394: homogalacturonan metabolic process0.00E+00
9GO:0006633: fatty acid biosynthetic process7.46E-08
10GO:0015976: carbon utilization3.22E-07
11GO:0010411: xyloglucan metabolic process2.98E-06
12GO:0045489: pectin biosynthetic process1.31E-05
13GO:0071555: cell wall organization1.32E-05
14GO:0042546: cell wall biogenesis1.51E-05
15GO:0010037: response to carbon dioxide4.90E-05
16GO:0006085: acetyl-CoA biosynthetic process4.90E-05
17GO:2000122: negative regulation of stomatal complex development4.90E-05
18GO:0006833: water transport7.44E-05
19GO:0042254: ribosome biogenesis7.57E-05
20GO:0000413: protein peptidyl-prolyl isomerization2.15E-04
21GO:0042547: cell wall modification involved in multidimensional cell growth2.70E-04
22GO:0042371: vitamin K biosynthetic process2.70E-04
23GO:0045488: pectin metabolic process2.70E-04
24GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.70E-04
25GO:0060627: regulation of vesicle-mediated transport2.70E-04
26GO:0046520: sphingoid biosynthetic process2.70E-04
27GO:0010442: guard cell morphogenesis2.70E-04
28GO:0071370: cellular response to gibberellin stimulus2.70E-04
29GO:0032544: plastid translation3.19E-04
30GO:0010583: response to cyclopentenone3.47E-04
31GO:0048829: root cap development5.32E-04
32GO:0071258: cellular response to gravity5.94E-04
33GO:0006529: asparagine biosynthetic process5.94E-04
34GO:2000123: positive regulation of stomatal complex development5.94E-04
35GO:0052541: plant-type cell wall cellulose metabolic process5.94E-04
36GO:0006695: cholesterol biosynthetic process5.94E-04
37GO:0070981: L-asparagine biosynthetic process5.94E-04
38GO:0006423: cysteinyl-tRNA aminoacylation5.94E-04
39GO:0060919: auxin influx5.94E-04
40GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.10E-04
41GO:0009735: response to cytokinin7.94E-04
42GO:0045793: positive regulation of cell size9.62E-04
43GO:2001295: malonyl-CoA biosynthetic process9.62E-04
44GO:0006065: UDP-glucuronate biosynthetic process9.62E-04
45GO:0015840: urea transport9.62E-04
46GO:0016051: carbohydrate biosynthetic process9.69E-04
47GO:0006412: translation1.02E-03
48GO:0010025: wax biosynthetic process1.11E-03
49GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.38E-03
50GO:0006241: CTP biosynthetic process1.38E-03
51GO:0043481: anthocyanin accumulation in tissues in response to UV light1.38E-03
52GO:0009650: UV protection1.38E-03
53GO:0006165: nucleoside diphosphate phosphorylation1.38E-03
54GO:0006228: UTP biosynthetic process1.38E-03
55GO:0046739: transport of virus in multicellular host1.38E-03
56GO:0003333: amino acid transmembrane transport1.48E-03
57GO:0009411: response to UV1.76E-03
58GO:0042538: hyperosmotic salinity response1.77E-03
59GO:0006183: GTP biosynthetic process1.84E-03
60GO:2000038: regulation of stomatal complex development1.84E-03
61GO:0044206: UMP salvage1.84E-03
62GO:0009826: unidimensional cell growth2.11E-03
63GO:0009409: response to cold2.20E-03
64GO:0000271: polysaccharide biosynthetic process2.24E-03
65GO:0034220: ion transmembrane transport2.24E-03
66GO:0042335: cuticle development2.24E-03
67GO:0010375: stomatal complex patterning2.35E-03
68GO:0048359: mucilage metabolic process involved in seed coat development2.35E-03
69GO:0043097: pyrimidine nucleoside salvage2.35E-03
70GO:0042549: photosystem II stabilization2.90E-03
71GO:0006555: methionine metabolic process2.90E-03
72GO:0006206: pyrimidine nucleobase metabolic process2.90E-03
73GO:0071554: cell wall organization or biogenesis2.98E-03
74GO:0009854: oxidative photosynthetic carbon pathway3.49E-03
75GO:0010555: response to mannitol3.49E-03
76GO:0009955: adaxial/abaxial pattern specification3.49E-03
77GO:0042372: phylloquinone biosynthetic process3.49E-03
78GO:0009612: response to mechanical stimulus3.49E-03
79GO:1901259: chloroplast rRNA processing3.49E-03
80GO:0006694: steroid biosynthetic process3.49E-03
81GO:0042742: defense response to bacterium3.81E-03
82GO:0007267: cell-cell signaling3.83E-03
83GO:0009610: response to symbiotic fungus4.12E-03
84GO:0045995: regulation of embryonic development4.12E-03
85GO:0030497: fatty acid elongation4.12E-03
86GO:0009645: response to low light intensity stimulus4.12E-03
87GO:0007155: cell adhesion4.77E-03
88GO:0009642: response to light intensity4.77E-03
89GO:0006526: arginine biosynthetic process5.47E-03
90GO:0009808: lignin metabolic process5.47E-03
91GO:0010497: plasmodesmata-mediated intercellular transport5.47E-03
92GO:0006629: lipid metabolic process5.61E-03
93GO:0045490: pectin catabolic process6.08E-03
94GO:0015780: nucleotide-sugar transport6.20E-03
95GO:0045337: farnesyl diphosphate biosynthetic process6.20E-03
96GO:0010206: photosystem II repair6.20E-03
97GO:0033384: geranyl diphosphate biosynthetic process6.20E-03
98GO:0007568: aging6.49E-03
99GO:0010119: regulation of stomatal movement6.49E-03
100GO:0006865: amino acid transport6.79E-03
101GO:0043067: regulation of programmed cell death6.96E-03
102GO:0035999: tetrahydrofolate interconversion6.96E-03
103GO:0043069: negative regulation of programmed cell death7.75E-03
104GO:0006949: syncytium formation7.75E-03
105GO:0009870: defense response signaling pathway, resistance gene-dependent7.75E-03
106GO:0006631: fatty acid metabolic process8.46E-03
107GO:0000038: very long-chain fatty acid metabolic process8.58E-03
108GO:0009773: photosynthetic electron transport in photosystem I8.58E-03
109GO:0019684: photosynthesis, light reaction8.58E-03
110GO:0009089: lysine biosynthetic process via diaminopimelate8.58E-03
111GO:0009734: auxin-activated signaling pathway9.44E-03
112GO:0006790: sulfur compound metabolic process9.44E-03
113GO:0008643: carbohydrate transport9.94E-03
114GO:0006006: glucose metabolic process1.03E-02
115GO:0050826: response to freezing1.03E-02
116GO:0006541: glutamine metabolic process1.12E-02
117GO:0010207: photosystem II assembly1.12E-02
118GO:0019253: reductive pentose-phosphate cycle1.12E-02
119GO:0055114: oxidation-reduction process1.13E-02
120GO:0046854: phosphatidylinositol phosphorylation1.22E-02
121GO:0005985: sucrose metabolic process1.22E-02
122GO:0006071: glycerol metabolic process1.32E-02
123GO:0006636: unsaturated fatty acid biosynthetic process1.32E-02
124GO:0005992: trehalose biosynthetic process1.42E-02
125GO:0019344: cysteine biosynthetic process1.42E-02
126GO:0009116: nucleoside metabolic process1.42E-02
127GO:0000027: ribosomal large subunit assembly1.42E-02
128GO:0010026: trichome differentiation1.52E-02
129GO:0007017: microtubule-based process1.52E-02
130GO:0009814: defense response, incompatible interaction1.73E-02
131GO:0006730: one-carbon metabolic process1.73E-02
132GO:0040007: growth1.84E-02
133GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.84E-02
134GO:0055085: transmembrane transport1.92E-02
135GO:0006284: base-excision repair1.95E-02
136GO:0019722: calcium-mediated signaling1.95E-02
137GO:0016117: carotenoid biosynthetic process2.07E-02
138GO:0080022: primary root development2.19E-02
139GO:0010197: polar nucleus fusion2.31E-02
140GO:0009741: response to brassinosteroid2.31E-02
141GO:0006520: cellular amino acid metabolic process2.31E-02
142GO:0006810: transport2.39E-02
143GO:0007018: microtubule-based movement2.43E-02
144GO:0009646: response to absence of light2.43E-02
145GO:0019252: starch biosynthetic process2.55E-02
146GO:0016132: brassinosteroid biosynthetic process2.68E-02
147GO:0002229: defense response to oomycetes2.68E-02
148GO:0032502: developmental process2.81E-02
149GO:1901657: glycosyl compound metabolic process2.94E-02
150GO:0009828: plant-type cell wall loosening3.07E-02
151GO:0016126: sterol biosynthetic process3.48E-02
152GO:0009911: positive regulation of flower development3.48E-02
153GO:0009627: systemic acquired resistance3.77E-02
154GO:0015995: chlorophyll biosynthetic process3.91E-02
155GO:0016311: dephosphorylation4.06E-02
156GO:0009817: defense response to fungus, incompatible interaction4.21E-02
157GO:0009813: flavonoid biosynthetic process4.36E-02
158GO:0010311: lateral root formation4.36E-02
159GO:0009733: response to auxin4.49E-02
160GO:0009834: plant-type secondary cell wall biogenesis4.51E-02
161GO:0009416: response to light stimulus4.64E-02
162GO:0009853: photorespiration4.97E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0016762: xyloglucan:xyloglucosyl transferase activity6.99E-07
9GO:0016798: hydrolase activity, acting on glycosyl bonds2.98E-06
10GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.21E-05
11GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.64E-05
12GO:0003878: ATP citrate synthase activity2.72E-05
13GO:0003735: structural constituent of ribosome3.90E-05
14GO:0004089: carbonate dehydratase activity4.30E-05
15GO:0010328: auxin influx transmembrane transporter activity4.90E-05
16GO:0009922: fatty acid elongase activity7.79E-05
17GO:0019843: rRNA binding1.03E-04
18GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.34E-04
19GO:0030570: pectate lyase activity1.52E-04
20GO:0051920: peroxiredoxin activity1.56E-04
21GO:0016209: antioxidant activity2.58E-04
22GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.70E-04
23GO:0000170: sphingosine hydroxylase activity2.70E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.70E-04
25GO:0080132: fatty acid alpha-hydroxylase activity2.70E-04
26GO:0004071: aspartate-ammonia ligase activity2.70E-04
27GO:0015200: methylammonium transmembrane transporter activity2.70E-04
28GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.70E-04
29GO:0015250: water channel activity5.15E-04
30GO:0042389: omega-3 fatty acid desaturase activity5.94E-04
31GO:0004817: cysteine-tRNA ligase activity5.94E-04
32GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.94E-04
33GO:0042284: sphingolipid delta-4 desaturase activity5.94E-04
34GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.94E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.94E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.94E-04
37GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity5.94E-04
38GO:0003979: UDP-glucose 6-dehydrogenase activity9.62E-04
39GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.62E-04
40GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.62E-04
41GO:0005504: fatty acid binding9.62E-04
42GO:0004148: dihydrolipoyl dehydrogenase activity9.62E-04
43GO:0004075: biotin carboxylase activity9.62E-04
44GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.11E-03
45GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.11E-03
46GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.11E-03
47GO:0004550: nucleoside diphosphate kinase activity1.38E-03
48GO:0008097: 5S rRNA binding1.38E-03
49GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.38E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.61E-03
51GO:0051287: NAD binding1.69E-03
52GO:0015204: urea transmembrane transporter activity1.84E-03
53GO:0004845: uracil phosphoribosyltransferase activity1.84E-03
54GO:0016836: hydro-lyase activity1.84E-03
55GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.84E-03
56GO:0052793: pectin acetylesterase activity1.84E-03
57GO:0045430: chalcone isomerase activity1.84E-03
58GO:0008514: organic anion transmembrane transporter activity1.92E-03
59GO:0003989: acetyl-CoA carboxylase activity2.35E-03
60GO:0008725: DNA-3-methyladenine glycosylase activity2.35E-03
61GO:0008519: ammonium transmembrane transporter activity2.90E-03
62GO:0016208: AMP binding2.90E-03
63GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.49E-03
64GO:0004849: uridine kinase activity3.49E-03
65GO:0005200: structural constituent of cytoskeleton3.83E-03
66GO:0016413: O-acetyltransferase activity4.06E-03
67GO:0016829: lyase activity4.46E-03
68GO:0004564: beta-fructofuranosidase activity4.77E-03
69GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.47E-03
70GO:0004337: geranyltranstransferase activity6.20E-03
71GO:0008889: glycerophosphodiester phosphodiesterase activity6.20E-03
72GO:0005507: copper ion binding6.72E-03
73GO:0047617: acyl-CoA hydrolase activity6.96E-03
74GO:0004575: sucrose alpha-glucosidase activity6.96E-03
75GO:0003993: acid phosphatase activity7.44E-03
76GO:0004805: trehalose-phosphatase activity7.75E-03
77GO:0004161: dimethylallyltranstransferase activity8.58E-03
78GO:0015293: symporter activity1.03E-02
79GO:0003777: microtubule motor activity1.37E-02
80GO:0015171: amino acid transmembrane transporter activity1.37E-02
81GO:0052689: carboxylic ester hydrolase activity1.58E-02
82GO:0019706: protein-cysteine S-palmitoyltransferase activity1.62E-02
83GO:0004650: polygalacturonase activity1.62E-02
84GO:0003727: single-stranded RNA binding1.95E-02
85GO:0016758: transferase activity, transferring hexosyl groups2.16E-02
86GO:0008080: N-acetyltransferase activity2.31E-02
87GO:0004672: protein kinase activity2.39E-02
88GO:0009055: electron carrier activity2.49E-02
89GO:0019901: protein kinase binding2.55E-02
90GO:0008017: microtubule binding3.20E-02
91GO:0016722: oxidoreductase activity, oxidizing metal ions3.21E-02
92GO:0102483: scopolin beta-glucosidase activity3.91E-02
93GO:0008236: serine-type peptidase activity4.06E-02
94GO:0003824: catalytic activity4.35E-02
95GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.66E-02
96GO:0004601: peroxidase activity4.72E-02
97GO:0016788: hydrolase activity, acting on ester bonds4.80E-02
98GO:0003746: translation elongation factor activity4.97E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009570: chloroplast stroma6.95E-17
4GO:0009941: chloroplast envelope1.23E-15
5GO:0048046: apoplast6.50E-12
6GO:0009507: chloroplast1.50E-11
7GO:0009579: thylakoid8.18E-11
8GO:0031977: thylakoid lumen1.83E-08
9GO:0031225: anchored component of membrane5.58E-08
10GO:0046658: anchored component of plasma membrane3.31E-07
11GO:0009505: plant-type cell wall7.46E-07
12GO:0005618: cell wall8.63E-06
13GO:0009543: chloroplast thylakoid lumen9.41E-06
14GO:0009535: chloroplast thylakoid membrane1.31E-05
15GO:0009346: citrate lyase complex2.72E-05
16GO:0005840: ribosome8.61E-05
17GO:0016020: membrane2.17E-04
18GO:0009506: plasmodesma2.39E-04
19GO:0005576: extracellular region3.36E-04
20GO:0045298: tubulin complex3.84E-04
21GO:0010319: stromule4.43E-04
22GO:0042170: plastid membrane5.94E-04
23GO:0005886: plasma membrane6.25E-04
24GO:0009534: chloroplast thylakoid1.37E-03
25GO:0005775: vacuolar lumen1.38E-03
26GO:0000139: Golgi membrane2.20E-03
27GO:0005773: vacuole2.78E-03
28GO:0005874: microtubule2.94E-03
29GO:0042807: central vacuole4.12E-03
30GO:0000326: protein storage vacuole5.47E-03
31GO:0005763: mitochondrial small ribosomal subunit6.20E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.20E-03
33GO:0000311: plastid large ribosomal subunit9.44E-03
34GO:0005578: proteinaceous extracellular matrix1.03E-02
35GO:0030659: cytoplasmic vesicle membrane1.12E-02
36GO:0030095: chloroplast photosystem II1.12E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.22E-02
38GO:0022626: cytosolic ribosome1.25E-02
39GO:0005875: microtubule associated complex1.32E-02
40GO:0009654: photosystem II oxygen evolving complex1.52E-02
41GO:0015935: small ribosomal subunit1.62E-02
42GO:0005774: vacuolar membrane1.66E-02
43GO:0005794: Golgi apparatus1.68E-02
44GO:0005871: kinesin complex2.07E-02
45GO:0019898: extrinsic component of membrane2.55E-02
46GO:0005802: trans-Golgi network2.70E-02
47GO:0005778: peroxisomal membrane3.21E-02
48GO:0005768: endosome3.26E-02
49GO:0005887: integral component of plasma membrane3.34E-02
50GO:0015934: large ribosomal subunit4.66E-02
51GO:0000325: plant-type vacuole4.66E-02
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Gene type



Gene DE type