GO Enrichment Analysis of Co-expressed Genes with
AT4G12060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0006412: translation | 1.66E-09 |
| 7 | GO:0042254: ribosome biogenesis | 2.24E-07 |
| 8 | GO:0032544: plastid translation | 2.51E-07 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.26E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 6.26E-05 |
| 11 | GO:1902458: positive regulation of stomatal opening | 6.26E-05 |
| 12 | GO:0009735: response to cytokinin | 7.04E-05 |
| 13 | GO:0080183: response to photooxidative stress | 1.52E-04 |
| 14 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.52E-04 |
| 15 | GO:0043039: tRNA aminoacylation | 1.52E-04 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.52E-04 |
| 17 | GO:0006418: tRNA aminoacylation for protein translation | 1.88E-04 |
| 18 | GO:0071492: cellular response to UV-A | 2.57E-04 |
| 19 | GO:0006424: glutamyl-tRNA aminoacylation | 3.73E-04 |
| 20 | GO:0055070: copper ion homeostasis | 3.73E-04 |
| 21 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 3.73E-04 |
| 22 | GO:0006546: glycine catabolic process | 4.99E-04 |
| 23 | GO:0071486: cellular response to high light intensity | 4.99E-04 |
| 24 | GO:0009765: photosynthesis, light harvesting | 4.99E-04 |
| 25 | GO:0044206: UMP salvage | 4.99E-04 |
| 26 | GO:0032543: mitochondrial translation | 6.32E-04 |
| 27 | GO:0010236: plastoquinone biosynthetic process | 6.32E-04 |
| 28 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.32E-04 |
| 29 | GO:0031365: N-terminal protein amino acid modification | 6.32E-04 |
| 30 | GO:0016123: xanthophyll biosynthetic process | 6.32E-04 |
| 31 | GO:0016120: carotene biosynthetic process | 6.32E-04 |
| 32 | GO:0043097: pyrimidine nucleoside salvage | 6.32E-04 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 7.73E-04 |
| 34 | GO:0016554: cytidine to uridine editing | 7.73E-04 |
| 35 | GO:0006206: pyrimidine nucleobase metabolic process | 7.73E-04 |
| 36 | GO:0017148: negative regulation of translation | 9.20E-04 |
| 37 | GO:0010189: vitamin E biosynthetic process | 9.20E-04 |
| 38 | GO:0010555: response to mannitol | 9.20E-04 |
| 39 | GO:0009955: adaxial/abaxial pattern specification | 9.20E-04 |
| 40 | GO:1901259: chloroplast rRNA processing | 9.20E-04 |
| 41 | GO:2000070: regulation of response to water deprivation | 1.24E-03 |
| 42 | GO:0045010: actin nucleation | 1.24E-03 |
| 43 | GO:0048564: photosystem I assembly | 1.24E-03 |
| 44 | GO:0009642: response to light intensity | 1.24E-03 |
| 45 | GO:0015979: photosynthesis | 1.28E-03 |
| 46 | GO:0015996: chlorophyll catabolic process | 1.41E-03 |
| 47 | GO:0007186: G-protein coupled receptor signaling pathway | 1.41E-03 |
| 48 | GO:1900865: chloroplast RNA modification | 1.77E-03 |
| 49 | GO:0045037: protein import into chloroplast stroma | 2.37E-03 |
| 50 | GO:0030036: actin cytoskeleton organization | 2.58E-03 |
| 51 | GO:0010207: photosystem II assembly | 2.80E-03 |
| 52 | GO:0046688: response to copper ion | 3.03E-03 |
| 53 | GO:0019344: cysteine biosynthetic process | 3.49E-03 |
| 54 | GO:0009116: nucleoside metabolic process | 3.49E-03 |
| 55 | GO:0006413: translational initiation | 3.79E-03 |
| 56 | GO:0061077: chaperone-mediated protein folding | 3.98E-03 |
| 57 | GO:0009411: response to UV | 4.50E-03 |
| 58 | GO:0055085: transmembrane transport | 4.91E-03 |
| 59 | GO:0016117: carotenoid biosynthetic process | 5.03E-03 |
| 60 | GO:0000413: protein peptidyl-prolyl isomerization | 5.31E-03 |
| 61 | GO:0010182: sugar mediated signaling pathway | 5.59E-03 |
| 62 | GO:0009658: chloroplast organization | 6.27E-03 |
| 63 | GO:0009793: embryo development ending in seed dormancy | 6.41E-03 |
| 64 | GO:0032502: developmental process | 6.76E-03 |
| 65 | GO:0007264: small GTPase mediated signal transduction | 6.76E-03 |
| 66 | GO:1901657: glycosyl compound metabolic process | 7.07E-03 |
| 67 | GO:0010090: trichome morphogenesis | 7.07E-03 |
| 68 | GO:0010286: heat acclimation | 7.70E-03 |
| 69 | GO:0010027: thylakoid membrane organization | 8.35E-03 |
| 70 | GO:0042742: defense response to bacterium | 8.89E-03 |
| 71 | GO:0015995: chlorophyll biosynthetic process | 9.36E-03 |
| 72 | GO:0048481: plant ovule development | 1.01E-02 |
| 73 | GO:0018298: protein-chromophore linkage | 1.01E-02 |
| 74 | GO:0009817: defense response to fungus, incompatible interaction | 1.01E-02 |
| 75 | GO:0006839: mitochondrial transport | 1.30E-02 |
| 76 | GO:0051707: response to other organism | 1.42E-02 |
| 77 | GO:0009644: response to high light intensity | 1.50E-02 |
| 78 | GO:0046686: response to cadmium ion | 1.56E-02 |
| 79 | GO:0042538: hyperosmotic salinity response | 1.67E-02 |
| 80 | GO:0006096: glycolytic process | 1.98E-02 |
| 81 | GO:0009737: response to abscisic acid | 2.31E-02 |
| 82 | GO:0006457: protein folding | 2.65E-02 |
| 83 | GO:0006633: fatty acid biosynthetic process | 3.11E-02 |
| 84 | GO:0016036: cellular response to phosphate starvation | 3.17E-02 |
| 85 | GO:0045490: pectin catabolic process | 3.33E-02 |
| 86 | GO:0006979: response to oxidative stress | 4.16E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 7.09E-12 |
| 8 | GO:0003735: structural constituent of ribosome | 9.35E-11 |
| 9 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 6.26E-05 |
| 10 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 6.26E-05 |
| 11 | GO:0004560: alpha-L-fucosidase activity | 6.26E-05 |
| 12 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 6.26E-05 |
| 13 | GO:0004831: tyrosine-tRNA ligase activity | 6.26E-05 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.18E-04 |
| 15 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.52E-04 |
| 16 | GO:0004047: aminomethyltransferase activity | 1.52E-04 |
| 17 | GO:0022891: substrate-specific transmembrane transporter activity | 2.51E-04 |
| 18 | GO:0002161: aminoacyl-tRNA editing activity | 2.57E-04 |
| 19 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.57E-04 |
| 20 | GO:0004812: aminoacyl-tRNA ligase activity | 2.97E-04 |
| 21 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 3.73E-04 |
| 22 | GO:0004659: prenyltransferase activity | 4.99E-04 |
| 23 | GO:0004845: uracil phosphoribosyltransferase activity | 4.99E-04 |
| 24 | GO:0043495: protein anchor | 4.99E-04 |
| 25 | GO:0016168: chlorophyll binding | 6.45E-04 |
| 26 | GO:0004849: uridine kinase activity | 9.20E-04 |
| 27 | GO:0051920: peroxiredoxin activity | 9.20E-04 |
| 28 | GO:0019899: enzyme binding | 1.07E-03 |
| 29 | GO:0008235: metalloexopeptidase activity | 1.07E-03 |
| 30 | GO:0016209: antioxidant activity | 1.24E-03 |
| 31 | GO:0004177: aminopeptidase activity | 2.17E-03 |
| 32 | GO:0000049: tRNA binding | 2.37E-03 |
| 33 | GO:0031072: heat shock protein binding | 2.58E-03 |
| 34 | GO:0005528: FK506 binding | 3.49E-03 |
| 35 | GO:0030570: pectate lyase activity | 4.50E-03 |
| 36 | GO:0003743: translation initiation factor activity | 4.74E-03 |
| 37 | GO:0008483: transaminase activity | 7.70E-03 |
| 38 | GO:0102483: scopolin beta-glucosidase activity | 9.36E-03 |
| 39 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 9.70E-03 |
| 40 | GO:0003746: translation elongation factor activity | 1.19E-02 |
| 41 | GO:0008422: beta-glucosidase activity | 1.26E-02 |
| 42 | GO:0003723: RNA binding | 1.27E-02 |
| 43 | GO:0051082: unfolded protein binding | 2.25E-02 |
| 44 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.70E-02 |
| 45 | GO:0005525: GTP binding | 3.36E-02 |
| 46 | GO:0042802: identical protein binding | 3.95E-02 |
| 47 | GO:0008168: methyltransferase activity | 4.42E-02 |
| 48 | GO:0004601: peroxidase activity | 4.54E-02 |
| 49 | GO:0016788: hydrolase activity, acting on ester bonds | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.23E-36 |
| 2 | GO:0009941: chloroplast envelope | 7.81E-23 |
| 3 | GO:0009570: chloroplast stroma | 1.10E-22 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.55E-17 |
| 5 | GO:0009579: thylakoid | 2.24E-15 |
| 6 | GO:0005840: ribosome | 2.31E-12 |
| 7 | GO:0009534: chloroplast thylakoid | 1.93E-09 |
| 8 | GO:0031977: thylakoid lumen | 5.51E-08 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 7.50E-07 |
| 10 | GO:0000311: plastid large ribosomal subunit | 1.14E-06 |
| 11 | GO:0015934: large ribosomal subunit | 5.58E-05 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 6.26E-05 |
| 13 | GO:0009528: plastid inner membrane | 2.57E-04 |
| 14 | GO:0009523: photosystem II | 3.99E-04 |
| 15 | GO:0009527: plastid outer membrane | 4.99E-04 |
| 16 | GO:0010319: stromule | 5.47E-04 |
| 17 | GO:0022626: cytosolic ribosome | 5.83E-04 |
| 18 | GO:0055035: plastid thylakoid membrane | 6.32E-04 |
| 19 | GO:0031209: SCAR complex | 7.73E-04 |
| 20 | GO:0009539: photosystem II reaction center | 1.41E-03 |
| 21 | GO:0005763: mitochondrial small ribosomal subunit | 1.58E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 2.37E-03 |
| 23 | GO:0009536: plastid | 2.45E-03 |
| 24 | GO:0048046: apoplast | 3.36E-03 |
| 25 | GO:0042651: thylakoid membrane | 3.74E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 3.74E-03 |
| 27 | GO:0015935: small ribosomal subunit | 3.98E-03 |
| 28 | GO:0009532: plastid stroma | 3.98E-03 |
| 29 | GO:0005778: peroxisomal membrane | 7.70E-03 |
| 30 | GO:0031969: chloroplast membrane | 7.77E-03 |
| 31 | GO:0009707: chloroplast outer membrane | 1.01E-02 |
| 32 | GO:0010287: plastoglobule | 2.55E-02 |
| 33 | GO:0005759: mitochondrial matrix | 3.11E-02 |