GO Enrichment Analysis of Co-expressed Genes with
AT4G09650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042493: response to drug | 0.00E+00 |
| 2 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 8 | GO:0006412: translation | 1.26E-18 |
| 9 | GO:0032544: plastid translation | 2.88E-12 |
| 10 | GO:0042254: ribosome biogenesis | 3.58E-12 |
| 11 | GO:0090391: granum assembly | 1.96E-08 |
| 12 | GO:0015979: photosynthesis | 1.27E-07 |
| 13 | GO:0010207: photosystem II assembly | 1.10E-06 |
| 14 | GO:0010027: thylakoid membrane organization | 1.56E-06 |
| 15 | GO:0015995: chlorophyll biosynthetic process | 2.42E-06 |
| 16 | GO:0009735: response to cytokinin | 2.88E-06 |
| 17 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.07E-05 |
| 18 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.04E-04 |
| 19 | GO:0017148: negative regulation of translation | 1.43E-04 |
| 20 | GO:0010196: nonphotochemical quenching | 1.88E-04 |
| 21 | GO:0000413: protein peptidyl-prolyl isomerization | 1.93E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.55E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 2.55E-04 |
| 24 | GO:0042759: long-chain fatty acid biosynthetic process | 2.55E-04 |
| 25 | GO:0042371: vitamin K biosynthetic process | 2.55E-04 |
| 26 | GO:0043686: co-translational protein modification | 2.55E-04 |
| 27 | GO:1902458: positive regulation of stomatal opening | 2.55E-04 |
| 28 | GO:0034337: RNA folding | 2.55E-04 |
| 29 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.55E-04 |
| 30 | GO:0043489: RNA stabilization | 2.55E-04 |
| 31 | GO:0010206: photosystem II repair | 3.55E-04 |
| 32 | GO:0010541: acropetal auxin transport | 5.64E-04 |
| 33 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.64E-04 |
| 34 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.64E-04 |
| 35 | GO:0006568: tryptophan metabolic process | 5.64E-04 |
| 36 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.64E-04 |
| 37 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.64E-04 |
| 38 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.68E-04 |
| 39 | GO:0010160: formation of animal organ boundary | 9.15E-04 |
| 40 | GO:0006518: peptide metabolic process | 9.15E-04 |
| 41 | GO:0010025: wax biosynthetic process | 1.03E-03 |
| 42 | GO:0006986: response to unfolded protein | 1.31E-03 |
| 43 | GO:0055070: copper ion homeostasis | 1.31E-03 |
| 44 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.31E-03 |
| 45 | GO:0071484: cellular response to light intensity | 1.31E-03 |
| 46 | GO:0009102: biotin biosynthetic process | 1.31E-03 |
| 47 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.31E-03 |
| 48 | GO:0051639: actin filament network formation | 1.31E-03 |
| 49 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.31E-03 |
| 50 | GO:0009650: UV protection | 1.31E-03 |
| 51 | GO:1901332: negative regulation of lateral root development | 1.31E-03 |
| 52 | GO:0006457: protein folding | 1.34E-03 |
| 53 | GO:0009411: response to UV | 1.63E-03 |
| 54 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.63E-03 |
| 55 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.75E-03 |
| 56 | GO:0051764: actin crosslink formation | 1.75E-03 |
| 57 | GO:0022622: root system development | 1.75E-03 |
| 58 | GO:0009306: protein secretion | 1.77E-03 |
| 59 | GO:0048443: stamen development | 1.77E-03 |
| 60 | GO:0009658: chloroplast organization | 1.98E-03 |
| 61 | GO:0042335: cuticle development | 2.07E-03 |
| 62 | GO:0010236: plastoquinone biosynthetic process | 2.23E-03 |
| 63 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.23E-03 |
| 64 | GO:0031365: N-terminal protein amino acid modification | 2.23E-03 |
| 65 | GO:0006665: sphingolipid metabolic process | 2.23E-03 |
| 66 | GO:0016120: carotene biosynthetic process | 2.23E-03 |
| 67 | GO:0009958: positive gravitropism | 2.24E-03 |
| 68 | GO:0042549: photosystem II stabilization | 2.75E-03 |
| 69 | GO:0060918: auxin transport | 2.75E-03 |
| 70 | GO:0010019: chloroplast-nucleus signaling pathway | 3.30E-03 |
| 71 | GO:0042372: phylloquinone biosynthetic process | 3.30E-03 |
| 72 | GO:1901259: chloroplast rRNA processing | 3.30E-03 |
| 73 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.30E-03 |
| 74 | GO:0009828: plant-type cell wall loosening | 3.33E-03 |
| 75 | GO:0045454: cell redox homeostasis | 3.61E-03 |
| 76 | GO:0032880: regulation of protein localization | 3.89E-03 |
| 77 | GO:0009772: photosynthetic electron transport in photosystem II | 3.89E-03 |
| 78 | GO:1900057: positive regulation of leaf senescence | 3.89E-03 |
| 79 | GO:0006605: protein targeting | 4.52E-03 |
| 80 | GO:2000070: regulation of response to water deprivation | 4.52E-03 |
| 81 | GO:0048564: photosystem I assembly | 4.52E-03 |
| 82 | GO:0008610: lipid biosynthetic process | 4.52E-03 |
| 83 | GO:0015996: chlorophyll catabolic process | 5.18E-03 |
| 84 | GO:0009817: defense response to fungus, incompatible interaction | 5.18E-03 |
| 85 | GO:0007186: G-protein coupled receptor signaling pathway | 5.18E-03 |
| 86 | GO:0048589: developmental growth | 5.86E-03 |
| 87 | GO:0009631: cold acclimation | 5.99E-03 |
| 88 | GO:0048527: lateral root development | 5.99E-03 |
| 89 | GO:0010205: photoinhibition | 6.58E-03 |
| 90 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.58E-03 |
| 91 | GO:0042761: very long-chain fatty acid biosynthetic process | 6.58E-03 |
| 92 | GO:0034599: cellular response to oxidative stress | 6.86E-03 |
| 93 | GO:0006949: syncytium formation | 7.33E-03 |
| 94 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.33E-03 |
| 95 | GO:0006535: cysteine biosynthetic process from serine | 7.33E-03 |
| 96 | GO:0030001: metal ion transport | 7.48E-03 |
| 97 | GO:0009773: photosynthetic electron transport in photosystem I | 8.11E-03 |
| 98 | GO:0043085: positive regulation of catalytic activity | 8.11E-03 |
| 99 | GO:0008361: regulation of cell size | 8.92E-03 |
| 100 | GO:0045037: protein import into chloroplast stroma | 8.92E-03 |
| 101 | GO:0010152: pollen maturation | 8.92E-03 |
| 102 | GO:0006006: glucose metabolic process | 9.75E-03 |
| 103 | GO:2000012: regulation of auxin polar transport | 9.75E-03 |
| 104 | GO:0009664: plant-type cell wall organization | 1.06E-02 |
| 105 | GO:0010540: basipetal auxin transport | 1.06E-02 |
| 106 | GO:0010143: cutin biosynthetic process | 1.06E-02 |
| 107 | GO:0019253: reductive pentose-phosphate cycle | 1.06E-02 |
| 108 | GO:0046688: response to copper ion | 1.15E-02 |
| 109 | GO:0051017: actin filament bundle assembly | 1.34E-02 |
| 110 | GO:0019344: cysteine biosynthetic process | 1.34E-02 |
| 111 | GO:0000027: ribosomal large subunit assembly | 1.34E-02 |
| 112 | GO:0030245: cellulose catabolic process | 1.64E-02 |
| 113 | GO:0006869: lipid transport | 1.78E-02 |
| 114 | GO:0010091: trichome branching | 1.85E-02 |
| 115 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.95E-02 |
| 116 | GO:0008284: positive regulation of cell proliferation | 1.95E-02 |
| 117 | GO:0080022: primary root development | 2.07E-02 |
| 118 | GO:0006662: glycerol ether metabolic process | 2.18E-02 |
| 119 | GO:0010182: sugar mediated signaling pathway | 2.18E-02 |
| 120 | GO:0009790: embryo development | 2.39E-02 |
| 121 | GO:0000302: response to reactive oxygen species | 2.53E-02 |
| 122 | GO:0006633: fatty acid biosynthetic process | 2.57E-02 |
| 123 | GO:0045490: pectin catabolic process | 2.83E-02 |
| 124 | GO:0009567: double fertilization forming a zygote and endosperm | 2.90E-02 |
| 125 | GO:0009639: response to red or far red light | 2.90E-02 |
| 126 | GO:0009734: auxin-activated signaling pathway | 3.17E-02 |
| 127 | GO:0016126: sterol biosynthetic process | 3.29E-02 |
| 128 | GO:0009627: systemic acquired resistance | 3.56E-02 |
| 129 | GO:0016311: dephosphorylation | 3.83E-02 |
| 130 | GO:0018298: protein-chromophore linkage | 3.97E-02 |
| 131 | GO:0009733: response to auxin | 4.00E-02 |
| 132 | GO:0010311: lateral root formation | 4.12E-02 |
| 133 | GO:0009826: unidimensional cell growth | 4.20E-02 |
| 134 | GO:0010218: response to far red light | 4.26E-02 |
| 135 | GO:0007568: aging | 4.41E-02 |
| 136 | GO:0009793: embryo development ending in seed dormancy | 4.43E-02 |
| 137 | GO:0009637: response to blue light | 4.70E-02 |
| 138 | GO:0045087: innate immune response | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 7 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 8 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 9 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 10 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 9.24E-21 |
| 12 | GO:0003735: structural constituent of ribosome | 3.05E-19 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.01E-11 |
| 14 | GO:0005528: FK506 binding | 4.24E-08 |
| 15 | GO:0043023: ribosomal large subunit binding | 2.46E-05 |
| 16 | GO:0016851: magnesium chelatase activity | 2.46E-05 |
| 17 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.04E-04 |
| 18 | GO:0004163: diphosphomevalonate decarboxylase activity | 2.55E-04 |
| 19 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.55E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.55E-04 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.55E-04 |
| 22 | GO:0042586: peptide deformylase activity | 2.55E-04 |
| 23 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.55E-04 |
| 24 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 2.55E-04 |
| 25 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 5.64E-04 |
| 26 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 5.64E-04 |
| 27 | GO:0008266: poly(U) RNA binding | 8.30E-04 |
| 28 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 9.15E-04 |
| 29 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 9.15E-04 |
| 30 | GO:0051087: chaperone binding | 1.25E-03 |
| 31 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 1.31E-03 |
| 32 | GO:0008097: 5S rRNA binding | 1.31E-03 |
| 33 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.75E-03 |
| 34 | GO:0004659: prenyltransferase activity | 1.75E-03 |
| 35 | GO:0010011: auxin binding | 1.75E-03 |
| 36 | GO:0043495: protein anchor | 1.75E-03 |
| 37 | GO:0009922: fatty acid elongase activity | 2.23E-03 |
| 38 | GO:0004040: amidase activity | 2.23E-03 |
| 39 | GO:0016688: L-ascorbate peroxidase activity | 2.75E-03 |
| 40 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.75E-03 |
| 41 | GO:0004130: cytochrome-c peroxidase activity | 2.75E-03 |
| 42 | GO:0004124: cysteine synthase activity | 3.30E-03 |
| 43 | GO:0051920: peroxiredoxin activity | 3.30E-03 |
| 44 | GO:0019899: enzyme binding | 3.89E-03 |
| 45 | GO:0016168: chlorophyll binding | 4.20E-03 |
| 46 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 4.52E-03 |
| 47 | GO:0016209: antioxidant activity | 4.52E-03 |
| 48 | GO:0052747: sinapyl alcohol dehydrogenase activity | 4.52E-03 |
| 49 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 5.86E-03 |
| 50 | GO:0008047: enzyme activator activity | 7.33E-03 |
| 51 | GO:0042802: identical protein binding | 7.45E-03 |
| 52 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 8.92E-03 |
| 53 | GO:0008378: galactosyltransferase activity | 8.92E-03 |
| 54 | GO:0031072: heat shock protein binding | 9.75E-03 |
| 55 | GO:0004565: beta-galactosidase activity | 9.75E-03 |
| 56 | GO:0010329: auxin efflux transmembrane transporter activity | 9.75E-03 |
| 57 | GO:0016788: hydrolase activity, acting on ester bonds | 9.81E-03 |
| 58 | GO:0008083: growth factor activity | 1.06E-02 |
| 59 | GO:0043424: protein histidine kinase binding | 1.43E-02 |
| 60 | GO:0004707: MAP kinase activity | 1.53E-02 |
| 61 | GO:0051082: unfolded protein binding | 1.63E-02 |
| 62 | GO:0016746: transferase activity, transferring acyl groups | 1.68E-02 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 1.74E-02 |
| 64 | GO:0030570: pectate lyase activity | 1.74E-02 |
| 65 | GO:0008810: cellulase activity | 1.74E-02 |
| 66 | GO:0003756: protein disulfide isomerase activity | 1.85E-02 |
| 67 | GO:0047134: protein-disulfide reductase activity | 1.95E-02 |
| 68 | GO:0005507: copper ion binding | 2.02E-02 |
| 69 | GO:0008080: N-acetyltransferase activity | 2.18E-02 |
| 70 | GO:0030170: pyridoxal phosphate binding | 2.27E-02 |
| 71 | GO:0004791: thioredoxin-disulfide reductase activity | 2.29E-02 |
| 72 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.78E-02 |
| 73 | GO:0051015: actin filament binding | 2.78E-02 |
| 74 | GO:0016791: phosphatase activity | 2.90E-02 |
| 75 | GO:0005509: calcium ion binding | 3.01E-02 |
| 76 | GO:0008483: transaminase activity | 3.03E-02 |
| 77 | GO:0008289: lipid binding | 3.12E-02 |
| 78 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.59E-02 |
| 79 | GO:0008236: serine-type peptidase activity | 3.83E-02 |
| 80 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.97E-02 |
| 81 | GO:0004222: metalloendopeptidase activity | 4.26E-02 |
| 82 | GO:0030145: manganese ion binding | 4.41E-02 |
| 83 | GO:0003993: acid phosphatase activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 3 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 4 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 5 | GO:0009507: chloroplast | 1.54E-50 |
| 6 | GO:0009570: chloroplast stroma | 3.67E-50 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.13E-36 |
| 8 | GO:0009579: thylakoid | 3.74E-36 |
| 9 | GO:0009941: chloroplast envelope | 2.50E-33 |
| 10 | GO:0009534: chloroplast thylakoid | 2.23E-28 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 4.95E-26 |
| 12 | GO:0031977: thylakoid lumen | 2.14E-24 |
| 13 | GO:0005840: ribosome | 1.71E-22 |
| 14 | GO:0030095: chloroplast photosystem II | 1.59E-08 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 2.99E-06 |
| 16 | GO:0010007: magnesium chelatase complex | 1.09E-05 |
| 17 | GO:0019898: extrinsic component of membrane | 1.50E-05 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.88E-04 |
| 19 | GO:0009923: fatty acid elongase complex | 2.55E-04 |
| 20 | GO:0009547: plastid ribosome | 2.55E-04 |
| 21 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.55E-04 |
| 22 | GO:0009523: photosystem II | 2.61E-04 |
| 23 | GO:0009295: nucleoid | 4.00E-04 |
| 24 | GO:0030093: chloroplast photosystem I | 5.64E-04 |
| 25 | GO:0031969: chloroplast membrane | 5.80E-04 |
| 26 | GO:0000311: plastid large ribosomal subunit | 6.51E-04 |
| 27 | GO:0009508: plastid chromosome | 7.37E-04 |
| 28 | GO:0015934: large ribosomal subunit | 7.84E-04 |
| 29 | GO:0000312: plastid small ribosomal subunit | 8.30E-04 |
| 30 | GO:0009528: plastid inner membrane | 9.15E-04 |
| 31 | GO:0009509: chromoplast | 9.15E-04 |
| 32 | GO:0033281: TAT protein transport complex | 9.15E-04 |
| 33 | GO:0005618: cell wall | 9.94E-04 |
| 34 | GO:0032432: actin filament bundle | 1.31E-03 |
| 35 | GO:0015935: small ribosomal subunit | 1.37E-03 |
| 36 | GO:0009536: plastid | 1.48E-03 |
| 37 | GO:0009527: plastid outer membrane | 1.75E-03 |
| 38 | GO:0055035: plastid thylakoid membrane | 2.23E-03 |
| 39 | GO:0010319: stromule | 3.54E-03 |
| 40 | GO:0016020: membrane | 4.67E-03 |
| 41 | GO:0042644: chloroplast nucleoid | 5.86E-03 |
| 42 | GO:0008180: COP9 signalosome | 5.86E-03 |
| 43 | GO:0048046: apoplast | 5.91E-03 |
| 44 | GO:0005884: actin filament | 8.11E-03 |
| 45 | GO:0032040: small-subunit processome | 8.92E-03 |
| 46 | GO:0042651: thylakoid membrane | 1.43E-02 |
| 47 | GO:0009532: plastid stroma | 1.53E-02 |
| 48 | GO:0009706: chloroplast inner membrane | 1.63E-02 |
| 49 | GO:0009522: photosystem I | 2.29E-02 |
| 50 | GO:0031225: anchored component of membrane | 2.31E-02 |
| 51 | GO:0005759: mitochondrial matrix | 2.57E-02 |
| 52 | GO:0030529: intracellular ribonucleoprotein complex | 3.29E-02 |
| 53 | GO:0046658: anchored component of plasma membrane | 3.74E-02 |
| 54 | GO:0022627: cytosolic small ribosomal subunit | 3.74E-02 |
| 55 | GO:0019005: SCF ubiquitin ligase complex | 3.97E-02 |
| 56 | GO:0009707: chloroplast outer membrane | 3.97E-02 |
| 57 | GO:0022626: cytosolic ribosome | 3.99E-02 |
| 58 | GO:0009505: plant-type cell wall | 4.68E-02 |