co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006982: response to lipid hydroperoxide	0.00E+00
2	GO:0010335: response to non-ionic osmotic stress	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0090393: sepal giant cell development	0.00E+00
7	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
8	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
9	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-05
11	GO:0042823: pyridoxal phosphate biosynthetic process	1.33E-05
12	GO:0009658: chloroplast organization	1.56E-05
13	GO:0005986: sucrose biosynthetic process	1.69E-05
14	GO:0019464: glycine decarboxylation via glycine cleavage system	2.45E-05
15	GO:0006546: glycine catabolic process	2.45E-05
16	GO:0006021: inositol biosynthetic process	2.45E-05
17	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.89E-05
18	GO:0055114: oxidation-reduction process	9.22E-05
19	GO:0019252: starch biosynthetic process	1.30E-04
20	GO:0048564: photosystem I assembly	1.40E-04
21	GO:0031998: regulation of fatty acid beta-oxidation	1.80E-04
22	GO:0051180: vitamin transport	1.80E-04
23	GO:0030974: thiamine pyrophosphate transport	1.80E-04
24	GO:0051775: response to redox state	1.80E-04
25	GO:0006659: phosphatidylserine biosynthetic process	1.80E-04
26	GO:0080093: regulation of photorespiration	1.80E-04
27	GO:0010206: photosystem II repair	2.13E-04
28	GO:0010205: photoinhibition	2.55E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	3.48E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.05E-04
31	GO:0046741: transport of virus in host, tissue to tissue	4.05E-04
32	GO:0042819: vitamin B6 biosynthetic process	4.05E-04
33	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.05E-04
34	GO:0015893: drug transport	4.05E-04
35	GO:0097054: L-glutamate biosynthetic process	4.05E-04
36	GO:1904143: positive regulation of carotenoid biosynthetic process	4.05E-04
37	GO:0006094: gluconeogenesis	4.55E-04
38	GO:0006108: malate metabolic process	4.55E-04
39	GO:0009853: photorespiration	4.69E-04
40	GO:0019253: reductive pentose-phosphate cycle	5.13E-04
41	GO:0006636: unsaturated fatty acid biosynthetic process	6.38E-04
42	GO:0005977: glycogen metabolic process	6.61E-04
43	GO:0006011: UDP-glucose metabolic process	6.61E-04
44	GO:0000913: preprophase band assembly	6.61E-04
45	GO:0031022: nuclear migration along microfilament	6.61E-04
46	GO:0006000: fructose metabolic process	6.61E-04
47	GO:0009768: photosynthesis, light harvesting in photosystem I	7.77E-04
48	GO:0006020: inositol metabolic process	9.45E-04
49	GO:0071484: cellular response to light intensity	9.45E-04
50	GO:0006107: oxaloacetate metabolic process	9.45E-04
51	GO:0006537: glutamate biosynthetic process	9.45E-04
52	GO:0008615: pyridoxine biosynthetic process	9.45E-04
53	GO:0043572: plastid fission	9.45E-04
54	GO:0032877: positive regulation of DNA endoreduplication	9.45E-04
55	GO:0046836: glycolipid transport	9.45E-04
56	GO:0009735: response to cytokinin	1.11E-03
57	GO:0019676: ammonia assimilation cycle	1.25E-03
58	GO:0051781: positive regulation of cell division	1.25E-03
59	GO:0015994: chlorophyll metabolic process	1.25E-03
60	GO:0006734: NADH metabolic process	1.25E-03
61	GO:0010021: amylopectin biosynthetic process	1.25E-03
62	GO:0080167: response to karrikin	1.28E-03
63	GO:0006520: cellular amino acid metabolic process	1.37E-03
64	GO:0009646: response to absence of light	1.47E-03
65	GO:0015979: photosynthesis	1.56E-03
66	GO:0009791: post-embryonic development	1.57E-03
67	GO:0006097: glyoxylate cycle	1.59E-03
68	GO:0016120: carotene biosynthetic process	1.59E-03
69	GO:0043097: pyrimidine nucleoside salvage	1.59E-03
70	GO:0010117: photoprotection	1.59E-03
71	GO:0009904: chloroplast accumulation movement	1.59E-03
72	GO:0030163: protein catabolic process	1.91E-03
73	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.96E-03
74	GO:0006206: pyrimidine nucleobase metabolic process	1.96E-03
75	GO:0046855: inositol phosphate dephosphorylation	1.96E-03
76	GO:0010942: positive regulation of cell death	1.96E-03
77	GO:0042026: protein refolding	2.35E-03
78	GO:1901259: chloroplast rRNA processing	2.35E-03
79	GO:0006458: 'de novo' protein folding	2.35E-03
80	GO:0009903: chloroplast avoidance movement	2.35E-03
81	GO:0009854: oxidative photosynthetic carbon pathway	2.35E-03
82	GO:0006810: transport	2.55E-03
83	GO:0010196: nonphotochemical quenching	2.77E-03
84	GO:0009645: response to low light intensity stimulus	2.77E-03
85	GO:0018298: protein-chromophore linkage	3.15E-03
86	GO:0052543: callose deposition in cell wall	3.21E-03
87	GO:0008610: lipid biosynthetic process	3.21E-03
88	GO:0005978: glycogen biosynthetic process	3.21E-03
89	GO:0009850: auxin metabolic process	3.21E-03
90	GO:0009704: de-etiolation	3.21E-03
91	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.67E-03
92	GO:0006002: fructose 6-phosphate metabolic process	3.67E-03
93	GO:0071482: cellular response to light stimulus	3.67E-03
94	GO:0006098: pentose-phosphate shunt	4.15E-03
95	GO:0009821: alkaloid biosynthetic process	4.15E-03
96	GO:0034765: regulation of ion transmembrane transport	4.15E-03
97	GO:0000373: Group II intron splicing	4.15E-03
98	GO:0006099: tricarboxylic acid cycle	4.16E-03
99	GO:0042742: defense response to bacterium	4.46E-03
100	GO:0005982: starch metabolic process	4.65E-03
101	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	4.65E-03
102	GO:0009644: response to high light intensity	5.54E-03
103	GO:0018119: peptidyl-cysteine S-nitrosylation	5.72E-03
104	GO:0071365: cellular response to auxin stimulus	6.28E-03
105	GO:0006790: sulfur compound metabolic process	6.28E-03
106	GO:0002213: defense response to insect	6.28E-03
107	GO:0009767: photosynthetic electron transport chain	6.86E-03
108	GO:0010020: chloroplast fission	7.46E-03
109	GO:0010207: photosystem II assembly	7.46E-03
110	GO:0006417: regulation of translation	7.64E-03
111	GO:0042343: indole glucosinolate metabolic process	8.08E-03
112	GO:0046854: phosphatidylinositol phosphorylation	8.08E-03
113	GO:0046686: response to cadmium ion	9.65E-03
114	GO:0051302: regulation of cell division	1.00E-02
115	GO:0007017: microtubule-based process	1.00E-02
116	GO:0009695: jasmonic acid biosynthetic process	1.00E-02
117	GO:0098542: defense response to other organism	1.07E-02
118	GO:0061077: chaperone-mediated protein folding	1.07E-02
119	GO:0016226: iron-sulfur cluster assembly	1.14E-02
120	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.14E-02
121	GO:0006730: one-carbon metabolic process	1.14E-02
122	GO:0030433: ubiquitin-dependent ERAD pathway	1.14E-02
123	GO:0006817: phosphate ion transport	1.29E-02
124	GO:0009058: biosynthetic process	1.30E-02
125	GO:0016117: carotenoid biosynthetic process	1.37E-02
126	GO:0042631: cellular response to water deprivation	1.44E-02
127	GO:0042391: regulation of membrane potential	1.44E-02
128	GO:0009741: response to brassinosteroid	1.52E-02
129	GO:0006814: sodium ion transport	1.60E-02
130	GO:0015986: ATP synthesis coupled proton transport	1.60E-02
131	GO:0007018: microtubule-based movement	1.60E-02
132	GO:0008654: phospholipid biosynthetic process	1.68E-02
133	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.77E-02
134	GO:0000302: response to reactive oxygen species	1.77E-02
135	GO:0032502: developmental process	1.85E-02
136	GO:0016032: viral process	1.85E-02
137	GO:0071805: potassium ion transmembrane transport	2.11E-02
138	GO:0051607: defense response to virus	2.20E-02
139	GO:0000910: cytokinesis	2.20E-02
140	GO:0009416: response to light stimulus	2.25E-02
141	GO:0016126: sterol biosynthetic process	2.30E-02
142	GO:0010027: thylakoid membrane organization	2.30E-02
143	GO:0042128: nitrate assimilation	2.48E-02
144	GO:0009409: response to cold	2.51E-02
145	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
146	GO:0010311: lateral root formation	2.87E-02
147	GO:0007049: cell cycle	2.95E-02
148	GO:0005975: carbohydrate metabolic process	2.97E-02
149	GO:0010218: response to far red light	2.97E-02
150	GO:0006508: proteolysis	3.07E-02
151	GO:0009637: response to blue light	3.28E-02
152	GO:0016051: carbohydrate biosynthetic process	3.28E-02
153	GO:0006839: mitochondrial transport	3.60E-02
154	GO:0006631: fatty acid metabolic process	3.71E-02
155	GO:0009744: response to sucrose	3.93E-02
156	GO:0000209: protein polyubiquitination	4.04E-02
157	GO:0006855: drug transmembrane transport	4.39E-02
158	GO:0032259: methylation	4.61E-02
159	GO:0042538: hyperosmotic salinity response	4.62E-02
160	GO:0010224: response to UV-B	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
6	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
7	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
10	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
11	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
14	GO:0008974: phosphoribulokinase activity	0.00E+00
15	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
16	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
17	GO:0008465: glycerate dehydrogenase activity	0.00E+00
18	GO:0050307: sucrose-phosphate phosphatase activity	5.74E-06
19	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.33E-05
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.45E-05
21	GO:0004222: metalloendopeptidase activity	2.85E-05
22	GO:0016615: malate dehydrogenase activity	5.89E-05
23	GO:0030060: L-malate dehydrogenase activity	8.20E-05
24	GO:0035671: enone reductase activity	1.80E-04
25	GO:0090422: thiamine pyrophosphate transporter activity	1.80E-04
26	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.80E-04
27	GO:0008746: NAD(P)+ transhydrogenase activity	1.80E-04
28	GO:0016041: glutamate synthase (ferredoxin) activity	1.80E-04
29	GO:0004328: formamidase activity	1.80E-04
30	GO:0016168: chlorophyll binding	2.60E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	4.05E-04
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.05E-04
33	GO:0008934: inositol monophosphate 1-phosphatase activity	4.05E-04
34	GO:0052833: inositol monophosphate 4-phosphatase activity	4.05E-04
35	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.05E-04
36	GO:0004512: inositol-3-phosphate synthase activity	4.05E-04
37	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	4.05E-04
38	GO:0008967: phosphoglycolate phosphatase activity	4.05E-04
39	GO:0031409: pigment binding	6.38E-04
40	GO:0043169: cation binding	6.61E-04
41	GO:0032947: protein complex scaffold	6.61E-04
42	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.61E-04
43	GO:0004176: ATP-dependent peptidase activity	8.51E-04
44	GO:0008508: bile acid:sodium symporter activity	9.45E-04
45	GO:0017089: glycolipid transporter activity	9.45E-04
46	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.45E-04
47	GO:0051861: glycolipid binding	1.25E-03
48	GO:0008453: alanine-glyoxylate transaminase activity	1.25E-03
49	GO:0004506: squalene monooxygenase activity	1.25E-03
50	GO:0009011: starch synthase activity	1.25E-03
51	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.59E-03
52	GO:0051538: 3 iron, 4 sulfur cluster binding	1.59E-03
53	GO:0016787: hydrolase activity	1.65E-03
54	GO:0048038: quinone binding	1.68E-03
55	GO:0004332: fructose-bisphosphate aldolase activity	1.96E-03
56	GO:0000210: NAD+ diphosphatase activity	1.96E-03
57	GO:0042578: phosphoric ester hydrolase activity	1.96E-03
58	GO:0008237: metallopeptidase activity	2.16E-03
59	GO:0005242: inward rectifier potassium channel activity	2.35E-03
60	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.35E-03
61	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.35E-03
62	GO:0004849: uridine kinase activity	2.35E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	3.21E-03
64	GO:0043022: ribosome binding	3.21E-03
65	GO:0008135: translation factor activity, RNA binding	3.67E-03
66	GO:0015078: hydrogen ion transmembrane transporter activity	3.67E-03
67	GO:0016844: strictosidine synthase activity	4.65E-03
68	GO:0044183: protein binding involved in protein folding	5.72E-03
69	GO:0004860: protein kinase inhibitor activity	5.72E-03
70	GO:0015293: symporter activity	5.75E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	6.86E-03
72	GO:0004089: carbonate dehydratase activity	6.86E-03
73	GO:0016491: oxidoreductase activity	7.20E-03
74	GO:0008266: poly(U) RNA binding	7.46E-03
75	GO:0008131: primary amine oxidase activity	7.46E-03
76	GO:0003777: microtubule motor activity	7.64E-03
77	GO:0051536: iron-sulfur cluster binding	9.37E-03
78	GO:0043424: protein histidine kinase binding	1.00E-02
79	GO:0022891: substrate-specific transmembrane transporter activity	1.22E-02
80	GO:0005249: voltage-gated potassium channel activity	1.44E-02
81	GO:0030551: cyclic nucleotide binding	1.44E-02
82	GO:0008080: N-acetyltransferase activity	1.52E-02
83	GO:0016887: ATPase activity	1.90E-02
84	GO:0008168: methyltransferase activity	2.54E-02
85	GO:0046982: protein heterodimerization activity	2.59E-02
86	GO:0000287: magnesium ion binding	2.59E-02
87	GO:0016788: hydrolase activity, acting on ester bonds	2.69E-02
88	GO:0015238: drug transmembrane transporter activity	2.87E-02
89	GO:0050660: flavin adenine dinucleotide binding	3.06E-02
90	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.08E-02
91	GO:0003746: translation elongation factor activity	3.28E-02
92	GO:0042803: protein homodimerization activity	4.10E-02
93	GO:0005525: GTP binding	4.17E-02
94	GO:0005198: structural molecule activity	4.27E-02
95	GO:0046872: metal ion binding	4.48E-02
96	GO:0051287: NAD binding	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009575: chromoplast stroma	0.00E+00
4	GO:0009507: chloroplast	1.03E-34
5	GO:0009941: chloroplast envelope	8.92E-19
6	GO:0009570: chloroplast stroma	4.92E-16
7	GO:0009535: chloroplast thylakoid membrane	3.18E-15
8	GO:0009534: chloroplast thylakoid	1.71E-12
9	GO:0009579: thylakoid	6.84E-09
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.54E-06
11	GO:0048046: apoplast	7.68E-06
12	GO:0005960: glycine cleavage complex	1.33E-05
13	GO:0009782: photosystem I antenna complex	1.80E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	1.80E-04
15	GO:0010287: plastoglobule	2.62E-04
16	GO:0030076: light-harvesting complex	5.74E-04
17	GO:0009509: chromoplast	6.61E-04
18	GO:0030286: dynein complex	1.25E-03
19	GO:0009517: PSII associated light-harvesting complex II	1.25E-03
20	GO:0009706: chloroplast inner membrane	1.45E-03
21	GO:0009523: photosystem II	1.57E-03
22	GO:0009543: chloroplast thylakoid lumen	1.93E-03
23	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.96E-03
24	GO:0010319: stromule	2.16E-03
25	GO:0009707: chloroplast outer membrane	3.15E-03
26	GO:0009501: amyloplast	3.21E-03
27	GO:0031977: thylakoid lumen	4.72E-03
28	GO:0019013: viral nucleocapsid	6.86E-03
29	GO:0030095: chloroplast photosystem II	7.46E-03
30	GO:0005875: microtubule associated complex	8.71E-03
31	GO:0009654: photosystem II oxygen evolving complex	1.00E-02
32	GO:0005871: kinesin complex	1.37E-02
33	GO:0009522: photosystem I	1.60E-02
34	GO:0019898: extrinsic component of membrane	1.68E-02
35	GO:0009504: cell plate	1.68E-02
36	GO:0005694: chromosome	1.85E-02
37	GO:0009536: plastid	2.17E-02
38	GO:0030529: intracellular ribonucleoprotein complex	2.30E-02
39	GO:0005777: peroxisome	2.67E-02
40	GO:0019005: SCF ubiquitin ligase complex	2.77E-02
41	GO:0031969: chloroplast membrane	3.27E-02
42	GO:0005819: spindle	3.50E-02
43	GO:0016020: membrane	3.52E-02