Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G09030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031508: pericentric heterochromatin assembly0.00E+00
2GO:0048438: floral whorl development8.86E-06
3GO:0070981: L-asparagine biosynthetic process2.38E-05
4GO:0010220: positive regulation of vernalization response2.38E-05
5GO:0006529: asparagine biosynthetic process2.38E-05
6GO:0010424: DNA methylation on cytosine within a CG sequence2.38E-05
7GO:0090309: positive regulation of methylation-dependent chromatin silencing2.38E-05
8GO:0032776: DNA methylation on cytosine4.33E-05
9GO:0006556: S-adenosylmethionine biosynthetic process4.33E-05
10GO:0006555: methionine metabolic process1.52E-04
11GO:0009809: lignin biosynthetic process1.52E-04
12GO:0000060: protein import into nucleus, translocation1.52E-04
13GO:0010076: maintenance of floral meristem identity1.85E-04
14GO:0010077: maintenance of inflorescence meristem identity1.85E-04
15GO:0006400: tRNA modification2.19E-04
16GO:0006325: chromatin organization4.07E-04
17GO:0009739: response to gibberellin4.26E-04
18GO:0000272: polysaccharide catabolic process4.48E-04
19GO:0010216: maintenance of DNA methylation4.48E-04
20GO:0009698: phenylpropanoid metabolic process4.48E-04
21GO:0010582: floral meristem determinacy4.90E-04
22GO:0006541: glutamine metabolic process5.76E-04
23GO:0006730: one-carbon metabolic process8.54E-04
24GO:0009411: response to UV9.02E-04
25GO:0010584: pollen exine formation9.51E-04
26GO:0019722: calcium-mediated signaling9.51E-04
27GO:0000271: polysaccharide biosynthetic process1.05E-03
28GO:0045489: pectin biosynthetic process1.10E-03
29GO:0009646: response to absence of light1.16E-03
30GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.26E-03
31GO:1901657: glycosyl compound metabolic process1.38E-03
32GO:0007267: cell-cell signaling1.49E-03
33GO:0009813: flavonoid biosynthetic process1.99E-03
34GO:0016051: carbohydrate biosynthetic process2.25E-03
35GO:0000165: MAPK cascade3.03E-03
36GO:0009909: regulation of flower development3.49E-03
37GO:0071555: cell wall organization3.59E-03
38GO:0016569: covalent chromatin modification3.98E-03
39GO:0009845: seed germination5.10E-03
40GO:0007623: circadian rhythm6.03E-03
41GO:0045944: positive regulation of transcription from RNA polymerase II promoter7.74E-03
42GO:0009723: response to ethylene9.03E-03
43GO:0080167: response to karrikin9.48E-03
44GO:0016567: protein ubiquitination1.09E-02
45GO:0009751: response to salicylic acid1.24E-02
46GO:0009753: response to jasmonic acid1.31E-02
47GO:0008152: metabolic process1.34E-02
48GO:0051301: cell division1.99E-02
49GO:0045893: positive regulation of transcription, DNA-templated2.07E-02
50GO:0030154: cell differentiation3.30E-02
51GO:0009733: response to auxin3.37E-02
52GO:0009409: response to cold3.85E-02
53GO:0005975: carbohydrate metabolic process4.18E-02
RankGO TermAdjusted P value
1GO:0004071: aspartate-ammonia ligase activity8.86E-06
2GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity2.38E-05
3GO:0010429: methyl-CpNpN binding4.33E-05
4GO:0004478: methionine adenosyltransferase activity4.33E-05
5GO:0010428: methyl-CpNpG binding4.33E-05
6GO:0045430: chalcone isomerase activity9.27E-05
7GO:0046527: glucosyltransferase activity9.27E-05
8GO:0010385: double-stranded methylated DNA binding9.27E-05
9GO:0016161: beta-amylase activity1.85E-04
10GO:0016621: cinnamoyl-CoA reductase activity2.19E-04
11GO:0016207: 4-coumarate-CoA ligase activity3.29E-04
12GO:0008327: methyl-CpG binding4.48E-04
13GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity8.54E-04
14GO:0042803: protein homodimerization activity8.90E-04
15GO:0016759: cellulose synthase activity1.43E-03
16GO:0102483: scopolin beta-glucosidase activity1.79E-03
17GO:0008422: beta-glucosidase activity2.39E-03
18GO:0042393: histone binding2.46E-03
19GO:0016874: ligase activity3.98E-03
20GO:0016758: transferase activity, transferring hexosyl groups4.74E-03
21GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.28E-03
22GO:0046982: protein heterodimerization activity8.05E-03
23GO:0003682: chromatin binding8.48E-03
24GO:0061630: ubiquitin protein ligase activity9.83E-03
25GO:0004871: signal transducer activity1.11E-02
26GO:0016757: transferase activity, transferring glycosyl groups1.22E-02
27GO:0003924: GTPase activity1.25E-02
28GO:0003677: DNA binding2.16E-02
29GO:0005525: GTP binding2.67E-02
30GO:0004842: ubiquitin-protein transferase activity3.91E-02
31GO:0003729: mRNA binding4.12E-02
RankGO TermAdjusted P value
1GO:0010369: chromocenter1.85E-04
2GO:0005720: nuclear heterochromatin3.29E-04
3GO:0000139: Golgi membrane4.84E-03
4GO:0009579: thylakoid2.13E-02
5GO:0005622: intracellular2.83E-02
6GO:0009505: plant-type cell wall3.64E-02
7GO:0005730: nucleolus4.51E-02
8GO:0009506: plasmodesma4.74E-02
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Gene type



Gene DE type





AT5G10240