Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G05590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030149: sphingolipid catabolic process0.00E+00
2GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
3GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
4GO:0006983: ER overload response0.00E+00
5GO:0007141: male meiosis I0.00E+00
6GO:0010793: regulation of mRNA export from nucleus0.00E+00
7GO:0048227: plasma membrane to endosome transport0.00E+00
8GO:0010398: xylogalacturonan metabolic process0.00E+00
9GO:0032780: negative regulation of ATPase activity0.00E+00
10GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
11GO:0006858: extracellular transport0.00E+00
12GO:0001676: long-chain fatty acid metabolic process2.51E-05
13GO:0006914: autophagy2.65E-05
14GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.16E-04
15GO:0016559: peroxisome fission2.41E-04
16GO:0035344: hypoxanthine transport2.57E-04
17GO:0034214: protein hexamerization2.57E-04
18GO:0010265: SCF complex assembly2.57E-04
19GO:0098721: uracil import across plasma membrane2.57E-04
20GO:0098702: adenine import across plasma membrane2.57E-04
21GO:0080120: CAAX-box protein maturation2.57E-04
22GO:1903648: positive regulation of chlorophyll catabolic process2.57E-04
23GO:0098710: guanine import across plasma membrane2.57E-04
24GO:0071586: CAAX-box protein processing2.57E-04
25GO:0048363: mucilage pectin metabolic process2.57E-04
26GO:0015760: glucose-6-phosphate transport2.57E-04
27GO:0000303: response to superoxide2.57E-04
28GO:0006481: C-terminal protein methylation2.57E-04
29GO:0030968: endoplasmic reticulum unfolded protein response2.98E-04
30GO:0007264: small GTPase mediated signal transduction3.18E-04
31GO:0015031: protein transport4.98E-04
32GO:0043069: negative regulation of programmed cell death4.99E-04
33GO:0043066: negative regulation of apoptotic process5.68E-04
34GO:0019483: beta-alanine biosynthetic process5.68E-04
35GO:0015865: purine nucleotide transport5.68E-04
36GO:0019752: carboxylic acid metabolic process5.68E-04
37GO:0015712: hexose phosphate transport5.68E-04
38GO:0051258: protein polymerization5.68E-04
39GO:0006501: C-terminal protein lipidation5.68E-04
40GO:0019441: tryptophan catabolic process to kynurenine5.68E-04
41GO:0009156: ribonucleoside monophosphate biosynthetic process5.68E-04
42GO:0031648: protein destabilization5.68E-04
43GO:0050684: regulation of mRNA processing5.68E-04
44GO:0006672: ceramide metabolic process5.68E-04
45GO:0006212: uracil catabolic process5.68E-04
46GO:0000719: photoreactive repair5.68E-04
47GO:0000266: mitochondrial fission6.59E-04
48GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening9.22E-04
49GO:0010498: proteasomal protein catabolic process9.22E-04
50GO:0032784: regulation of DNA-templated transcription, elongation9.22E-04
51GO:0010359: regulation of anion channel activity9.22E-04
52GO:0061158: 3'-UTR-mediated mRNA destabilization9.22E-04
53GO:0010288: response to lead ion9.22E-04
54GO:0035436: triose phosphate transmembrane transport9.22E-04
55GO:0051176: positive regulation of sulfur metabolic process9.22E-04
56GO:0010476: gibberellin mediated signaling pathway9.22E-04
57GO:0010325: raffinose family oligosaccharide biosynthetic process9.22E-04
58GO:0009410: response to xenobiotic stimulus9.22E-04
59GO:0015714: phosphoenolpyruvate transport9.22E-04
60GO:0006631: fatty acid metabolic process1.10E-03
61GO:0006809: nitric oxide biosynthetic process1.32E-03
62GO:0080001: mucilage extrusion from seed coat1.32E-03
63GO:0010255: glucose mediated signaling pathway1.32E-03
64GO:0006986: response to unfolded protein1.32E-03
65GO:0010116: positive regulation of abscisic acid biosynthetic process1.32E-03
66GO:0034219: carbohydrate transmembrane transport1.32E-03
67GO:0046902: regulation of mitochondrial membrane permeability1.32E-03
68GO:0007005: mitochondrion organization1.52E-03
69GO:0042991: transcription factor import into nucleus1.76E-03
70GO:0015713: phosphoglycerate transport1.76E-03
71GO:0044804: nucleophagy1.76E-03
72GO:0009165: nucleotide biosynthetic process1.76E-03
73GO:0010109: regulation of photosynthesis1.76E-03
74GO:0033320: UDP-D-xylose biosynthetic process1.76E-03
75GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.76E-03
76GO:0046283: anthocyanin-containing compound metabolic process2.25E-03
77GO:0007029: endoplasmic reticulum organization2.25E-03
78GO:0000422: mitophagy2.25E-03
79GO:0006623: protein targeting to vacuole2.61E-03
80GO:1900425: negative regulation of defense response to bacterium2.77E-03
81GO:0035435: phosphate ion transmembrane transport2.77E-03
82GO:0009643: photosynthetic acclimation2.77E-03
83GO:0006014: D-ribose metabolic process2.77E-03
84GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.77E-03
85GO:0048232: male gamete generation2.77E-03
86GO:0070814: hydrogen sulfide biosynthetic process2.77E-03
87GO:0042732: D-xylose metabolic process2.77E-03
88GO:0000045: autophagosome assembly2.77E-03
89GO:0045040: protein import into mitochondrial outer membrane2.77E-03
90GO:1902456: regulation of stomatal opening2.77E-03
91GO:0006796: phosphate-containing compound metabolic process2.77E-03
92GO:0010193: response to ozone2.79E-03
93GO:0048280: vesicle fusion with Golgi apparatus3.33E-03
94GO:0098655: cation transmembrane transport3.33E-03
95GO:0048444: floral organ morphogenesis3.33E-03
96GO:1900057: positive regulation of leaf senescence3.93E-03
97GO:1902074: response to salt3.93E-03
98GO:0050790: regulation of catalytic activity3.93E-03
99GO:0009395: phospholipid catabolic process3.93E-03
100GO:0009816: defense response to bacterium, incompatible interaction4.26E-03
101GO:0009819: drought recovery4.56E-03
102GO:0006605: protein targeting4.56E-03
103GO:1900150: regulation of defense response to fungus4.56E-03
104GO:0006102: isocitrate metabolic process4.56E-03
105GO:0043562: cellular response to nitrogen levels5.22E-03
106GO:0009827: plant-type cell wall modification5.22E-03
107GO:0010150: leaf senescence5.59E-03
108GO:0008152: metabolic process5.89E-03
109GO:0009056: catabolic process5.92E-03
110GO:0009821: alkaloid biosynthetic process5.92E-03
111GO:0006468: protein phosphorylation6.43E-03
112GO:0008202: steroid metabolic process6.64E-03
113GO:0009867: jasmonic acid mediated signaling pathway6.65E-03
114GO:0016310: phosphorylation6.91E-03
115GO:0051026: chiasma assembly7.40E-03
116GO:0019538: protein metabolic process7.40E-03
117GO:0000103: sulfate assimilation7.40E-03
118GO:0010629: negative regulation of gene expression7.40E-03
119GO:0006896: Golgi to vacuole transport7.40E-03
120GO:0015770: sucrose transport8.19E-03
121GO:0000038: very long-chain fatty acid metabolic process8.19E-03
122GO:0051707: response to other organism8.59E-03
123GO:0000209: protein polyubiquitination8.93E-03
124GO:0012501: programmed cell death9.00E-03
125GO:0006626: protein targeting to mitochondrion9.85E-03
126GO:0010102: lateral root morphogenesis9.85E-03
127GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process9.85E-03
128GO:0009860: pollen tube growth1.07E-02
129GO:0006970: response to osmotic stress1.07E-02
130GO:0009846: pollen germination1.08E-02
131GO:0009738: abscisic acid-activated signaling pathway1.15E-02
132GO:0005985: sucrose metabolic process1.16E-02
133GO:0009225: nucleotide-sugar metabolic process1.16E-02
134GO:0034976: response to endoplasmic reticulum stress1.25E-02
135GO:0009863: salicylic acid mediated signaling pathway1.35E-02
136GO:2000377: regulation of reactive oxygen species metabolic process1.35E-02
137GO:0009116: nucleoside metabolic process1.35E-02
138GO:0006874: cellular calcium ion homeostasis1.45E-02
139GO:0015992: proton transport1.55E-02
140GO:0031408: oxylipin biosynthetic process1.55E-02
141GO:0045454: cell redox homeostasis1.61E-02
142GO:0030433: ubiquitin-dependent ERAD pathway1.65E-02
143GO:0031348: negative regulation of defense response1.65E-02
144GO:0080092: regulation of pollen tube growth1.65E-02
145GO:0009814: defense response, incompatible interaction1.65E-02
146GO:0016226: iron-sulfur cluster assembly1.65E-02
147GO:0007131: reciprocal meiotic recombination1.65E-02
148GO:0009624: response to nematode1.65E-02
149GO:0055085: transmembrane transport1.73E-02
150GO:0055114: oxidation-reduction process1.75E-02
151GO:0009411: response to UV1.76E-02
152GO:0006012: galactose metabolic process1.76E-02
153GO:0006817: phosphate ion transport1.86E-02
154GO:0010091: trichome branching1.86E-02
155GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.97E-02
156GO:0051028: mRNA transport1.97E-02
157GO:0042147: retrograde transport, endosome to Golgi1.97E-02
158GO:0010087: phloem or xylem histogenesis2.09E-02
159GO:0045489: pectin biosynthetic process2.20E-02
160GO:0006520: cellular amino acid metabolic process2.20E-02
161GO:0005975: carbohydrate metabolic process2.25E-02
162GO:0042752: regulation of circadian rhythm2.32E-02
163GO:0009790: embryo development2.42E-02
164GO:0048825: cotyledon development2.43E-02
165GO:0009749: response to glucose2.43E-02
166GO:0019252: starch biosynthetic process2.43E-02
167GO:0010183: pollen tube guidance2.43E-02
168GO:0071554: cell wall organization or biogenesis2.56E-02
169GO:0006891: intra-Golgi vesicle-mediated transport2.56E-02
170GO:0016032: viral process2.68E-02
171GO:0009630: gravitropism2.68E-02
172GO:1901657: glycosyl compound metabolic process2.80E-02
173GO:0009873: ethylene-activated signaling pathway2.89E-02
174GO:0006310: DNA recombination2.93E-02
175GO:0006904: vesicle docking involved in exocytosis3.06E-02
176GO:0051607: defense response to virus3.19E-02
177GO:0001666: response to hypoxia3.32E-02
178GO:0009615: response to virus3.32E-02
179GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.46E-02
180GO:0006888: ER to Golgi vesicle-mediated transport3.73E-02
181GO:0006499: N-terminal protein myristoylation4.30E-02
182GO:0010119: regulation of stomatal movement4.45E-02
183GO:0006099: tricarboxylic acid cycle4.90E-02
184GO:0007049: cell cycle4.92E-02
RankGO TermAdjusted P value
1GO:0004157: dihydropyrimidinase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
4GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
5GO:0052642: lysophosphatidic acid phosphatase activity0.00E+00
6GO:0019776: Atg8 ligase activity4.54E-05
7GO:0005515: protein binding1.30E-04
8GO:0102391: decanoate--CoA ligase activity1.45E-04
9GO:0004467: long-chain fatty acid-CoA ligase activity1.90E-04
10GO:0016301: kinase activity1.92E-04
11GO:0015294: solute:cation symporter activity2.57E-04
12GO:0015207: adenine transmembrane transporter activity2.57E-04
13GO:0019786: Atg8-specific protease activity2.57E-04
14GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity2.57E-04
15GO:0015208: guanine transmembrane transporter activity2.57E-04
16GO:0071949: FAD binding3.60E-04
17GO:0005524: ATP binding4.04E-04
18GO:0004061: arylformamidase activity5.68E-04
19GO:0043141: ATP-dependent 5'-3' DNA helicase activity5.68E-04
20GO:0019779: Atg8 activating enzyme activity5.68E-04
21GO:0015036: disulfide oxidoreductase activity5.68E-04
22GO:0004450: isocitrate dehydrogenase (NADP+) activity5.68E-04
23GO:0032791: lead ion binding5.68E-04
24GO:0010331: gibberellin binding5.68E-04
25GO:0015152: glucose-6-phosphate transmembrane transporter activity5.68E-04
26GO:0005315: inorganic phosphate transmembrane transporter activity7.47E-04
27GO:0000975: regulatory region DNA binding9.22E-04
28GO:0004781: sulfate adenylyltransferase (ATP) activity9.22E-04
29GO:0071917: triose-phosphate transmembrane transporter activity9.22E-04
30GO:0005093: Rab GDP-dissociation inhibitor activity9.22E-04
31GO:0008430: selenium binding9.22E-04
32GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.32E-03
33GO:0031176: endo-1,4-beta-xylanase activity1.32E-03
34GO:0004749: ribose phosphate diphosphokinase activity1.32E-03
35GO:0016004: phospholipase activator activity1.76E-03
36GO:0000062: fatty-acyl-CoA binding1.76E-03
37GO:0004301: epoxide hydrolase activity1.76E-03
38GO:0015120: phosphoglycerate transmembrane transporter activity1.76E-03
39GO:0015210: uracil transmembrane transporter activity1.76E-03
40GO:0004674: protein serine/threonine kinase activity1.88E-03
41GO:0000287: magnesium ion binding1.96E-03
42GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.25E-03
43GO:0004040: amidase activity2.25E-03
44GO:0005496: steroid binding2.25E-03
45GO:0005471: ATP:ADP antiporter activity2.25E-03
46GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.25E-03
47GO:0035252: UDP-xylosyltransferase activity2.77E-03
48GO:0036402: proteasome-activating ATPase activity2.77E-03
49GO:0048040: UDP-glucuronate decarboxylase activity2.77E-03
50GO:0031593: polyubiquitin binding2.77E-03
51GO:0003950: NAD+ ADP-ribosyltransferase activity3.33E-03
52GO:0004012: phospholipid-translocating ATPase activity3.33E-03
53GO:0004747: ribokinase activity3.33E-03
54GO:0003978: UDP-glucose 4-epimerase activity3.33E-03
55GO:0070403: NAD+ binding3.33E-03
56GO:0016831: carboxy-lyase activity3.93E-03
57GO:0008506: sucrose:proton symporter activity3.93E-03
58GO:0102425: myricetin 3-O-glucosyltransferase activity3.93E-03
59GO:0102360: daphnetin 3-O-glucosyltransferase activity3.93E-03
60GO:0051213: dioxygenase activity4.03E-03
61GO:0008865: fructokinase activity4.56E-03
62GO:0047893: flavonol 3-O-glucosyltransferase activity4.56E-03
63GO:0008142: oxysterol binding5.22E-03
64GO:0003678: DNA helicase activity5.92E-03
65GO:0030955: potassium ion binding6.64E-03
66GO:0016844: strictosidine synthase activity6.64E-03
67GO:0004743: pyruvate kinase activity6.64E-03
68GO:0008047: enzyme activator activity7.40E-03
69GO:0008794: arsenate reductase (glutaredoxin) activity8.19E-03
70GO:0005543: phospholipid binding8.19E-03
71GO:0004521: endoribonuclease activity9.00E-03
72GO:0005509: calcium ion binding9.59E-03
73GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.85E-03
74GO:0000175: 3'-5'-exoribonuclease activity9.85E-03
75GO:0016887: ATPase activity9.86E-03
76GO:0004535: poly(A)-specific ribonuclease activity1.07E-02
77GO:0031624: ubiquitin conjugating enzyme binding1.07E-02
78GO:0004175: endopeptidase activity1.07E-02
79GO:0004970: ionotropic glutamate receptor activity1.16E-02
80GO:0005217: intracellular ligand-gated ion channel activity1.16E-02
81GO:0017025: TBP-class protein binding1.16E-02
82GO:0004497: monooxygenase activity1.28E-02
83GO:0008134: transcription factor binding1.35E-02
84GO:0043130: ubiquitin binding1.35E-02
85GO:0061630: ubiquitin protein ligase activity1.37E-02
86GO:0043424: protein histidine kinase binding1.45E-02
87GO:0016787: hydrolase activity1.48E-02
88GO:0019706: protein-cysteine S-palmitoyltransferase activity1.55E-02
89GO:0008408: 3'-5' exonuclease activity1.55E-02
90GO:0035251: UDP-glucosyltransferase activity1.55E-02
91GO:0004540: ribonuclease activity1.55E-02
92GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.84E-02
93GO:0003727: single-stranded RNA binding1.86E-02
94GO:0047134: protein-disulfide reductase activity1.97E-02
95GO:0010181: FMN binding2.32E-02
96GO:0004791: thioredoxin-disulfide reductase activity2.32E-02
97GO:0016853: isomerase activity2.32E-02
98GO:0004872: receptor activity2.43E-02
99GO:0015144: carbohydrate transmembrane transporter activity2.48E-02
100GO:0004197: cysteine-type endopeptidase activity2.68E-02
101GO:0005351: sugar:proton symporter activity2.80E-02
102GO:0008483: transaminase activity3.06E-02
103GO:0016597: amino acid binding3.19E-02
104GO:0016413: O-acetyltransferase activity3.19E-02
105GO:0008194: UDP-glycosyltransferase activity3.20E-02
106GO:0009931: calcium-dependent protein serine/threonine kinase activity3.59E-02
107GO:0042802: identical protein binding3.64E-02
108GO:0004806: triglyceride lipase activity3.73E-02
109GO:0004683: calmodulin-dependent protein kinase activity3.73E-02
110GO:0102483: scopolin beta-glucosidase activity3.73E-02
111GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.01E-02
112GO:0005096: GTPase activator activity4.16E-02
113GO:0004222: metalloendopeptidase activity4.30E-02
114GO:0016788: hydrolase activity, acting on ester bonds4.50E-02
115GO:0003697: single-stranded DNA binding4.75E-02
116GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.75E-02
117GO:0003993: acid phosphatase activity4.90E-02
RankGO TermAdjusted P value
1GO:0045335: phagocytic vesicle0.00E+00
2GO:0005783: endoplasmic reticulum2.54E-07
3GO:0005789: endoplasmic reticulum membrane9.63E-06
4GO:0005773: vacuole2.69E-05
5GO:0005778: peroxisomal membrane3.00E-05
6GO:0016021: integral component of membrane2.53E-04
7GO:0030014: CCR4-NOT complex2.57E-04
8GO:0005635: nuclear envelope2.88E-04
9GO:0005886: plasma membrane3.78E-04
10GO:0005829: cytosol5.30E-04
11GO:0034274: Atg12-Atg5-Atg16 complex5.68E-04
12GO:0031314: extrinsic component of mitochondrial inner membrane5.68E-04
13GO:0042406: extrinsic component of endoplasmic reticulum membrane9.22E-04
14GO:0070062: extracellular exosome1.32E-03
15GO:0031461: cullin-RING ubiquitin ligase complex1.32E-03
16GO:0005775: vacuolar lumen1.32E-03
17GO:0005794: Golgi apparatus1.38E-03
18GO:0005741: mitochondrial outer membrane1.39E-03
19GO:0005776: autophagosome1.76E-03
20GO:0030140: trans-Golgi network transport vesicle2.77E-03
21GO:0016363: nuclear matrix3.33E-03
22GO:0016272: prefoldin complex3.33E-03
23GO:0031597: cytosolic proteasome complex3.33E-03
24GO:0000794: condensed nuclear chromosome3.93E-03
25GO:0031595: nuclear proteasome complex3.93E-03
26GO:0005777: peroxisome4.10E-03
27GO:0000421: autophagosome membrane4.56E-03
28GO:0012507: ER to Golgi transport vesicle membrane4.56E-03
29GO:0016020: membrane4.94E-03
30GO:0005742: mitochondrial outer membrane translocase complex5.22E-03
31GO:0034045: pre-autophagosomal structure membrane5.22E-03
32GO:0009514: glyoxysome5.22E-03
33GO:0000151: ubiquitin ligase complex5.25E-03
34GO:0008540: proteasome regulatory particle, base subcomplex6.64E-03
35GO:0005819: spindle7.27E-03
36GO:0005802: trans-Golgi network7.34E-03
37GO:0017119: Golgi transport complex7.40E-03
38GO:0031902: late endosome membrane7.91E-03
39GO:0048471: perinuclear region of cytoplasm8.19E-03
40GO:0031307: integral component of mitochondrial outer membrane9.00E-03
41GO:0005764: lysosome1.07E-02
42GO:0030176: integral component of endoplasmic reticulum membrane1.16E-02
43GO:0012505: endomembrane system1.61E-02
44GO:0031410: cytoplasmic vesicle1.65E-02
45GO:0005744: mitochondrial inner membrane presequence translocase complex1.86E-02
46GO:0000790: nuclear chromatin1.97E-02
47GO:0005623: cell2.13E-02
48GO:0009524: phragmoplast2.19E-02
49GO:0005770: late endosome2.20E-02
50GO:0000145: exocyst2.68E-02
51GO:0005768: endosome2.96E-02
52GO:0005774: vacuolar membrane3.63E-02
53GO:0005643: nuclear pore4.01E-02
54GO:0000325: plant-type vacuole4.45E-02
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Gene type



Gene DE type