GO Enrichment Analysis of Co-expressed Genes with
AT4G04840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:0045176: apical protein localization | 0.00E+00 |
| 4 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 5 | GO:0042493: response to drug | 0.00E+00 |
| 6 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 7 | GO:0046620: regulation of organ growth | 4.89E-11 |
| 8 | GO:0006412: translation | 1.55E-10 |
| 9 | GO:0032544: plastid translation | 1.91E-08 |
| 10 | GO:0042254: ribosome biogenesis | 7.22E-07 |
| 11 | GO:0009735: response to cytokinin | 2.39E-05 |
| 12 | GO:0015979: photosynthesis | 2.72E-05 |
| 13 | GO:0009926: auxin polar transport | 4.69E-05 |
| 14 | GO:0042335: cuticle development | 7.63E-05 |
| 15 | GO:0043489: RNA stabilization | 1.62E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 1.62E-04 |
| 17 | GO:0042371: vitamin K biosynthetic process | 1.62E-04 |
| 18 | GO:0034337: RNA folding | 1.62E-04 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.62E-04 |
| 20 | GO:0015995: chlorophyll biosynthetic process | 2.49E-04 |
| 21 | GO:0009733: response to auxin | 2.82E-04 |
| 22 | GO:0006006: glucose metabolic process | 3.96E-04 |
| 23 | GO:0010143: cutin biosynthetic process | 4.47E-04 |
| 24 | GO:0010207: photosystem II assembly | 4.47E-04 |
| 25 | GO:0006518: peptide metabolic process | 6.04E-04 |
| 26 | GO:0009734: auxin-activated signaling pathway | 6.74E-04 |
| 27 | GO:0009658: chloroplast organization | 7.49E-04 |
| 28 | GO:0080170: hydrogen peroxide transmembrane transport | 8.63E-04 |
| 29 | GO:0009650: UV protection | 8.63E-04 |
| 30 | GO:1901332: negative regulation of lateral root development | 8.63E-04 |
| 31 | GO:0009416: response to light stimulus | 1.01E-03 |
| 32 | GO:0034220: ion transmembrane transport | 1.11E-03 |
| 33 | GO:0000413: protein peptidyl-prolyl isomerization | 1.11E-03 |
| 34 | GO:0030104: water homeostasis | 1.14E-03 |
| 35 | GO:0045727: positive regulation of translation | 1.14E-03 |
| 36 | GO:0006564: L-serine biosynthetic process | 1.45E-03 |
| 37 | GO:0048827: phyllome development | 1.78E-03 |
| 38 | GO:0042549: photosystem II stabilization | 1.78E-03 |
| 39 | GO:0010027: thylakoid membrane organization | 2.10E-03 |
| 40 | GO:0009854: oxidative photosynthetic carbon pathway | 2.14E-03 |
| 41 | GO:0010019: chloroplast-nucleus signaling pathway | 2.14E-03 |
| 42 | GO:0080086: stamen filament development | 2.14E-03 |
| 43 | GO:0010196: nonphotochemical quenching | 2.52E-03 |
| 44 | GO:0032508: DNA duplex unwinding | 2.91E-03 |
| 45 | GO:0009631: cold acclimation | 3.16E-03 |
| 46 | GO:0034599: cellular response to oxidative stress | 3.61E-03 |
| 47 | GO:0010206: photosystem II repair | 3.77E-03 |
| 48 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.77E-03 |
| 49 | GO:0010205: photoinhibition | 4.22E-03 |
| 50 | GO:0009638: phototropism | 4.22E-03 |
| 51 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.22E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.69E-03 |
| 53 | GO:0048829: root cap development | 4.69E-03 |
| 54 | GO:0019684: photosynthesis, light reaction | 5.19E-03 |
| 55 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.19E-03 |
| 56 | GO:0043085: positive regulation of catalytic activity | 5.19E-03 |
| 57 | GO:0006855: drug transmembrane transport | 5.19E-03 |
| 58 | GO:0009684: indoleacetic acid biosynthetic process | 5.19E-03 |
| 59 | GO:0010015: root morphogenesis | 5.19E-03 |
| 60 | GO:0000038: very long-chain fatty acid metabolic process | 5.19E-03 |
| 61 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.69E-03 |
| 62 | GO:0010229: inflorescence development | 6.22E-03 |
| 63 | GO:0019253: reductive pentose-phosphate cycle | 6.76E-03 |
| 64 | GO:0010540: basipetal auxin transport | 6.76E-03 |
| 65 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.90E-03 |
| 66 | GO:0006833: water transport | 7.90E-03 |
| 67 | GO:0000027: ribosomal large subunit assembly | 8.48E-03 |
| 68 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.09E-03 |
| 69 | GO:0031408: oxylipin biosynthetic process | 9.72E-03 |
| 70 | GO:0003333: amino acid transmembrane transport | 9.72E-03 |
| 71 | GO:0008152: metabolic process | 1.03E-02 |
| 72 | GO:0035428: hexose transmembrane transport | 1.04E-02 |
| 73 | GO:0009411: response to UV | 1.10E-02 |
| 74 | GO:0006284: base-excision repair | 1.17E-02 |
| 75 | GO:0009306: protein secretion | 1.17E-02 |
| 76 | GO:0009790: embryo development | 1.25E-02 |
| 77 | GO:0042742: defense response to bacterium | 1.29E-02 |
| 78 | GO:0006662: glycerol ether metabolic process | 1.38E-02 |
| 79 | GO:0048868: pollen tube development | 1.38E-02 |
| 80 | GO:0046323: glucose import | 1.38E-02 |
| 81 | GO:0048825: cotyledon development | 1.52E-02 |
| 82 | GO:0071554: cell wall organization or biogenesis | 1.60E-02 |
| 83 | GO:0000302: response to reactive oxygen species | 1.60E-02 |
| 84 | GO:0016132: brassinosteroid biosynthetic process | 1.60E-02 |
| 85 | GO:0009630: gravitropism | 1.67E-02 |
| 86 | GO:0030163: protein catabolic process | 1.75E-02 |
| 87 | GO:0071281: cellular response to iron ion | 1.75E-02 |
| 88 | GO:0009409: response to cold | 2.03E-02 |
| 89 | GO:0009911: positive regulation of flower development | 2.07E-02 |
| 90 | GO:0016126: sterol biosynthetic process | 2.07E-02 |
| 91 | GO:0009817: defense response to fungus, incompatible interaction | 2.51E-02 |
| 92 | GO:0018298: protein-chromophore linkage | 2.51E-02 |
| 93 | GO:0010311: lateral root formation | 2.60E-02 |
| 94 | GO:0009407: toxin catabolic process | 2.69E-02 |
| 95 | GO:0010218: response to far red light | 2.69E-02 |
| 96 | GO:0006865: amino acid transport | 2.87E-02 |
| 97 | GO:0045087: innate immune response | 2.97E-02 |
| 98 | GO:0009637: response to blue light | 2.97E-02 |
| 99 | GO:0009853: photorespiration | 2.97E-02 |
| 100 | GO:0030001: metal ion transport | 3.26E-02 |
| 101 | GO:0006631: fatty acid metabolic process | 3.35E-02 |
| 102 | GO:0045454: cell redox homeostasis | 3.40E-02 |
| 103 | GO:0010114: response to red light | 3.55E-02 |
| 104 | GO:0006869: lipid transport | 3.73E-02 |
| 105 | GO:0007165: signal transduction | 3.83E-02 |
| 106 | GO:0009636: response to toxic substance | 3.86E-02 |
| 107 | GO:0055114: oxidation-reduction process | 3.91E-02 |
| 108 | GO:0016042: lipid catabolic process | 4.07E-02 |
| 109 | GO:0006281: DNA repair | 4.18E-02 |
| 110 | GO:0009664: plant-type cell wall organization | 4.18E-02 |
| 111 | GO:0006364: rRNA processing | 4.39E-02 |
| 112 | GO:0009585: red, far-red light phototransduction | 4.39E-02 |
| 113 | GO:0009793: embryo development ending in seed dormancy | 4.45E-02 |
| 114 | GO:0071555: cell wall organization | 4.52E-02 |
| 115 | GO:0006096: glycolytic process | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 1.19E-17 |
| 8 | GO:0003735: structural constituent of ribosome | 9.18E-13 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.18E-09 |
| 10 | GO:0005528: FK506 binding | 7.26E-09 |
| 11 | GO:0008266: poly(U) RNA binding | 1.65E-05 |
| 12 | GO:0000248: C-5 sterol desaturase activity | 1.62E-04 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.69E-04 |
| 14 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.69E-04 |
| 15 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.69E-04 |
| 16 | GO:0050734: hydroxycinnamoyltransferase activity | 6.04E-04 |
| 17 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.04E-04 |
| 18 | GO:0016851: magnesium chelatase activity | 8.63E-04 |
| 19 | GO:0043023: ribosomal large subunit binding | 8.63E-04 |
| 20 | GO:0008097: 5S rRNA binding | 8.63E-04 |
| 21 | GO:0010328: auxin influx transmembrane transporter activity | 1.14E-03 |
| 22 | GO:0052793: pectin acetylesterase activity | 1.14E-03 |
| 23 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.14E-03 |
| 24 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.14E-03 |
| 25 | GO:0052689: carboxylic ester hydrolase activity | 1.20E-03 |
| 26 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.45E-03 |
| 27 | GO:0004040: amidase activity | 1.45E-03 |
| 28 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.45E-03 |
| 29 | GO:0009922: fatty acid elongase activity | 1.45E-03 |
| 30 | GO:0004130: cytochrome-c peroxidase activity | 1.78E-03 |
| 31 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.78E-03 |
| 32 | GO:0016688: L-ascorbate peroxidase activity | 1.78E-03 |
| 33 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.78E-03 |
| 34 | GO:0015250: water channel activity | 2.10E-03 |
| 35 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.33E-03 |
| 36 | GO:0050661: NADP binding | 3.93E-03 |
| 37 | GO:0008047: enzyme activator activity | 4.69E-03 |
| 38 | GO:0051287: NAD binding | 5.38E-03 |
| 39 | GO:0004565: beta-galactosidase activity | 6.22E-03 |
| 40 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.22E-03 |
| 41 | GO:0004871: signal transducer activity | 7.38E-03 |
| 42 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 7.90E-03 |
| 43 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 7.90E-03 |
| 44 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 7.90E-03 |
| 45 | GO:0031409: pigment binding | 7.90E-03 |
| 46 | GO:0030570: pectate lyase activity | 1.10E-02 |
| 47 | GO:0016829: lyase activity | 1.16E-02 |
| 48 | GO:0047134: protein-disulfide reductase activity | 1.24E-02 |
| 49 | GO:0016787: hydrolase activity | 1.31E-02 |
| 50 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 51 | GO:0005355: glucose transmembrane transporter activity | 1.45E-02 |
| 52 | GO:0050662: coenzyme binding | 1.45E-02 |
| 53 | GO:0004791: thioredoxin-disulfide reductase activity | 1.45E-02 |
| 54 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.75E-02 |
| 55 | GO:0016791: phosphatase activity | 1.83E-02 |
| 56 | GO:0016491: oxidoreductase activity | 1.95E-02 |
| 57 | GO:0016597: amino acid binding | 1.99E-02 |
| 58 | GO:0016413: O-acetyltransferase activity | 1.99E-02 |
| 59 | GO:0016168: chlorophyll binding | 2.16E-02 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 2.34E-02 |
| 61 | GO:0003729: mRNA binding | 2.34E-02 |
| 62 | GO:0008236: serine-type peptidase activity | 2.42E-02 |
| 63 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.51E-02 |
| 64 | GO:0015238: drug transmembrane transporter activity | 2.60E-02 |
| 65 | GO:0005096: GTPase activator activity | 2.60E-02 |
| 66 | GO:0004222: metalloendopeptidase activity | 2.69E-02 |
| 67 | GO:0003746: translation elongation factor activity | 2.97E-02 |
| 68 | GO:0003993: acid phosphatase activity | 3.06E-02 |
| 69 | GO:0004364: glutathione transferase activity | 3.45E-02 |
| 70 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.76E-02 |
| 71 | GO:0015293: symporter activity | 3.86E-02 |
| 72 | GO:0005509: calcium ion binding | 4.09E-02 |
| 73 | GO:0015171: amino acid transmembrane transporter activity | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 3.02E-31 |
| 2 | GO:0009507: chloroplast | 1.20E-27 |
| 3 | GO:0009941: chloroplast envelope | 9.35E-21 |
| 4 | GO:0009579: thylakoid | 5.36E-17 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 6.22E-16 |
| 6 | GO:0031977: thylakoid lumen | 7.67E-15 |
| 7 | GO:0005840: ribosome | 2.72E-11 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.87E-11 |
| 9 | GO:0009534: chloroplast thylakoid | 4.86E-08 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 3.38E-05 |
| 11 | GO:0016020: membrane | 1.01E-04 |
| 12 | GO:0019898: extrinsic component of membrane | 1.06E-04 |
| 13 | GO:0043674: columella | 1.62E-04 |
| 14 | GO:0009547: plastid ribosome | 1.62E-04 |
| 15 | GO:0000311: plastid large ribosomal subunit | 3.48E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 6.04E-04 |
| 17 | GO:0009531: secondary cell wall | 8.63E-04 |
| 18 | GO:0031969: chloroplast membrane | 1.03E-03 |
| 19 | GO:0042807: central vacuole | 2.52E-03 |
| 20 | GO:0009533: chloroplast stromal thylakoid | 2.52E-03 |
| 21 | GO:0015934: large ribosomal subunit | 3.16E-03 |
| 22 | GO:0008180: COP9 signalosome | 3.77E-03 |
| 23 | GO:0009505: plant-type cell wall | 5.15E-03 |
| 24 | GO:0032040: small-subunit processome | 5.69E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 6.76E-03 |
| 26 | GO:0030076: light-harvesting complex | 7.32E-03 |
| 27 | GO:0042651: thylakoid membrane | 9.09E-03 |
| 28 | GO:0015935: small ribosomal subunit | 9.72E-03 |
| 29 | GO:0010287: plastoglobule | 1.01E-02 |
| 30 | GO:0005770: late endosome | 1.38E-02 |
| 31 | GO:0009522: photosystem I | 1.45E-02 |
| 32 | GO:0005886: plasma membrane | 1.53E-02 |
| 33 | GO:0022626: cytosolic ribosome | 1.78E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 2.07E-02 |
| 35 | GO:0019005: SCF ubiquitin ligase complex | 2.51E-02 |
| 36 | GO:0022625: cytosolic large ribosomal subunit | 2.99E-02 |
| 37 | GO:0048046: apoplast | 3.20E-02 |
| 38 | GO:0031225: anchored component of membrane | 3.28E-02 |
| 39 | GO:0005618: cell wall | 3.69E-02 |
| 40 | GO:0000502: proteasome complex | 4.39E-02 |