GO Enrichment Analysis of Co-expressed Genes with
AT4G04640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0090391: granum assembly | 1.40E-10 |
| 5 | GO:0010027: thylakoid membrane organization | 1.11E-07 |
| 6 | GO:0015979: photosynthesis | 1.88E-06 |
| 7 | GO:0010196: nonphotochemical quenching | 8.12E-06 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.50E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 3.50E-05 |
| 11 | GO:0043686: co-translational protein modification | 3.50E-05 |
| 12 | GO:0034337: RNA folding | 3.50E-05 |
| 13 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 8.78E-05 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 8.78E-05 |
| 15 | GO:1902448: positive regulation of shade avoidance | 1.52E-04 |
| 16 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.52E-04 |
| 17 | GO:0051604: protein maturation | 1.52E-04 |
| 18 | GO:2001141: regulation of RNA biosynthetic process | 2.25E-04 |
| 19 | GO:0009765: photosynthesis, light harvesting | 3.05E-04 |
| 20 | GO:0006109: regulation of carbohydrate metabolic process | 3.05E-04 |
| 21 | GO:0015994: chlorophyll metabolic process | 3.05E-04 |
| 22 | GO:0010021: amylopectin biosynthetic process | 3.05E-04 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 3.47E-04 |
| 24 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.89E-04 |
| 25 | GO:0031365: N-terminal protein amino acid modification | 3.89E-04 |
| 26 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 4.78E-04 |
| 27 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 4.78E-04 |
| 28 | GO:1901259: chloroplast rRNA processing | 5.70E-04 |
| 29 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 6.66E-04 |
| 30 | GO:0009642: response to light intensity | 7.68E-04 |
| 31 | GO:0071482: cellular response to light stimulus | 8.71E-04 |
| 32 | GO:0043085: positive regulation of catalytic activity | 1.32E-03 |
| 33 | GO:0006352: DNA-templated transcription, initiation | 1.32E-03 |
| 34 | GO:0005983: starch catabolic process | 1.44E-03 |
| 35 | GO:0016114: terpenoid biosynthetic process | 2.41E-03 |
| 36 | GO:0016226: iron-sulfur cluster assembly | 2.56E-03 |
| 37 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.71E-03 |
| 38 | GO:0009561: megagametogenesis | 2.87E-03 |
| 39 | GO:0009306: protein secretion | 2.87E-03 |
| 40 | GO:0009658: chloroplast organization | 2.99E-03 |
| 41 | GO:0080022: primary root development | 3.20E-03 |
| 42 | GO:0000413: protein peptidyl-prolyl isomerization | 3.20E-03 |
| 43 | GO:0006662: glycerol ether metabolic process | 3.36E-03 |
| 44 | GO:0019252: starch biosynthetic process | 3.70E-03 |
| 45 | GO:0080167: response to karrikin | 3.70E-03 |
| 46 | GO:0009828: plant-type cell wall loosening | 4.42E-03 |
| 47 | GO:0018298: protein-chromophore linkage | 5.99E-03 |
| 48 | GO:0009637: response to blue light | 7.05E-03 |
| 49 | GO:0034599: cellular response to oxidative stress | 7.27E-03 |
| 50 | GO:0010114: response to red light | 8.41E-03 |
| 51 | GO:0009735: response to cytokinin | 8.81E-03 |
| 52 | GO:0009664: plant-type cell wall organization | 9.86E-03 |
| 53 | GO:0006096: glycolytic process | 1.17E-02 |
| 54 | GO:0043086: negative regulation of catalytic activity | 1.17E-02 |
| 55 | GO:0009742: brassinosteroid mediated signaling pathway | 1.38E-02 |
| 56 | GO:0006470: protein dephosphorylation | 2.15E-02 |
| 57 | GO:0009826: unidimensional cell growth | 2.60E-02 |
| 58 | GO:0042254: ribosome biogenesis | 2.71E-02 |
| 59 | GO:0006810: transport | 2.88E-02 |
| 60 | GO:0045454: cell redox homeostasis | 3.54E-02 |
| 61 | GO:0006869: lipid transport | 3.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0016851: magnesium chelatase activity | 7.73E-07 |
| 4 | GO:0050308: sugar-phosphatase activity | 3.50E-05 |
| 5 | GO:0042586: peptide deformylase activity | 3.50E-05 |
| 6 | GO:0019203: carbohydrate phosphatase activity | 3.50E-05 |
| 7 | GO:0033201: alpha-1,4-glucan synthase activity | 8.78E-05 |
| 8 | GO:0016630: protochlorophyllide reductase activity | 8.78E-05 |
| 9 | GO:0047746: chlorophyllase activity | 8.78E-05 |
| 10 | GO:0004373: glycogen (starch) synthase activity | 1.52E-04 |
| 11 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 3.05E-04 |
| 12 | GO:0016987: sigma factor activity | 3.05E-04 |
| 13 | GO:0043495: protein anchor | 3.05E-04 |
| 14 | GO:0009011: starch synthase activity | 3.05E-04 |
| 15 | GO:0001053: plastid sigma factor activity | 3.05E-04 |
| 16 | GO:0003959: NADPH dehydrogenase activity | 3.89E-04 |
| 17 | GO:2001070: starch binding | 4.78E-04 |
| 18 | GO:0019899: enzyme binding | 6.66E-04 |
| 19 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.17E-04 |
| 20 | GO:0008312: 7S RNA binding | 7.68E-04 |
| 21 | GO:0004033: aldo-keto reductase (NADP) activity | 7.68E-04 |
| 22 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 9.78E-04 |
| 23 | GO:0008047: enzyme activator activity | 1.20E-03 |
| 24 | GO:0019843: rRNA binding | 1.42E-03 |
| 25 | GO:0031072: heat shock protein binding | 1.57E-03 |
| 26 | GO:0004857: enzyme inhibitor activity | 2.12E-03 |
| 27 | GO:0005528: FK506 binding | 2.12E-03 |
| 28 | GO:0051536: iron-sulfur cluster binding | 2.12E-03 |
| 29 | GO:0043424: protein histidine kinase binding | 2.26E-03 |
| 30 | GO:0022891: substrate-specific transmembrane transporter activity | 2.71E-03 |
| 31 | GO:0047134: protein-disulfide reductase activity | 3.03E-03 |
| 32 | GO:0004791: thioredoxin-disulfide reductase activity | 3.53E-03 |
| 33 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.24E-03 |
| 34 | GO:0016168: chlorophyll binding | 5.18E-03 |
| 35 | GO:0008236: serine-type peptidase activity | 5.78E-03 |
| 36 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.04E-02 |
| 37 | GO:0051082: unfolded protein binding | 1.33E-02 |
| 38 | GO:0015035: protein disulfide oxidoreductase activity | 1.36E-02 |
| 39 | GO:0008565: protein transporter activity | 1.77E-02 |
| 40 | GO:0042802: identical protein binding | 2.32E-02 |
| 41 | GO:0016788: hydrolase activity, acting on ester bonds | 2.71E-02 |
| 42 | GO:0003729: mRNA binding | 2.92E-02 |
| 43 | GO:0008233: peptidase activity | 3.08E-02 |
| 44 | GO:0003924: GTPase activity | 4.11E-02 |
| 45 | GO:0016787: hydrolase activity | 4.19E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.54E-31 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.07E-20 |
| 5 | GO:0009570: chloroplast stroma | 6.90E-18 |
| 6 | GO:0009534: chloroplast thylakoid | 1.22E-17 |
| 7 | GO:0009579: thylakoid | 1.80E-09 |
| 8 | GO:0009941: chloroplast envelope | 2.12E-09 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 4.37E-06 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.78E-05 |
| 11 | GO:0080085: signal recognition particle, chloroplast targeting | 8.78E-05 |
| 12 | GO:0010007: magnesium chelatase complex | 1.52E-04 |
| 13 | GO:0033281: TAT protein transport complex | 1.52E-04 |
| 14 | GO:0009526: plastid envelope | 3.05E-04 |
| 15 | GO:0055035: plastid thylakoid membrane | 3.89E-04 |
| 16 | GO:0031977: thylakoid lumen | 5.72E-04 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 6.66E-04 |
| 18 | GO:0009501: amyloplast | 7.68E-04 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 8.71E-04 |
| 20 | GO:0032040: small-subunit processome | 1.44E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 2.26E-03 |
| 22 | GO:0042651: thylakoid membrane | 2.26E-03 |
| 23 | GO:0015935: small ribosomal subunit | 2.41E-03 |
| 24 | GO:0009523: photosystem II | 3.70E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 3.70E-03 |
| 26 | GO:0010287: plastoglobule | 1.50E-02 |
| 27 | GO:0005623: cell | 1.59E-02 |
| 28 | GO:0005840: ribosome | 2.05E-02 |
| 29 | GO:0031969: chloroplast membrane | 3.11E-02 |