co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006482: protein demethylation	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0002376: immune system process	0.00E+00
4	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
5	GO:0010360: negative regulation of anion channel activity	0.00E+00
6	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
7	GO:0048227: plasma membrane to endosome transport	0.00E+00
8	GO:0006983: ER overload response	0.00E+00
9	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
10	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
11	GO:0000188: inactivation of MAPK activity	0.00E+00
12	GO:0001676: long-chain fatty acid metabolic process	2.31E-05
13	GO:0006014: D-ribose metabolic process	9.77E-05
14	GO:0055114: oxidation-reduction process	1.50E-04
15	GO:0016559: peroxisome fission	2.25E-04
16	GO:0009819: drought recovery	2.25E-04
17	GO:0080120: CAAX-box protein maturation	2.46E-04
18	GO:0071586: CAAX-box protein processing	2.46E-04
19	GO:0048363: mucilage pectin metabolic process	2.46E-04
20	GO:0006481: C-terminal protein methylation	2.46E-04
21	GO:1902361: mitochondrial pyruvate transmembrane transport	2.46E-04
22	GO:0010265: SCF complex assembly	2.46E-04
23	GO:0030968: endoplasmic reticulum unfolded protein response	2.78E-04
24	GO:0008202: steroid metabolic process	3.99E-04
25	GO:0043069: negative regulation of programmed cell death	4.67E-04
26	GO:0015914: phospholipid transport	5.44E-04
27	GO:0050684: regulation of mRNA processing	5.44E-04
28	GO:0006672: ceramide metabolic process	5.44E-04
29	GO:0009727: detection of ethylene stimulus	5.44E-04
30	GO:0007584: response to nutrient	5.44E-04
31	GO:0043066: negative regulation of apoptotic process	5.44E-04
32	GO:0006850: mitochondrial pyruvate transport	5.44E-04
33	GO:0015865: purine nucleotide transport	5.44E-04
34	GO:0006501: C-terminal protein lipidation	5.44E-04
35	GO:0019441: tryptophan catabolic process to kynurenine	5.44E-04
36	GO:0031648: protein destabilization	5.44E-04
37	GO:0000266: mitochondrial fission	6.18E-04
38	GO:0006626: protein targeting to mitochondrion	7.00E-04
39	GO:0009410: response to xenobiotic stimulus	8.83E-04
40	GO:0010498: proteasomal protein catabolic process	8.83E-04
41	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	8.83E-04
42	GO:0032784: regulation of DNA-templated transcription, elongation	8.83E-04
43	GO:0010359: regulation of anion channel activity	8.83E-04
44	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.83E-04
45	GO:0051176: positive regulation of sulfur metabolic process	8.83E-04
46	GO:0010150: leaf senescence	9.41E-04
47	GO:0006631: fatty acid metabolic process	1.02E-03
48	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.26E-03
49	GO:0034219: carbohydrate transmembrane transport	1.26E-03
50	GO:0046902: regulation of mitochondrial membrane permeability	1.26E-03
51	GO:0080001: mucilage extrusion from seed coat	1.26E-03
52	GO:0010255: glucose mediated signaling pathway	1.26E-03
53	GO:0007005: mitochondrion organization	1.42E-03
54	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.43E-03
55	GO:0010222: stem vascular tissue pattern formation	1.68E-03
56	GO:0033320: UDP-D-xylose biosynthetic process	1.68E-03
57	GO:0010107: potassium ion import	1.68E-03
58	GO:0042991: transcription factor import into nucleus	1.68E-03
59	GO:0044804: nucleophagy	1.68E-03
60	GO:0007029: endoplasmic reticulum organization	2.15E-03
61	GO:0010225: response to UV-C	2.15E-03
62	GO:0030308: negative regulation of cell growth	2.15E-03
63	GO:0000422: mitophagy	2.15E-03
64	GO:0006090: pyruvate metabolic process	2.15E-03
65	GO:0046283: anthocyanin-containing compound metabolic process	2.15E-03
66	GO:0006468: protein phosphorylation	2.17E-03
67	GO:0046686: response to cadmium ion	2.22E-03
68	GO:0019252: starch biosynthetic process	2.44E-03
69	GO:0070814: hydrogen sulfide biosynthetic process	2.65E-03
70	GO:0042732: D-xylose metabolic process	2.65E-03
71	GO:0000045: autophagosome assembly	2.65E-03
72	GO:0045040: protein import into mitochondrial outer membrane	2.65E-03
73	GO:1902456: regulation of stomatal opening	2.65E-03
74	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.65E-03
75	GO:0009630: gravitropism	2.78E-03
76	GO:0007264: small GTPase mediated signal transduction	2.78E-03
77	GO:0046777: protein autophosphorylation	2.80E-03
78	GO:0006914: autophagy	3.16E-03
79	GO:0048280: vesicle fusion with Golgi apparatus	3.18E-03
80	GO:0098655: cation transmembrane transport	3.18E-03
81	GO:0050790: regulation of catalytic activity	3.75E-03
82	GO:1902074: response to salt	3.75E-03
83	GO:0006605: protein targeting	4.35E-03
84	GO:2000070: regulation of response to water deprivation	4.35E-03
85	GO:0009808: lignin metabolic process	4.98E-03
86	GO:0009827: plant-type cell wall modification	4.98E-03
87	GO:0009657: plastid organization	4.98E-03
88	GO:0007338: single fertilization	5.65E-03
89	GO:0009051: pentose-phosphate shunt, oxidative branch	5.65E-03
90	GO:0009821: alkaloid biosynthetic process	5.65E-03
91	GO:0010043: response to zinc ion	5.67E-03
92	GO:0010629: negative regulation of gene expression	7.06E-03
93	GO:0006896: Golgi to vacuole transport	7.06E-03
94	GO:0000103: sulfate assimilation	7.06E-03
95	GO:0030148: sphingolipid biosynthetic process	7.80E-03
96	GO:0000038: very long-chain fatty acid metabolic process	7.80E-03
97	GO:0052544: defense response by callose deposition in cell wall	7.80E-03
98	GO:0015770: sucrose transport	7.80E-03
99	GO:0051707: response to other organism	8.02E-03
100	GO:0006108: malate metabolic process	9.38E-03
101	GO:0009846: pollen germination	1.01E-02
102	GO:0009266: response to temperature stimulus	1.02E-02
103	GO:0009225: nucleotide-sugar metabolic process	1.11E-02
104	GO:0010167: response to nitrate	1.11E-02
105	GO:0005985: sucrose metabolic process	1.11E-02
106	GO:0035556: intracellular signal transduction	1.18E-02
107	GO:0000162: tryptophan biosynthetic process	1.20E-02
108	GO:0009863: salicylic acid mediated signaling pathway	1.29E-02
109	GO:2000377: regulation of reactive oxygen species metabolic process	1.29E-02
110	GO:0006874: cellular calcium ion homeostasis	1.38E-02
111	GO:0051260: protein homooligomerization	1.47E-02
112	GO:0031408: oxylipin biosynthetic process	1.47E-02
113	GO:0015992: proton transport	1.47E-02
114	GO:0009814: defense response, incompatible interaction	1.57E-02
115	GO:0016226: iron-sulfur cluster assembly	1.57E-02
116	GO:0030433: ubiquitin-dependent ERAD pathway	1.57E-02
117	GO:0031348: negative regulation of defense response	1.57E-02
118	GO:0006012: galactose metabolic process	1.67E-02
119	GO:0071369: cellular response to ethylene stimulus	1.67E-02
120	GO:0016117: carotenoid biosynthetic process	1.88E-02
121	GO:0042147: retrograde transport, endosome to Golgi	1.88E-02
122	GO:0010118: stomatal movement	1.99E-02
123	GO:0042391: regulation of membrane potential	1.99E-02
124	GO:0010087: phloem or xylem histogenesis	1.99E-02
125	GO:0008152: metabolic process	2.18E-02
126	GO:0042752: regulation of circadian rhythm	2.21E-02
127	GO:0009851: auxin biosynthetic process	2.32E-02
128	GO:0006623: protein targeting to vacuole	2.32E-02
129	GO:0048825: cotyledon development	2.32E-02
130	GO:0009749: response to glucose	2.32E-02
131	GO:0006633: fatty acid biosynthetic process	2.43E-02
132	GO:0071554: cell wall organization or biogenesis	2.43E-02
133	GO:0010193: response to ozone	2.43E-02
134	GO:0006891: intra-Golgi vesicle-mediated transport	2.43E-02
135	GO:1901657: glycosyl compound metabolic process	2.67E-02
136	GO:0009567: double fertilization forming a zygote and endosperm	2.79E-02
137	GO:0009651: response to salt stress	3.01E-02
138	GO:0051607: defense response to virus	3.04E-02
139	GO:0006979: response to oxidative stress	3.16E-02
140	GO:0009615: response to virus	3.16E-02
141	GO:0009607: response to biotic stimulus	3.29E-02
142	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.29E-02
143	GO:0009816: defense response to bacterium, incompatible interaction	3.29E-02
144	GO:0006888: ER to Golgi vesicle-mediated transport	3.55E-02
145	GO:0009738: abscisic acid-activated signaling pathway	3.78E-02
146	GO:0008219: cell death	3.82E-02
147	GO:0009407: toxin catabolic process	4.10E-02
148	GO:0010119: regulation of stomatal movement	4.24E-02
149	GO:0015031: protein transport	4.42E-02
150	GO:0006970: response to osmotic stress	4.44E-02
151	GO:0009860: pollen tube growth	4.44E-02
152	GO:0016310: phosphorylation	4.45E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	4.52E-02
154	GO:0016051: carbohydrate biosynthetic process	4.52E-02
155	GO:0007049: cell cycle	4.60E-02
156	GO:0048366: leaf development	4.85E-02
157	GO:0006839: mitochondrial transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0051723: protein methylesterase activity	0.00E+00
5	GO:0071949: FAD binding	9.75E-06
6	GO:0019776: Atg8 ligase activity	4.19E-05
7	GO:0004040: amidase activity	6.67E-05
8	GO:0005496: steroid binding	6.67E-05
9	GO:0102391: decanoate--CoA ligase activity	1.34E-04
10	GO:0004747: ribokinase activity	1.34E-04
11	GO:0004467: long-chain fatty acid-CoA ligase activity	1.77E-04
12	GO:0008865: fructokinase activity	2.25E-04
13	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.46E-04
14	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.46E-04
15	GO:0019786: Atg8-specific protease activity	2.46E-04
16	GO:0008142: oxysterol binding	2.78E-04
17	GO:0016301: kinase activity	3.59E-04
18	GO:0032934: sterol binding	5.44E-04
19	GO:0045140: inositol phosphoceramide synthase activity	5.44E-04
20	GO:0019779: Atg8 activating enzyme activity	5.44E-04
21	GO:0004061: arylformamidase activity	5.44E-04
22	GO:0015036: disulfide oxidoreductase activity	5.44E-04
23	GO:0004674: protein serine/threonine kinase activity	5.73E-04
24	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	8.83E-04
25	GO:0052692: raffinose alpha-galactosidase activity	8.83E-04
26	GO:0005093: Rab GDP-dissociation inhibitor activity	8.83E-04
27	GO:0008430: selenium binding	8.83E-04
28	GO:0004557: alpha-galactosidase activity	8.83E-04
29	GO:0050833: pyruvate transmembrane transporter activity	8.83E-04
30	GO:0004781: sulfate adenylyltransferase (ATP) activity	8.83E-04
31	GO:0016805: dipeptidase activity	8.83E-04
32	GO:0005524: ATP binding	1.04E-03
33	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.26E-03
34	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.26E-03
35	GO:0004834: tryptophan synthase activity	1.68E-03
36	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.68E-03
37	GO:0070628: proteasome binding	1.68E-03
38	GO:0004470: malic enzyme activity	1.68E-03
39	GO:0009916: alternative oxidase activity	1.68E-03
40	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.68E-03
41	GO:0004301: epoxide hydrolase activity	1.68E-03
42	GO:0008948: oxaloacetate decarboxylase activity	2.15E-03
43	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.15E-03
44	GO:0005471: ATP:ADP antiporter activity	2.15E-03
45	GO:0004497: monooxygenase activity	2.52E-03
46	GO:0048040: UDP-glucuronate decarboxylase activity	2.65E-03
47	GO:0031593: polyubiquitin binding	2.65E-03
48	GO:0036402: proteasome-activating ATPase activity	2.65E-03
49	GO:0070403: NAD+ binding	3.18E-03
50	GO:0003978: UDP-glucose 4-epimerase activity	3.18E-03
51	GO:0004602: glutathione peroxidase activity	3.18E-03
52	GO:0008506: sucrose:proton symporter activity	3.75E-03
53	GO:0008235: metalloexopeptidase activity	3.75E-03
54	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.75E-03
55	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.75E-03
56	GO:0043295: glutathione binding	3.75E-03
57	GO:0051213: dioxygenase activity	3.76E-03
58	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.35E-03
59	GO:0005267: potassium channel activity	4.98E-03
60	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.65E-03
61	GO:0030145: manganese ion binding	5.67E-03
62	GO:0016844: strictosidine synthase activity	6.33E-03
63	GO:0004743: pyruvate kinase activity	6.33E-03
64	GO:0030955: potassium ion binding	6.33E-03
65	GO:0008047: enzyme activator activity	7.06E-03
66	GO:0004713: protein tyrosine kinase activity	7.06E-03
67	GO:0004364: glutathione transferase activity	7.69E-03
68	GO:0008794: arsenate reductase (glutaredoxin) activity	7.80E-03
69	GO:0004177: aminopeptidase activity	7.80E-03
70	GO:0004521: endoribonuclease activity	8.58E-03
71	GO:0000175: 3'-5'-exoribonuclease activity	9.38E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	9.38E-03
73	GO:0004175: endopeptidase activity	1.02E-02
74	GO:0004535: poly(A)-specific ribonuclease activity	1.02E-02
75	GO:0030552: cAMP binding	1.11E-02
76	GO:0030553: cGMP binding	1.11E-02
77	GO:0017025: TBP-class protein binding	1.11E-02
78	GO:0005217: intracellular ligand-gated ion channel activity	1.11E-02
79	GO:0004970: ionotropic glutamate receptor activity	1.11E-02
80	GO:0004725: protein tyrosine phosphatase activity	1.20E-02
81	GO:0008234: cysteine-type peptidase activity	1.20E-02
82	GO:0005216: ion channel activity	1.38E-02
83	GO:0008408: 3'-5' exonuclease activity	1.47E-02
84	GO:0035251: UDP-glucosyltransferase activity	1.47E-02
85	GO:0004540: ribonuclease activity	1.47E-02
86	GO:0016491: oxidoreductase activity	1.57E-02
87	GO:0003727: single-stranded RNA binding	1.77E-02
88	GO:0005249: voltage-gated potassium channel activity	1.99E-02
89	GO:0030551: cyclic nucleotide binding	1.99E-02
90	GO:0005516: calmodulin binding	2.02E-02
91	GO:0020037: heme binding	2.14E-02
92	GO:0005515: protein binding	2.19E-02
93	GO:0010181: FMN binding	2.21E-02
94	GO:0015144: carbohydrate transmembrane transporter activity	2.32E-02
95	GO:0004872: receptor activity	2.32E-02
96	GO:0004197: cysteine-type endopeptidase activity	2.55E-02
97	GO:0005351: sugar:proton symporter activity	2.61E-02
98	GO:0016791: phosphatase activity	2.79E-02
99	GO:0008483: transaminase activity	2.91E-02
100	GO:0008194: UDP-glycosyltransferase activity	2.99E-02
101	GO:0016413: O-acetyltransferase activity	3.04E-02
102	GO:0016597: amino acid binding	3.04E-02
103	GO:0016887: ATPase activity	3.33E-02
104	GO:0042802: identical protein binding	3.40E-02
105	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.42E-02
106	GO:0004683: calmodulin-dependent protein kinase activity	3.55E-02
107	GO:0102483: scopolin beta-glucosidase activity	3.55E-02
108	GO:0004721: phosphoprotein phosphatase activity	3.55E-02
109	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
110	GO:0005096: GTPase activator activity	3.96E-02
111	GO:0004222: metalloendopeptidase activity	4.10E-02
112	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.52E-02
113	GO:0050660: flavin adenine dinucleotide binding	4.76E-02
114	GO:0008422: beta-glucosidase activity	4.81E-02
115	GO:0000149: SNARE binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0005829: cytosol	8.57E-07
3	GO:0005773: vacuole	1.90E-05
4	GO:0016021: integral component of membrane	1.27E-04
5	GO:0005783: endoplasmic reticulum	2.26E-04
6	GO:0030014: CCR4-NOT complex	2.46E-04
7	GO:0034274: Atg12-Atg5-Atg16 complex	5.44E-04
8	GO:0031314: extrinsic component of mitochondrial inner membrane	5.44E-04
9	GO:0005789: endoplasmic reticulum membrane	6.58E-04
10	GO:0005886: plasma membrane	7.11E-04
11	GO:0042406: extrinsic component of endoplasmic reticulum membrane	8.83E-04
12	GO:0031461: cullin-RING ubiquitin ligase complex	1.26E-03
13	GO:0005775: vacuolar lumen	1.26E-03
14	GO:0005741: mitochondrial outer membrane	1.30E-03
15	GO:0005776: autophagosome	1.68E-03
16	GO:0030140: trans-Golgi network transport vesicle	2.65E-03
17	GO:0031597: cytosolic proteasome complex	3.18E-03
18	GO:0005778: peroxisomal membrane	3.35E-03
19	GO:0005777: peroxisome	3.63E-03
20	GO:0000794: condensed nuclear chromosome	3.75E-03
21	GO:0031595: nuclear proteasome complex	3.75E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	4.35E-03
23	GO:0000421: autophagosome membrane	4.35E-03
24	GO:0031305: integral component of mitochondrial inner membrane	4.35E-03
25	GO:0005742: mitochondrial outer membrane translocase complex	4.98E-03
26	GO:0034045: pre-autophagosomal structure membrane	4.98E-03
27	GO:0005794: Golgi apparatus	5.24E-03
28	GO:0008540: proteasome regulatory particle, base subcomplex	6.33E-03
29	GO:0005819: spindle	6.78E-03
30	GO:0031902: late endosome membrane	7.39E-03
31	GO:0031307: integral component of mitochondrial outer membrane	8.58E-03
32	GO:0005764: lysosome	1.02E-02
33	GO:0030176: integral component of endoplasmic reticulum membrane	1.11E-02
34	GO:0005635: nuclear envelope	1.16E-02
35	GO:0070469: respiratory chain	1.38E-02
36	GO:0005839: proteasome core complex	1.47E-02
37	GO:0031410: cytoplasmic vesicle	1.57E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.77E-02
39	GO:0005623: cell	1.99E-02
40	GO:0009524: phragmoplast	2.04E-02
41	GO:0005770: late endosome	2.09E-02
42	GO:0000151: ubiquitin ligase complex	3.82E-02
43	GO:0000325: plant-type vacuole	4.24E-02